FFCP PHASE1:Hg19::chr17:9808183..9808184,-: Difference between revisions
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|id=chr17:9808183..9808184,-
|short_description=p4@RCVRN
|description=CAGE_peak_4_at_RCVRN_5end
|association_with_transcript=5bp_to_DQ980606_5end
|EntrezGene=5957
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5957 | |EntrezGene=5957 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=9937 | |HGNC=9937 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=5bp_to_DQ980606_5end | |||
|cluster_id=chr17:9808183..9808184,- | |||
|coexpression_cluster_id=C40 | |||
|description=CAGE_peak_4_at_RCVRN_5end | |||
|id=chr17:9808183..9808184,- | |||
|ontology_enrichment_celltype=CL:0000708!2.79e-07!3 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0003056;8.00e-18;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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|short_description=p4@RCVRN | |||
}} | }} |
Latest revision as of 17:18, 18 September 2015
Short description: | p4@RCVRN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_RCVRN_5end |
Coexpression cluster: | C40_eye_retina_Lens_pineal_tongue_retinoblastoma_small |
Association with transcript: | 5bp_to_DQ980606_5end |
EntrezGene: | RCVRN |
HGNC: | 9937 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pineal body | 4.22e-98 | 2 |
regional part of epithalamus | 4.22e-98 | 2 |
secretory circumventricular organ | 4.22e-98 | 2 |
circumventricular organ | 4.22e-98 | 2 |
epithalamus | 4.22e-98 | 2 |
gland of diencephalon | 8.47e-50 | 4 |
neuroendocrine gland | 8.47e-50 | 4 |
regional part of diencephalon | 8.47e-50 | 4 |
diencephalon | 4.86e-29 | 7 |
future diencephalon | 4.86e-29 | 7 |
eye | 1.53e-10 | 21 |
visual system | 1.53e-10 | 21 |
retina | 1.32e-09 | 6 |
photoreceptor array | 1.32e-09 | 6 |
posterior segment of eyeball | 1.32e-09 | 6 |
sense organ | 2.35e-09 | 24 |
sensory system | 2.35e-09 | 24 |
entire sense organ system | 2.35e-09 | 24 |
pre-chordal neural plate | 4.61e-08 | 61 |