FFCP PHASE1:Hg19::chr6:42016385..42016498,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr6:42016385..42016498,-
|short_description=p2@CCND3
|description=CAGE_peak_2_at_CCND3_5end
|association_with_transcript=0bp_to_ENST00000502771,ENST00000505672...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=896 | |EntrezGene=896 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1585 | |HGNC=1585 | ||
|TSSclassifier=strong | |||
|UniProt=D6RDL3,D6RI00,D6RDF8 | |UniProt=D6RDL3,D6RI00,D6RDF8 | ||
|association_with_transcript=0bp_to_ENST00000502771,ENST00000505672,ENST00000505884,ENST00000508143,ENST00000510503,ENST00000511161,ENST00000511686,ENST00000512381,ENST00000513956,ENST00000514382,ENST00000514588_5end | |||
|cluster_id=chr6:42016385..42016498,- | |||
|coexpression_cluster_id=C18 | |||
|description=CAGE_peak_2_at_CCND3_5end | |||
|id=chr6:42016385..42016498,- | |||
|ontology_enrichment_celltype=CL:0000791!1.47e-12!18;CL:0000789!1.47e-12!18;CL:0002420!1.47e-12!18;CL:0002419!1.47e-12!18;CL:0000790!1.47e-12!18;CL:0000838!3.32e-12!52;CL:0000542!8.92e-12!53;CL:0000051!8.92e-12!53;CL:0000084!6.34e-10!25;CL:0000827!6.34e-10!25;CL:0000625!1.63e-08!11;CL:0000738!6.12e-07!140 | |||
|ontology_enrichment_celltype_v019=CL:0000791;1.29e-12;18!CL:0000789;1.29e-12;18!CL:0002419;1.29e-12;18!CL:0000084;5.33e-10;25!CL:0000625;1.50e-08;11!CL:0000542;3.70e-08;53!CL:0000236;4.56e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,1.35e-12,18;CL:0000789,1.35e-12,18;CL:0002420,1.35e-12,18;CL:0002419,1.35e-12,18;CL:0000790,1.35e-12,18;CL:0000838,2.48e-12,52;CL:0000542,6.73e-12,53;CL:0000051,6.73e-12,53;CL:0000084,5.94e-10,25;CL:0000827,5.94e-10,25;CL:0000625,1.55e-08,11;CL:0000738,1.62e-08,136;CL:0000037,1.87e-07,168;CL:0000988,3.83e-07,177 | |||
|ontology_enrichment_development_v019=CL:0000790;1.29e-12;18!CL:0000051;3.70e-08;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!4.28e-22!115 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,5.82e-22,114 | |||
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| ||
|short_description=p2@CCND3 | |||
}} | }} |
Latest revision as of 19:33, 18 September 2015
Short description: | p2@CCND3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_CCND3_5end |
Coexpression cluster: | C18_CD4_CD8_thymus_Whole_Peripheral_Natural_blood |
Association with transcript: | 0bp_to_ENST00000502771, ENST00000505672, ENST00000505884, ENST00000508143, ENST00000510503, ENST00000511161, ENST00000511686, ENST00000512381, ENST00000513956, ENST00000514382, ENST00000514588_5end |
EntrezGene: | CCND3 |
HGNC: | 1585 |
UniProt: | D6RDL3D6RI00D6RDF8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 1.35e-12 | 18 |
alpha-beta T cell | 1.35e-12 | 18 |
immature T cell | 1.35e-12 | 18 |
mature T cell | 1.35e-12 | 18 |
immature alpha-beta T cell | 1.35e-12 | 18 |
lymphoid lineage restricted progenitor cell | 2.48e-12 | 52 |
lymphocyte | 6.73e-12 | 53 |
common lymphoid progenitor | 6.73e-12 | 53 |
T cell | 5.94e-10 | 25 |
pro-T cell | 5.94e-10 | 25 |
CD8-positive, alpha-beta T cell | 1.55e-08 | 11 |
leukocyte | 1.62e-08 | 136 |
hematopoietic stem cell | 1.87e-07 | 168 |
hematopoietic cell | 3.83e-07 | 177 |
Ontology term | p-value | n |
---|---|---|
adult organism | 5.82e-22 | 114 |