FFCP PHASE1:Hg19::chr6:40554813..40554832,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=57497 | |EntrezGene=57497 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=21226 | |HGNC=21226 | ||
|TSSclassifier=strong | |||
|UniProt=Q9ULH4 | |UniProt=Q9ULH4 | ||
|association_with_transcript=293bp_to_NM_020737,uc003oph.1_5end | |association_with_transcript=293bp_to_NM_020737,uc003oph.1_5end | ||
|cluster_id=chr6:40554813..40554832,- | |||
|coexpression_cluster_id=C24 | |coexpression_cluster_id=C24 | ||
|description=CAGE_peak_8_at_LRFN2_5end | |description=CAGE_peak_8_at_LRFN2_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |ontology_enrichment_celltype_v019= | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0003056;3.19e-38;3 | |ontology_enrichment_development_v019=UBERON:0003056;3.19e-38;3 | ||
|ontology_enrichment_disease=DOID:171!5.16e-09!10 | |ontology_enrichment_disease=DOID:171!5.16e-09!10 | ||
|ontology_enrichment_disease_v019=DOID:5409;2.35e-08;4 | |ontology_enrichment_disease_v019=DOID:5409;2.35e-08;4 | ||
|ontology_enrichment_disease_v019_2=DOID:5409,2.61e-08,4 | |||
|ontology_enrichment_uberon=UBERON:0000073!3.23e-46!94;UBERON:0001016!3.23e-46!94;UBERON:0002619!2.53e-45!22;UBERON:0001950!2.06e-44!20;UBERON:0002346!5.63e-44!90;UBERON:0005743!3.27e-43!86;UBERON:0001017!1.39e-42!82;UBERON:0001049!2.79e-42!57;UBERON:0005068!2.79e-42!57;UBERON:0006241!2.79e-42!57;UBERON:0007135!2.79e-42!57;UBERON:0000955!4.19e-42!69;UBERON:0006238!4.19e-42!69;UBERON:0003075!9.52e-41!86;UBERON:0007284!9.52e-41!86;UBERON:0002616!1.22e-40!59;UBERON:0002780!7.24e-40!41;UBERON:0001890!7.24e-40!41;UBERON:0006240!7.24e-40!41;UBERON:0001893!1.19e-39!34;UBERON:0000956!1.35e-39!25;UBERON:0000203!1.35e-39!25;UBERON:0003080!8.30e-39!42;UBERON:0001869!2.85e-38!32;UBERON:0002791!1.18e-36!33;UBERON:0003056!2.63e-36!61;UBERON:0002020!1.57e-35!34;UBERON:0003528!1.57e-35!34;UBERON:0000924!4.82e-31!173;UBERON:0006601!4.82e-31!173;UBERON:0000153!9.12e-30!129;UBERON:0007811!9.12e-30!129;UBERON:0000033!1.09e-29!123;UBERON:0004121!1.75e-28!169;UBERON:0007023!1.78e-26!115;UBERON:0002021!1.05e-19!5;UBERON:0000200!1.91e-16!6;UBERON:0001872!9.64e-13!5;UBERON:0000064!3.78e-11!219;UBERON:0000025!9.59e-10!194;UBERON:0001905!1.30e-09!2;UBERON:0002757!1.30e-09!2;UBERON:0010134!1.30e-09!2;UBERON:0002784!1.30e-09!2;UBERON:0005408!1.30e-09!2;UBERON:0001899!1.30e-09!2;UBERON:0001870!2.81e-09!2;UBERON:0002360!1.25e-08!2;UBERON:0000094!1.25e-08!2;UBERON:0007645!1.25e-08!2;UBERON:0000483!1.53e-08!309;UBERON:0000119!2.22e-08!312;UBERON:0001871!5.38e-08!7;UBERON:0000475!9.03e-08!365;UBERON:0004733!1.34e-07!12;UBERON:0002028!1.34e-07!12;UBERON:0007277!1.34e-07!12;UBERON:0000477!1.64e-07!286;UBERON:0004111!2.99e-07!241;UBERON:0000013!4.47e-07!5;UBERON:0002410!4.47e-07!5;UBERON:0004732!5.44e-07!13;UBERON:0002680!6.73e-07!9;UBERON:0001895!6.73e-07!9;UBERON:0010092!6.73e-07!9 | |ontology_enrichment_uberon=UBERON:0000073!3.23e-46!94;UBERON:0001016!3.23e-46!94;UBERON:0002619!2.53e-45!22;UBERON:0001950!2.06e-44!20;UBERON:0002346!5.63e-44!90;UBERON:0005743!3.27e-43!86;UBERON:0001017!1.39e-42!82;UBERON:0001049!2.79e-42!57;UBERON:0005068!2.79e-42!57;UBERON:0006241!2.79e-42!57;UBERON:0007135!2.79e-42!57;UBERON:0000955!4.19e-42!69;UBERON:0006238!4.19e-42!69;UBERON:0003075!9.52e-41!86;UBERON:0007284!9.52e-41!86;UBERON:0002616!1.22e-40!59;UBERON:0002780!7.24e-40!41;UBERON:0001890!7.24e-40!41;UBERON:0006240!7.24e-40!41;UBERON:0001893!1.19e-39!34;UBERON:0000956!1.35e-39!25;UBERON:0000203!1.35e-39!25;UBERON:0003080!8.30e-39!42;UBERON:0001869!2.85e-38!32;UBERON:0002791!1.18e-36!33;UBERON:0003056!2.63e-36!61;UBERON:0002020!1.57e-35!34;UBERON:0003528!1.57e-35!34;UBERON:0000924!4.82e-31!173;UBERON:0006601!4.82e-31!173;UBERON:0000153!9.12e-30!129;UBERON:0007811!9.12e-30!129;UBERON:0000033!1.09e-29!123;UBERON:0004121!1.75e-28!169;UBERON:0007023!1.78e-26!115;UBERON:0002021!1.05e-19!5;UBERON:0000200!1.91e-16!6;UBERON:0001872!9.64e-13!5;UBERON:0000064!3.78e-11!219;UBERON:0000025!9.59e-10!194;UBERON:0001905!1.30e-09!2;UBERON:0002757!1.30e-09!2;UBERON:0010134!1.30e-09!2;UBERON:0002784!1.30e-09!2;UBERON:0005408!1.30e-09!2;UBERON:0001899!1.30e-09!2;UBERON:0001870!2.81e-09!2;UBERON:0002360!1.25e-08!2;UBERON:0000094!1.25e-08!2;UBERON:0007645!1.25e-08!2;UBERON:0000483!1.53e-08!309;UBERON:0000119!2.22e-08!312;UBERON:0001871!5.38e-08!7;UBERON:0000475!9.03e-08!365;UBERON:0004733!1.34e-07!12;UBERON:0002028!1.34e-07!12;UBERON:0007277!1.34e-07!12;UBERON:0000477!1.64e-07!286;UBERON:0004111!2.99e-07!241;UBERON:0000013!4.47e-07!5;UBERON:0002410!4.47e-07!5;UBERON:0004732!5.44e-07!13;UBERON:0002680!6.73e-07!9;UBERON:0001895!6.73e-07!9;UBERON:0010092!6.73e-07!9 | ||
|ontology_enrichment_uberon_v019=UBERON:0001905;1.13e-57;2!UBERON:0002757;1.13e-57;2!UBERON:0010134;1.13e-57;2!UBERON:0005408;1.13e-57;2!UBERON:0001899;1.13e-57;2!UBERON:0003296;1.78e-29;4!UBERON:0010133;1.78e-29;4!UBERON:0002784;1.78e-29;4!UBERON:0000966;2.02e-23;5!UBERON:0005388;2.02e-23;5!UBERON:0001802;2.02e-23;5!UBERON:0001894;2.46e-17;7!UBERON:0000970;2.01e-13;20!UBERON:0002104;8.05e-13;21!UBERON:0000020;9.05e-12;23!UBERON:0001032;2.61e-11;24!UBERON:0004456;2.61e-11;24!UBERON:0002021;6.21e-07;5!UBERON:0000019;6.77e-07;19!UBERON:0000047;6.77e-07;19!UBERON:0004088;6.77e-07;19!UBERON:0010230;6.77e-07;19 | |ontology_enrichment_uberon_v019=UBERON:0001905;1.13e-57;2!UBERON:0002757;1.13e-57;2!UBERON:0010134;1.13e-57;2!UBERON:0005408;1.13e-57;2!UBERON:0001899;1.13e-57;2!UBERON:0003296;1.78e-29;4!UBERON:0010133;1.78e-29;4!UBERON:0002784;1.78e-29;4!UBERON:0000966;2.02e-23;5!UBERON:0005388;2.02e-23;5!UBERON:0001802;2.02e-23;5!UBERON:0001894;2.46e-17;7!UBERON:0000970;2.01e-13;20!UBERON:0002104;8.05e-13;21!UBERON:0000020;9.05e-12;23!UBERON:0001032;2.61e-11;24!UBERON:0004456;2.61e-11;24!UBERON:0002021;6.21e-07;5!UBERON:0000019;6.77e-07;19!UBERON:0000047;6.77e-07;19!UBERON:0004088;6.77e-07;19!UBERON:0010230;6.77e-07;19 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001905,1.13e-57,2;UBERON:0002757,1.13e-57,2;UBERON:0010134,1.13e-57,2;UBERON:0005408,1.13e-57,2;UBERON:0001899,1.13e-57,2;UBERON:0003296,1.78e-29,4;UBERON:0010133,1.78e-29,4;UBERON:0002784,1.78e-29,4;UBERON:0000966,8.63e-20,6;UBERON:0005388,8.63e-20,6;UBERON:0001802,8.63e-20,6;UBERON:0001894,2.46e-17,7;UBERON:0006222,2.46e-17,7;UBERON:0000970,7.43e-13,21;UBERON:0002104,7.43e-13,21;UBERON:0003056,8.92e-12,61;UBERON:0000020,2.43e-11,24;UBERON:0001032,2.43e-11,24;UBERON:0004456,2.43e-11,24;UBERON:0003075,7.14e-09,82;UBERON:0007284,7.14e-09,82;UBERON:0002346,1.78e-08,86;UBERON:0010371,4.60e-07,104;UBERON:0000955,5.84e-07,68;UBERON:0006238,5.84e-07,68;UBERON:0002021,6.39e-07,5;UBERON:0002780,8.70e-07,41;UBERON:0001890,8.70e-07,41;UBERON:0003080,8.70e-07,41;UBERON:0006240,8.70e-07,41 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201606743224732,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.385029108839245,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.371072392647405,0,0,0,0,0,0,0,0,0,0,0,0,0,0.331737779793674,0.591095237907095,0.658156191461918,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0,0,0,0,0,0,0.91821828489147,0.126373159256976,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.71176888936639,0,0,0.696418755514666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136203406111576,0,0,0.415440338029185,0,0,0.668245123238271,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.886068179966986,0.366078794705889,0,0,0.110929051536852,0,0.276697269872462,0,0,0,0,0.468334905806882,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414775308455192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215649622793364,0.157265941855896,0.109209638192014,0,0.212574920101683,0,0,0,0,0,0,0,0.256916900385838,1.41696576325585,0.478901577171454,0.205116364240755,0.504143392443436,0.484100767249525,0.484426936895553,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.675375846183947,0,0.206686796501184,0.634158101939068,0.546974809018219,0,0,0.351742488719241,0,6.96412386641773,18.4956047220353,0,0,0,0,0,0.271878931907327,0.394636641377094,0,0,0,0,0,0,0,0,1.42953088353313,1.42212250559454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.20934568419972,0.301925687133347,0,0,0.940634592723046,0,0,0,0,0,0,0.0939839179798536,0,0,0,0,0,0,0,0,0,0.271965960763659,0.872701380680755,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0645889098360061,0,0,0,0,0,0,0.0673520530145875,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201606743224732,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.385029108839245,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.371072392647405,0,0,0,0,0,0,0,0,0,0,0,0,0,0.331737779793674,0.591095237907095,0.658156191461918,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0,0,0,0,0,0,0.91821828489147,0.126373159256976,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.71176888936639,0,0,0.696418755514666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136203406111576,0,0,0.415440338029185,0,0,0.668245123238271,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.886068179966986,0.366078794705889,0,0,0.110929051536852,0,0.276697269872462,0,0,0,0,0.468334905806882,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414775308455192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215649622793364,0.157265941855896,0.109209638192014,0,0.212574920101683,0,0,0,0,0,0,0,0.256916900385838,1.41696576325585,0.478901577171454,0.205116364240755,0.504143392443436,0.484100767249525,0.484426936895553,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.675375846183947,0,0.206686796501184,0.634158101939068,0.546974809018219,0,0,0.351742488719241,0,6.96412386641773,18.4956047220353,0,0,0,0,0,0.271878931907327,0.394636641377094,0,0,0,0,0,0,0,0,1.42953088353313,1.42212250559454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.20934568419972,0.301925687133347,0,0,0.940634592723046,0,0,0,0,0,0,0.0939839179798536,0,0,0,0,0,0,0,0,0,0.271965960763659,0.872701380680755,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0645889098360061,0,0,0,0,0,0,0.0673520530145875,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p8@LRFN2 | |short_description=p8@LRFN2 | ||
}} | }} |
Latest revision as of 17:39, 18 September 2015
Short description: | p8@LRFN2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_LRFN2_5end |
Coexpression cluster: | C24_pineal_eye_retina_retinoblastoma_medulloblastoma_small_cerebral |
Association with transcript: | 293bp_to_NM_020737, uc003oph.1_5end |
EntrezGene: | LRFN2 |
HGNC: | 21226 |
UniProt: | Q9ULH4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pineal body | 1.13e-57 | 2 |
regional part of epithalamus | 1.13e-57 | 2 |
secretory circumventricular organ | 1.13e-57 | 2 |
circumventricular organ | 1.13e-57 | 2 |
epithalamus | 1.13e-57 | 2 |
gland of diencephalon | 1.78e-29 | 4 |
neuroendocrine gland | 1.78e-29 | 4 |
regional part of diencephalon | 1.78e-29 | 4 |
retina | 8.63e-20 | 6 |
photoreceptor array | 8.63e-20 | 6 |
posterior segment of eyeball | 8.63e-20 | 6 |
diencephalon | 2.46e-17 | 7 |
future diencephalon | 2.46e-17 | 7 |
eye | 7.43e-13 | 21 |
visual system | 7.43e-13 | 21 |
pre-chordal neural plate | 8.92e-12 | 61 |
sense organ | 2.43e-11 | 24 |
sensory system | 2.43e-11 | 24 |
entire sense organ system | 2.43e-11 | 24 |
neural plate | 7.14e-09 | 82 |
presumptive neural plate | 7.14e-09 | 82 |
neurectoderm | 1.78e-08 | 86 |
ecto-epithelium | 4.60e-07 | 104 |
brain | 5.84e-07 | 68 |
future brain | 5.84e-07 | 68 |
occipital lobe | 6.39e-07 | 5 |
regional part of forebrain | 8.70e-07 | 41 |
forebrain | 8.70e-07 | 41 |
anterior neural tube | 8.70e-07 | 41 |
future forebrain | 8.70e-07 | 41 |
Ontology term | p-value | n |
---|---|---|
lung small cell carcinoma | 2.61e-08 | 4 |