FFCP PHASE1:Hg19::chr17:9804491..9804501,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5957 | |EntrezGene=5957 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9937 | |HGNC=9937 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=17bp_to_uc002gmf.1_5end | |association_with_transcript=17bp_to_uc002gmf.1_5end | ||
|cluster_id=chr17:9804491..9804501,- | |||
|coexpression_cluster_id=C40 | |coexpression_cluster_id=C40 | ||
|description=CAGE_peak_5_at_RCVRN_5end | |description=CAGE_peak_5_at_RCVRN_5end | ||
|id=chr17:9804491..9804501,- | |id=chr17:9804491..9804501,- | ||
|ontology_enrichment_celltype=CL:0002195!2.27e-10!2;CL:0002571!2.27e-10!2 | |ontology_enrichment_celltype=CL:0002195!2.27e-10!2;CL:0002571!2.27e-10!2 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0003056;3.27e-23;3 | |||
|ontology_enrichment_disease=DOID:3093!7.15e-07!11 | |ontology_enrichment_disease=DOID:3093!7.15e-07!11 | ||
|ontology_enrichment_disease_v019=DOID:5409;1.03e-17;4!DOID:1325;9.89e-11;7!DOID:3904;9.89e-11;7!DOID:3905;1.21e-08;9 | |||
|ontology_enrichment_disease_v019_2=DOID:5409,1.03e-17,4;DOID:1325,9.89e-11,7;DOID:3904,9.89e-11,7;DOID:3905,1.21e-08,9 | |||
|ontology_enrichment_uberon=UBERON:0001154!2.71e-19!1;UBERON:0001153!2.71e-19!1;UBERON:0000966!1.88e-15!5;UBERON:0005388!1.88e-15!5;UBERON:0001802!1.88e-15!5;UBERON:0000970!6.66e-15!20;UBERON:0002104!3.27e-14!21;UBERON:0000020!5.23e-13!23;UBERON:0001032!1.76e-12!24;UBERON:0004456!1.76e-12!24;UBERON:0001905!1.89e-10!2;UBERON:0002757!1.89e-10!2;UBERON:0010134!1.89e-10!2;UBERON:0002784!1.89e-10!2;UBERON:0005408!1.89e-10!2;UBERON:0001899!1.89e-10!2;UBERON:0000019!3.24e-09!19;UBERON:0000047!3.24e-09!19;UBERON:0004088!3.24e-09!19;UBERON:0003072!3.24e-09!19;UBERON:0003071!3.24e-09!19;UBERON:0004128!3.24e-09!19;UBERON:0001456!2.16e-08!21;UBERON:0003056!2.29e-07!61 | |ontology_enrichment_uberon=UBERON:0001154!2.71e-19!1;UBERON:0001153!2.71e-19!1;UBERON:0000966!1.88e-15!5;UBERON:0005388!1.88e-15!5;UBERON:0001802!1.88e-15!5;UBERON:0000970!6.66e-15!20;UBERON:0002104!3.27e-14!21;UBERON:0000020!5.23e-13!23;UBERON:0001032!1.76e-12!24;UBERON:0004456!1.76e-12!24;UBERON:0001905!1.89e-10!2;UBERON:0002757!1.89e-10!2;UBERON:0010134!1.89e-10!2;UBERON:0002784!1.89e-10!2;UBERON:0005408!1.89e-10!2;UBERON:0001899!1.89e-10!2;UBERON:0000019!3.24e-09!19;UBERON:0000047!3.24e-09!19;UBERON:0004088!3.24e-09!19;UBERON:0003072!3.24e-09!19;UBERON:0003071!3.24e-09!19;UBERON:0004128!3.24e-09!19;UBERON:0001456!2.16e-08!21;UBERON:0003056!2.29e-07!61 | ||
|ontology_enrichment_uberon_v019=UBERON:0000966;1.60e-14;5!UBERON:0005388;1.60e-14;5!UBERON:0001802;1.60e-14;5!UBERON:0000970;2.41e-14;20!UBERON:0002104;1.02e-13;21!UBERON:0000020;1.25e-12;23!UBERON:0001032;3.75e-12;24!UBERON:0004456;3.75e-12;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000970,1.02e-13,21;UBERON:0002104,1.02e-13,21;UBERON:0000966,2.45e-12,6;UBERON:0005388,2.45e-12,6;UBERON:0001802,2.45e-12,6;UBERON:0000020,3.75e-12,24;UBERON:0001032,3.75e-12,24;UBERON:0004456,3.75e-12,24 | |||
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|short_description=p5@RCVRN | |short_description=p5@RCVRN | ||
}} | }} |
Latest revision as of 17:17, 18 September 2015
Short description: | p5@RCVRN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_RCVRN_5end |
Coexpression cluster: | C40_eye_retina_Lens_pineal_tongue_retinoblastoma_small |
Association with transcript: | 17bp_to_uc002gmf.1_5end |
EntrezGene: | RCVRN |
HGNC: | 9937 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
eye | 1.02e-13 | 21 |
visual system | 1.02e-13 | 21 |
retina | 2.45e-12 | 6 |
photoreceptor array | 2.45e-12 | 6 |
posterior segment of eyeball | 2.45e-12 | 6 |
sense organ | 3.75e-12 | 24 |
sensory system | 3.75e-12 | 24 |
entire sense organ system | 3.75e-12 | 24 |
Ontology term | p-value | n |
---|---|---|
lung small cell carcinoma | 1.03e-17 | 4 |
bronchus cancer | 9.89e-11 | 7 |
bronchogenic carcinoma | 9.89e-11 | 7 |
lung carcinoma | 1.21e-08 | 9 |