FFCP PHASE1:Hg19::chr12:51664006..51664015,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr12:51664006..51664015,- to FFCP PHASE1:Hg19::chr12:51664006..51664015,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=57228 | |EntrezGene=57228 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26918 | |HGNC=26918 | ||
|TSSclassifier=strong | |||
|UniProt=Q0VAQ4 | |UniProt=Q0VAQ4 | ||
|association_with_transcript=-12bp_to_ENST00000398453,NM_001033873,uc001ryd.1_5end | |||
|cluster_id=chr12:51664006..51664015,- | |||
|description=CAGE_peak_6_at_SMAGP_5end | |||
|id=chr12:51664006..51664015,- | |||
|ontology_enrichment_celltype=CL:0000066!1.05e-21!254;CL:0002076!3.09e-14!43;CL:0000223!5.66e-13!59;CL:0002251!5.28e-08!21 | |||
|ontology_enrichment_celltype_v019=CL:0002076;7.62e-11;42!CL:0002251;3.58e-08;20!CL:0000575;9.98e-08;2!CL:0002368;1.21e-07;13!CL:0000317;3.74e-07;2!CL:1000448;3.74e-07;2!CL:0002308;3.74e-07;2!CL:0002140;3.74e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,8.13e-14,42;CL:0000223,1.57e-13,58;CL:0000066,4.28e-12,253;CL:0002251,4.16e-08,20;CL:0000575,1.12e-07,2;CL:0002368,1.53e-07,13;CL:0000317,5.03e-07,2;CL:1000448,5.03e-07,2;CL:0002308,5.03e-07,2;CL:0002140,5.03e-07,2 | |||
|ontology_enrichment_development_v019=CL:0000223;3.48e-07;58!UBERON:0008814;5.16e-07;2!UBERON:0010056;5.16e-07;2 | |||
|ontology_enrichment_disease=DOID:305!2.19e-12!106;DOID:0050687!3.15e-09!143;DOID:299!5.99e-09!25;DOID:1749!4.36e-08!14 | |||
|ontology_enrichment_disease_v019=DOID:299;3.65e-10;25!DOID:1749;2.24e-09;14 | |||
|ontology_enrichment_disease_v019_2=DOID:305,2.45e-12,106;DOID:0050687,2.76e-10,143;DOID:299,3.62e-10,25;DOID:1749,2.53e-09,14 | |||
|ontology_enrichment_uberon=UBERON:0004119!2.18e-18!169;UBERON:0000925!2.18e-18!169;UBERON:0006595!2.18e-18!169;UBERON:0001007!5.42e-14!155;UBERON:0001555!5.42e-14!155;UBERON:0007026!5.42e-14!155;UBERON:0004921!2.42e-12!129;UBERON:0004185!2.42e-12!129;UBERON:0000077!1.58e-11!130;UBERON:0001004!8.45e-09!72;UBERON:0003104!3.32e-08!238;UBERON:0009142!3.32e-08!238;UBERON:0005631!9.43e-08!14;UBERON:0000158!9.43e-08!14;UBERON:0005153!1.88e-07!37;UBERON:0000344!2.11e-07!12;UBERON:0005911!2.23e-07!82;UBERON:0000065!2.28e-07!53;UBERON:0001041!5.74e-07!98;UBERON:0000464!8.19e-07!104;UBERON:0006554!9.38e-07!44 | |||
|ontology_enrichment_uberon_v019=UBERON:0004921;8.21e-11;33!UBERON:0001723;7.16e-10;3!UBERON:0001033;7.16e-10;3!UBERON:0005409;2.76e-07;22!UBERON:0002419;3.74e-07;2!UBERON:0007771;3.74e-07;2!UBERON:0003297;3.74e-07;2!UBERON:0001821;3.74e-07;2!UBERON:0003487;3.74e-07;2!UBERON:0001820;3.74e-07;2!UBERON:0000485;3.79e-07;7!UBERON:0006562;5.16e-07;2!UBERON:0001987;5.31e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,7.93e-12,160;UBERON:0000925,7.93e-12,160;UBERON:0006595,7.93e-12,160;UBERON:0001723,8.52e-10,3;UBERON:0001033,8.52e-10,3;UBERON:0010056,8.52e-10,3;UBERON:0005631,2.82e-09,14;UBERON:0000158,2.82e-09,14;UBERON:0004921,1.07e-07,118;UBERON:0001007,1.81e-07,145;UBERON:0001555,1.81e-07,145;UBERON:0007026,1.81e-07,145;UBERON:0001987,3.90e-07,4;UBERON:0004340,3.90e-07,4;UBERON:0002419,5.03e-07,2;UBERON:0007771,5.03e-07,2;UBERON:0003297,5.03e-07,2;UBERON:0001821,5.03e-07,2;UBERON:0003487,5.03e-07,2;UBERON:0001820,5.03e-07,2;UBERON:0005089,5.03e-07,2;UBERON:0005088,5.03e-07,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,2.79120467188971,0.873765488520689,2.90143676051299,0,0,0,0,0,0.487932798790507,0,0,0,0,0,0,0,0,0,0,0,0,1.83884244895785,0.6024118375565,2.9580320813343,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383220493601921,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0,0,0,0,0,0,0,0,0.087834785693126,0.130979075497713,4.00724817121796,3.33705998505986,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258416759169329,0,0.33472061276467,0,0,0.24406205754817,0.367663080345869,0,0,0.22452937262617,0,0,0.949265659568129,0.183201743930407,0,0,1.3082821564276,0,0,0,0,0,0,0,0,0,0.269421344139376,0.163461903113459,0,0,0,0,0,0.448346041655403,0,0,0.280901613404497,0.408308342509787,0,0,0,0,0.910161361938026,0,0,0.125118519871964,0,0,0,0,0.113432183160021,0,0,0,0,0.206105058476878,0,0.18611685633159,0.168776332241266,0.0974370051611986,0.252433774244115,0,0,0,0.201504196455281,0,0.193260853163297,0.272746120590835,0,0.121973706129595,0.265059536642971,0.116193942869518,0,0,0,0,0,0,0,0.721879481669586,0.118306800039844,0.168584690078102,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0,1.22988438543114,0,1.20725313949488,0,0.603173834469785,0.0925884451585296,0,0,0,0,0,0,0,0,1.58040879591855,0,0,0,0,0.93733833986777,0.16798212819886,0.567100388969546,0.268675568108545,0.581267877027924,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1466765716419,0.258543431515556,0,0,0,0,0,0,0.266422179016099,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,1.42636905040718,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117141414992713,0,0,0,0,0,0.0868836144680828,0,0,0,0,0,1.5156378572313,0,1.5119514666484,0.248107807818777,0,0,0,0.511707249066704,0.160853921143607,0,0.308419387605311,0.177561725313127,0,0,0,0.966875596732978,0.40101294060657,0.368323955743585,0,0,0,0.451199612907412,0.231046011313244,0,0,0.105551628892876,0,0,0,0,0,0,0.509752546090077,0.831076008928724,0.447749509444357,0,0,0,0,0,0.9273691048295,0,0,1.14853107599234,3.90036147621913,0,0.290012154876366,0,0,0,0,0,0.0852266274161009,0.0890320356467374,0.661139661443912,1.15314040419064,1.14851441245126,1.11273558941105,0,0,0,0,1.06461206063404,0,0,0,0,0.316379424718726,0,0,0,0.318203247925937,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0.143411352204052,0,0,0,0,0,0.75894634753143,0.699869440489966,0.192444225451024,0,0,0.282431402330337,0.86101074534246,3.36942951335251,0.886860307073351,0,0,0,0,0,0,0,0,0,0.106824071127473,1.92495971052672,0.980160863924127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.36277837387947,0,0.121360521749513,0,0,1.19372242368845,0.890894042497916,1.53580351049616,0,0,0,0,0,0,0.552567831062295,0,0,0,0,0.629078458031288,0.716084698702437,0,0.789147245095469,0,0,0,0,0,0.260427761085233,0.61221999997337,0,5.23449862113298,2.2882828526349,1.65471377237555,0,0,0,0,0,0,0,0,0,0.10893846351899,1.39423744278603,0.384751292518985,0,5.99466151408956,2.2439411102443,4.12860013303631,0.31900115973192,0.274792780205587,1.06606955203727,0,0,0,0.225595660617181,0.19606253431774,0.167821586975843,0,0,0.210998064528027,0.163232808159148,3.39247371441458,0,5.97157158647103,0.707660516026713,4.27721101453538,0,0,0,0,0,0,0,1.76098157038881,0,0,1.20990716048664,0,0,0.300646838828985,0,0,0.330991955875499,0,0,1.13843818411917,0,1.56203764501618,1.17590876897253,1.48000651186684,0.52418000472609,0,0.19351266257817,0,0,3.58859361007152,0,0.451961481561065,0,0,0,3.12882212375685,0.480952921509202,1.92107695265417,0,1.44090417154106,0,0,0,0,1.64985824231757,0,0,0,0,0,0,0,0,0,0,0,0,5.19165401297377,0,0,0,0,2.32991899054908,0.0787831823072236,0,0,0,0,0,0,0,0,0,0.2249738915515,0,0,2.68347750079413,0.315222829196793,0.314727528809989,0.528001682597033,0,0,0,0,0,0,0,0,0,0,0,0.226624183040251,0,0,0,0.13223260174269,0,2.11444506695002,0.533937062838473,0,0.414239055347196,0,0,0,1.27668251554036,0,0,0,0,2.04170325125305,0,0,0,0,0,0,0,0,0,0,0.235265819698172,0,0,0.149254802886874,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343395705182793,0,0,0,0,0.260994291965212,0,0.463044948647668,0,0.179088841081487,0,0,0.176689145945881,0,0,0,0,0,0,0,0,0.163565394255844,0,0,1.69049698686902,0,0,0,0,0,0.139879507719444,0,0,0,0.157265941855896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.490738592505128,1.29766695682514,0.733714394086716,1.27078232765372,0,0,0,0,0.20170506870352,0,4.7143205006656,0,1.03499260351932,0,0,0,0,0,0.548257766857182,0.496211178389294,0,1.14986184875636,0.535701835878287,0,0,0,1.33053555243958,0,0,0,0,0.118193840883968,1.22354542081276,0.39246546425257,0,1.68163297988273,0,0.215927591218621,0,0,0,0,0,0,0,0,2.76503864725637,0,0.354996002191696,0.0852134047591577,0,0.4582137370881,0,0,0.111855431797792,0.687051635306701,3.41370189950354,0,0,0,0.971421986118279,0,0,0,0.5647304101948,0,0.150962843566674,0.694567422971502,0.874238242015829,0,0.245148321753905,0,0,0,0,0.169927114687817,0,0,0,1.42843150884526,0,0.882655033580851,2.191009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| 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| ||
|short_description=p6@SMAGP | |||
}} | }} |
Latest revision as of 20:02, 18 September 2015
Short description: | p6@SMAGP |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_SMAGP_5end |
Coexpression cluster: | NA |
Association with transcript: | -12bp_to_ENST00000398453, NM_001033873, uc001ryd.1_5end |
EntrezGene: | SMAGP |
HGNC: | 26918 |
UniProt: | Q0VAQ4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 8.13e-14 | 42 |
endodermal cell | 1.57e-13 | 58 |
epithelial cell | 4.28e-12 | 253 |
epithelial cell of alimentary canal | 4.16e-08 | 20 |
corneal epithelial cell | 1.12e-07 | 2 |
respiratory epithelial cell | 1.53e-07 | 13 |
sebum secreting cell | 5.03e-07 | 2 |
epithelial cell of sweat gland | 5.03e-07 | 2 |
epithelial cell of skin gland | 5.03e-07 | 2 |
acinar cell of sebaceous gland | 5.03e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 7.93e-12 | 160 |
endoderm | 7.93e-12 | 160 |
presumptive endoderm | 7.93e-12 | 160 |
tongue | 8.52e-10 | 3 |
gustatory system | 8.52e-10 | 3 |
future tongue | 8.52e-10 | 3 |
extraembryonic membrane | 2.82e-09 | 14 |
membranous layer | 2.82e-09 | 14 |
subdivision of digestive tract | 1.07e-07 | 118 |
digestive system | 1.81e-07 | 145 |
digestive tract | 1.81e-07 | 145 |
primitive gut | 1.81e-07 | 145 |
placenta | 3.90e-07 | 4 |
allantois | 3.90e-07 | 4 |
skin gland | 5.03e-07 | 2 |
epidermis gland | 5.03e-07 | 2 |
gland of integumental system | 5.03e-07 | 2 |
sebaceous gland | 5.03e-07 | 2 |
skin sebaceous gland | 5.03e-07 | 2 |
sweat gland | 5.03e-07 | 2 |
sweat gland placode | 5.03e-07 | 2 |
sebaceous gland placode | 5.03e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 2.45e-12 | 106 |
cell type cancer | 2.76e-10 | 143 |
adenocarcinoma | 3.62e-10 | 25 |
squamous cell carcinoma | 2.53e-09 | 14 |