FFCP PHASE1:Hg19::chr6:41909533..41909560,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=896 | |EntrezGene=896 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1585 | |HGNC=1585 | ||
|TSSclassifier=strong | |||
|UniProt=B3KQ22,E9PAS4,P30281 | |UniProt=B3KQ22,E9PAS4,P30281 | ||
|association_with_transcript=0bp_to_NM_001136125,NM_001760,uc003orn.2,uc003oro.2,uc011dul.1_5end | |association_with_transcript=0bp_to_NM_001136125,NM_001760,uc003orn.2,uc003oro.2,uc011dul.1_5end | ||
|cluster_id=chr6:41909533..41909560,- | |||
|coexpression_cluster_id=C4603 | |coexpression_cluster_id=C4603 | ||
|description=CAGE_peak_3_at_CCND3_5end | |description=CAGE_peak_3_at_CCND3_5end | ||
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|ontology_enrichment_celltype=CL:0000192!1.69e-08!42;CL:0000514!1.69e-08!42;CL:0000222!3.49e-08!119;CL:0000183!9.02e-08!59;CL:0000144!3.08e-07!625;CL:0002371!4.19e-07!591;CL:0000548!5.63e-07!679;CL:0000004!5.63e-07!679;CL:0000255!5.63e-07!679;CL:0000680!6.41e-07!57;CL:0000056!6.41e-07!57;CL:0000355!6.41e-07!57;CL:0000187!9.21e-07!54 | |ontology_enrichment_celltype=CL:0000192!1.69e-08!42;CL:0000514!1.69e-08!42;CL:0000222!3.49e-08!119;CL:0000183!9.02e-08!59;CL:0000144!3.08e-07!625;CL:0002371!4.19e-07!591;CL:0000548!5.63e-07!679;CL:0000004!5.63e-07!679;CL:0000255!5.63e-07!679;CL:0000680!6.41e-07!57;CL:0000056!6.41e-07!57;CL:0000355!6.41e-07!57;CL:0000187!9.21e-07!54 | ||
|ontology_enrichment_celltype_v019= | |ontology_enrichment_celltype_v019= | ||
|ontology_enrichment_celltype_v019_2=CL:0000222,4.91e-08,121;CL:0000192,6.63e-08,43;CL:0000514,6.63e-08,43 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:1240!4.20e-14!39;DOID:2531!1.08e-13!51;DOID:0060083!1.08e-13!51;DOID:8692!1.46e-11!31 | |ontology_enrichment_disease=DOID:1240!4.20e-14!39;DOID:2531!1.08e-13!51;DOID:0060083!1.08e-13!51;DOID:8692!1.46e-11!31 | ||
|ontology_enrichment_disease_v019=DOID:1240;1.63e-11;39!DOID:8692;2.78e-11;31!DOID:2531;1.17e-08;51!DOID:0060083;1.17e-08;51 | |ontology_enrichment_disease_v019=DOID:1240;1.63e-11;39!DOID:8692;2.78e-11;31!DOID:2531;1.17e-08;51!DOID:0060083;1.17e-08;51 | ||
|ontology_enrichment_disease_v019_2=DOID:1240,4.20e-14,39;DOID:2531,1.08e-13,51;DOID:0060083,1.08e-13,51;DOID:8692,1.46e-11,31 | |||
|ontology_enrichment_uberon=UBERON:0003081!9.83e-08!216;UBERON:0004872!1.51e-07!84;UBERON:0000486!4.23e-07!82;UBERON:0001981!4.88e-07!60;UBERON:0007500!4.88e-07!60;UBERON:0004537!4.88e-07!60;UBERON:0006965!4.88e-07!60 | |ontology_enrichment_uberon=UBERON:0003081!9.83e-08!216;UBERON:0004872!1.51e-07!84;UBERON:0000486!4.23e-07!82;UBERON:0001981!4.88e-07!60;UBERON:0007500!4.88e-07!60;UBERON:0004537!4.88e-07!60;UBERON:0006965!4.88e-07!60 | ||
|ontology_enrichment_uberon_v019= | |ontology_enrichment_uberon_v019= | ||
|ontology_enrichment_uberon_v019_2=UBERON:0007503,5.83e-08,78;UBERON:0004872,9.90e-08,83;UBERON:0007500,3.03e-07,59;UBERON:0001981,3.03e-07,59;UBERON:0004537,3.03e-07,59;UBERON:0006965,3.03e-07,59;UBERON:0003081,3.15e-07,203;UBERON:0000486,9.09e-07,83 | |||
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| ||
|short_description=p3@CCND3 | |short_description=p3@CCND3 | ||
}} | }} |
Latest revision as of 19:23, 18 September 2015
Short description: | p3@CCND3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_CCND3_5end |
Coexpression cluster: | C4603_non_acute_Hodgkin_chronic_Placental_thymus_rhabdomyosarcoma |
Association with transcript: | 0bp_to_NM_001136125, NM_001760, uc003orn.2, uc003oro.2, uc011dul.1_5end |
EntrezGene: | CCND3 |
HGNC: | 1585 |
UniProt: | B3KQ22E9PAS4P30281 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 4.91e-08 | 121 |
smooth muscle cell | 6.63e-08 | 43 |
smooth muscle myoblast | 6.63e-08 | 43 |
Ontology term | p-value | n |
---|---|---|
epithelial vesicle | 5.83e-08 | 78 |
splanchnic layer of lateral plate mesoderm | 9.90e-08 | 83 |
epithelial tube open at both ends | 3.03e-07 | 59 |
blood vessel | 3.03e-07 | 59 |
blood vasculature | 3.03e-07 | 59 |
vascular cord | 3.03e-07 | 59 |
lateral plate mesoderm | 3.15e-07 | 203 |
multilaminar epithelium | 9.09e-07 | 83 |
Ontology term | p-value | n |
---|---|---|
leukemia | 4.20e-14 | 39 |
hematologic cancer | 1.08e-13 | 51 |
immune system cancer | 1.08e-13 | 51 |
myeloid leukemia | 1.46e-11 | 31 |