FFCP PHASE1:Hg19::chr3:48885228..48885327,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5576 | |EntrezGene=5576 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9391 | |HGNC=9391 | ||
|TSSclassifier=strong | |||
|UniProt=P13861,Q9BUB1,C9J830 | |UniProt=P13861,Q9BUB1,C9J830 | ||
|association_with_transcript=0bp_to_ENST00000265563,ENST00000296446,ENST00000419216,ENST00000454963,NM_004157,uc003cux.1,uc003cuy.1,uc010hki.1_5end | |association_with_transcript=0bp_to_ENST00000265563,ENST00000296446,ENST00000419216,ENST00000454963,NM_004157,uc003cux.1,uc003cuy.1,uc010hki.1_5end | ||
|cluster_id=chr3:48885228..48885327,- | |||
|description=CAGE_peak_1_at_PRKAR2A_5end | |description=CAGE_peak_1_at_PRKAR2A_5end | ||
|id=chr3:48885228..48885327,- | |id=chr3:48885228..48885327,- | ||
|ontology_enrichment_celltype=CL:0000220!7.92e-11!246;CL:0002321!1.01e-10!248;CL:0000055!1.19e-09!180;CL:0000222!1.39e-08!119;CL:0000115!1.16e-07!35;CL:0000071!1.24e-07!18;CL:0002546!1.24e-07!18;CL:0002078!1.53e-07!44;CL:0000183!1.95e-07!59;CL:0002139!5.28e-07!24 | |ontology_enrichment_celltype=CL:0000220!7.92e-11!246;CL:0002321!1.01e-10!248;CL:0000055!1.19e-09!180;CL:0000222!1.39e-08!119;CL:0000115!1.16e-07!35;CL:0000071!1.24e-07!18;CL:0002546!1.24e-07!18;CL:0002078!1.53e-07!44;CL:0000183!1.95e-07!59;CL:0002139!5.28e-07!24 | ||
|ontology_enrichment_celltype_v019=CL:0000071;1.35e-07;18!CL:0000115;4.47e-07;36!CL:0002139;5.26e-07;24 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,2.65e-11,250;CL:0000222,3.29e-09,121;CL:0000115,3.46e-08,36;CL:0002078,4.98e-08,45;CL:0000071,1.24e-07,18;CL:0002546,1.24e-07,18;CL:0002139,5.28e-07,24 | |||
|ontology_enrichment_development_v019=CL:0002546;1.35e-07;18 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003914!1.97e-13!118;UBERON:0002049!6.36e-12!79;UBERON:0007798!6.36e-12!79;UBERON:0000119!1.24e-11!312;UBERON:0005256!1.25e-11!143;UBERON:0000490!5.78e-11!138;UBERON:0000483!8.60e-11!309;UBERON:0003104!1.22e-10!238;UBERON:0009142!1.22e-10!238;UBERON:0001009!1.31e-10!113;UBERON:0004535!8.16e-10!110;UBERON:0001981!1.12e-09!60;UBERON:0007500!1.12e-09!60;UBERON:0004537!1.12e-09!60;UBERON:0006965!1.12e-09!60;UBERON:0000055!2.69e-09!69;UBERON:0002100!3.85e-09!216;UBERON:0000481!1.24e-08!347;UBERON:0004872!2.14e-08!84;UBERON:0004290!5.84e-08!70;UBERON:0000923!6.62e-08!604;UBERON:0005291!6.62e-08!604;UBERON:0006598!6.62e-08!604;UBERON:0002532!6.62e-08!604;UBERON:0002050!1.04e-07!605;UBERON:0005423!1.04e-07!605;UBERON:0001986!1.24e-07!18;UBERON:0004638!1.24e-07!18;UBERON:0004852!1.24e-07!18;UBERON:0000922!1.38e-07!612;UBERON:0000914!2.77e-07!83;UBERON:0002329!2.77e-07!83;UBERON:0003077!2.77e-07!83;UBERON:0003059!2.77e-07!83;UBERON:0007282!2.77e-07!83;UBERON:0009618!2.77e-07!83;UBERON:0007285!2.77e-07!83;UBERON:0000926!3.30e-07!448;UBERON:0004120!3.30e-07!448;UBERON:0006603!3.30e-07!448;UBERON:0000486!6.52e-07!82;UBERON:0000487!6.52e-07!22;UBERON:0000475!9.16e-07!365 | |ontology_enrichment_uberon=UBERON:0003914!1.97e-13!118;UBERON:0002049!6.36e-12!79;UBERON:0007798!6.36e-12!79;UBERON:0000119!1.24e-11!312;UBERON:0005256!1.25e-11!143;UBERON:0000490!5.78e-11!138;UBERON:0000483!8.60e-11!309;UBERON:0003104!1.22e-10!238;UBERON:0009142!1.22e-10!238;UBERON:0001009!1.31e-10!113;UBERON:0004535!8.16e-10!110;UBERON:0001981!1.12e-09!60;UBERON:0007500!1.12e-09!60;UBERON:0004537!1.12e-09!60;UBERON:0006965!1.12e-09!60;UBERON:0000055!2.69e-09!69;UBERON:0002100!3.85e-09!216;UBERON:0000481!1.24e-08!347;UBERON:0004872!2.14e-08!84;UBERON:0004290!5.84e-08!70;UBERON:0000923!6.62e-08!604;UBERON:0005291!6.62e-08!604;UBERON:0006598!6.62e-08!604;UBERON:0002532!6.62e-08!604;UBERON:0002050!1.04e-07!605;UBERON:0005423!1.04e-07!605;UBERON:0001986!1.24e-07!18;UBERON:0004638!1.24e-07!18;UBERON:0004852!1.24e-07!18;UBERON:0000922!1.38e-07!612;UBERON:0000914!2.77e-07!83;UBERON:0002329!2.77e-07!83;UBERON:0003077!2.77e-07!83;UBERON:0003059!2.77e-07!83;UBERON:0007282!2.77e-07!83;UBERON:0009618!2.77e-07!83;UBERON:0007285!2.77e-07!83;UBERON:0000926!3.30e-07!448;UBERON:0004120!3.30e-07!448;UBERON:0006603!3.30e-07!448;UBERON:0000486!6.52e-07!82;UBERON:0000487!6.52e-07!22;UBERON:0000475!9.16e-07!365 | ||
|ontology_enrichment_uberon_v019=UBERON:0004638;1.35e-07;18!UBERON:0001986;1.35e-07;18!UBERON:0004852;1.35e-07;18!UBERON:0000487;6.59e-07;22 | |||
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| ||
|short_description=p1@PRKAR2A | |short_description=p1@PRKAR2A | ||
}} | }} |
Latest revision as of 15:12, 18 September 2015
Short description: | p1@PRKAR2A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PRKAR2A_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000265563, ENST00000296446, ENST00000419216, ENST00000454963, NM_004157, uc003cux.1, uc003cuy.1, uc010hki.1_5end |
EntrezGene: | PRKAR2A |
HGNC: | 9391 |
UniProt: | P13861Q9BUB1C9J830 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 2.65e-11 | 250 |
mesodermal cell | 3.29e-09 | 121 |
endothelial cell | 3.46e-08 | 36 |
meso-epithelial cell | 4.98e-08 | 45 |
blood vessel endothelial cell | 1.24e-07 | 18 |
embryonic blood vessel endothelial progenitor cell | 1.24e-07 | 18 |
endothelial cell of vascular tree | 5.28e-07 | 24 |
Ontology term | p-value | n |
---|---|---|
mesenchyme | 1.16e-14 | 160 |
entire embryonic mesenchyme | 1.16e-14 | 160 |
unilaminar epithelium | 3.61e-13 | 148 |
epithelial tube | 3.91e-13 | 117 |
vasculature | 2.76e-12 | 78 |
vascular system | 2.76e-12 | 78 |
cell layer | 4.49e-11 | 309 |
trunk mesenchyme | 5.58e-11 | 122 |
circulatory system | 7.13e-11 | 112 |
epithelium | 2.97e-10 | 306 |
cardiovascular system | 4.56e-10 | 109 |
trunk | 4.60e-10 | 199 |
epithelial tube open at both ends | 4.74e-10 | 59 |
blood vessel | 4.74e-10 | 59 |
blood vasculature | 4.74e-10 | 59 |
vascular cord | 4.74e-10 | 59 |
vessel | 1.26e-09 | 68 |
epithelial vesicle | 1.56e-09 | 78 |
splanchnic layer of lateral plate mesoderm | 1.15e-08 | 83 |
somite | 3.09e-08 | 71 |
presomitic mesoderm | 3.09e-08 | 71 |
presumptive segmental plate | 3.09e-08 | 71 |
dermomyotome | 3.09e-08 | 71 |
trunk paraxial mesoderm | 3.09e-08 | 71 |
paraxial mesoderm | 4.31e-08 | 72 |
presumptive paraxial mesoderm | 4.31e-08 | 72 |
dense mesenchyme tissue | 9.70e-08 | 73 |
blood vessel endothelium | 1.24e-07 | 18 |
endothelium | 1.24e-07 | 18 |
cardiovascular system endothelium | 1.24e-07 | 18 |
multilaminar epithelium | 3.67e-07 | 83 |
simple squamous epithelium | 6.52e-07 | 22 |
embryo | 9.94e-07 | 592 |