FFCP PHASE1:Hg19::chr21:46875395..46875406,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=80781 | |EntrezGene=80781 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2195 | |HGNC=2195 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000355480_5end | |association_with_transcript=0bp_to_ENST00000355480_5end | ||
|cluster_id=chr21:46875395..46875406,+ | |||
|coexpression_cluster_id=C5 | |coexpression_cluster_id=C5 | ||
|description=CAGE_peak_3_at_COL18A1_5end | |description=CAGE_peak_3_at_COL18A1_5end | ||
|id=chr21:46875395..46875406,+ | |id=chr21:46875395..46875406,+ | ||
|ontology_enrichment_celltype=CL:0000057!2.42e-09!75 | |ontology_enrichment_celltype=CL:0000057!2.42e-09!75 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.41e-34!115;UBERON:0000475!1.07e-16!365;UBERON:0004111!1.50e-14!241;UBERON:0001049!7.84e-14!57;UBERON:0005068!7.84e-14!57;UBERON:0006241!7.84e-14!57;UBERON:0007135!7.84e-14!57;UBERON:0000477!1.68e-13!286;UBERON:0000955!3.59e-13!69;UBERON:0006238!3.59e-13!69;UBERON:0002616!3.94e-13!59;UBERON:0001017!2.14e-11!82;UBERON:0000483!5.68e-11!309;UBERON:0000073!8.76e-11!94;UBERON:0001016!8.76e-11!94;UBERON:0005743!9.39e-11!86;UBERON:0003075!1.52e-10!86;UBERON:0007284!1.52e-10!86;UBERON:0000119!1.71e-10!312;UBERON:0000025!1.75e-10!194;UBERON:0000481!1.90e-10!347;UBERON:0002346!7.75e-10!90;UBERON:0000468!2.99e-09!659;UBERON:0000153!1.69e-08!129;UBERON:0007811!1.69e-08!129;UBERON:0003076!4.06e-08!15;UBERON:0003057!4.06e-08!15;UBERON:0000033!4.40e-08!123;UBERON:0000467!4.60e-08!625;UBERON:0000480!6.00e-08!626;UBERON:0003080!6.63e-08!42;UBERON:0002298!1.07e-07!8;UBERON:0000062!1.37e-07!511;UBERON:0002780!1.72e-07!41;UBERON:0001890!1.72e-07!41;UBERON:0006240!1.72e-07!41;UBERON:0004732!3.34e-07!13 | |ontology_enrichment_uberon=UBERON:0007023!2.41e-34!115;UBERON:0000475!1.07e-16!365;UBERON:0004111!1.50e-14!241;UBERON:0001049!7.84e-14!57;UBERON:0005068!7.84e-14!57;UBERON:0006241!7.84e-14!57;UBERON:0007135!7.84e-14!57;UBERON:0000477!1.68e-13!286;UBERON:0000955!3.59e-13!69;UBERON:0006238!3.59e-13!69;UBERON:0002616!3.94e-13!59;UBERON:0001017!2.14e-11!82;UBERON:0000483!5.68e-11!309;UBERON:0000073!8.76e-11!94;UBERON:0001016!8.76e-11!94;UBERON:0005743!9.39e-11!86;UBERON:0003075!1.52e-10!86;UBERON:0007284!1.52e-10!86;UBERON:0000119!1.71e-10!312;UBERON:0000025!1.75e-10!194;UBERON:0000481!1.90e-10!347;UBERON:0002346!7.75e-10!90;UBERON:0000468!2.99e-09!659;UBERON:0000153!1.69e-08!129;UBERON:0007811!1.69e-08!129;UBERON:0003076!4.06e-08!15;UBERON:0003057!4.06e-08!15;UBERON:0000033!4.40e-08!123;UBERON:0000467!4.60e-08!625;UBERON:0000480!6.00e-08!626;UBERON:0003080!6.63e-08!42;UBERON:0002298!1.07e-07!8;UBERON:0000062!1.37e-07!511;UBERON:0002780!1.72e-07!41;UBERON:0001890!1.72e-07!41;UBERON:0006240!1.72e-07!41;UBERON:0004732!3.34e-07!13 | ||
|ontology_enrichment_uberon_v019=UBERON:0002298;9.21e-10;6!UBERON:0004732;1.63e-08;13!UBERON:0007023;2.55e-08;114!UBERON:0004733;2.84e-07;12!UBERON:0002028;2.84e-07;12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,4.21e-33,114;UBERON:0011216,6.57e-11,223;UBERON:0004111,5.95e-10,240;UBERON:0002298,7.50e-10,6;UBERON:0003076,5.55e-09,15;UBERON:0003057,5.55e-09,15;UBERON:0004732,1.38e-08,13;UBERON:0004921,7.29e-08,118;UBERON:0004733,2.42e-07,12;UBERON:0002028,2.42e-07,12;UBERON:0007277,2.42e-07,12;UBERON:0004797,5.50e-07,7;UBERON:0001049,7.01e-07,56;UBERON:0005068,7.01e-07,56;UBERON:0006241,7.01e-07,56;UBERON:0007135,7.01e-07,56;UBERON:0003075,7.92e-07,82;UBERON:0007284,7.92e-07,82;UBERON:0000025,9.56e-07,192 | |||
|phase1_expression=0.181678379270557,0.428201047781966,2.25527046553554,1.0007329835313,1.34088328328186,2.61701557230111,0,0.631719873426831,0.783556884599516,0.491467873003018,0.697801167972428,0,0,0,0.331397375727916,0,0,0,0,0.123121058076788,0.204000691244253,0.313454721478088,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,24.3806866313962,0,0.767175371061182,0,1.00267582127178,0,0,0,0,0.221729397462564,0,2.94702919869853,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.402829317109147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.379891534993739,1.85372853138506,6.02356903572509,1.06400514659507,1.68203280042692,0,0.24666754841716,1.24484414159907,0,0.326923806226917,0.454072282934794,0.576175924479999,0,0.312160076830321,0,0.149448680551801,0,0,0,0,0,0,0,0.741800787835671,6.37112953356618,10.0606539854273,0,0,0.277064115484183,0,0,0.751190294532984,0.226864366320042,0.89694817844431,1.70845911054854,0.423863802319124,1.20036438433761,1.13357782162283,1.54584324027377,1.48893485065272,0.843881661206331,0.389748020644795,0.504867548488229,1.10459878370759,0.80823028409406,0.710019185033229,0.201504196455281,0.169560592310488,0,0.545492241181669,0.286804595389004,0,0,0,0,0,0,0,0,0,0.928735856063958,2.88751792667834,0,0,0,0,0,0,0,0,0,0,0,2.4694440679884,2.94017422771084,34.2238594018943,21.6221987669078,20.0868568271677,0,0,0,0,0,0,0.0925884451585296,0,0,0,0,1.05667824812239,0.144366447761074,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.57656445851882,0,0,0,0,0,0,2.00169191121407,2.71310802695722,0.823240336780769,0,1.06617584622764,0,0.301439377059586,2.61460037580088,0.399891964728228,0,0,0,0,0,0,0.144781306667579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.613457458595699,1.00034104211935,0,2.07970861530807,0.535286966391485,0.315404830067869,2.57711112983969,0,0,0,0,0.368738337083406,0,0.195801157462741,0,0,0,0,0,0,0,0.992431231275107,1.53461973288062,0.561320188866147,1.66580894032411,1.53512174720011,0.482561763430822,1.48418066444991,0.154209693802656,0.710246901252508,0.821271560138091,0.519254429183621,0.464841513839837,0,0.802025881213139,0.276242966807689,3.78887678943202,0.728364672026868,5.11385218341754,0,0,0,0,0,0,0,0,0,0,0,0.254876273045038,0,0,0,0,0,0,0,20.1960382829536,0.366277859273374,0.247528499761764,0,0,0,0,0.462145851343933,0.307007349452259,0,0.644521469209642,0.870100163485371,0,0.534192213880424,0.165284915360978,0,0.382838137483752,0.10115778085555,0,1.25924938732256,0,0.308033580176089,0,0.869932992075073,0,0,0,0.949138274156178,1.14378116354295,1.27948895655667,0.42793898803392,0.636406495851874,0,0.899362287916574,1.64722217841633,0.824686816419805,0.202182481573316,0,0,0.48763373908959,0.243713489631284,0,2.18399858252777,4.24216295861138,1.13008116620243,0.551365343546124,0,0,2.89387767133344,0,0.608731130888112,0,0.281695602532241,0.143411352204052,0.0982490410131212,0.7133421029625,0,1.68886108238131,0.987884678879706,0,0,0.0962221127255121,0,0,19.3936229600165,0.43050537267123,0,0.443430153536676,0.459446800413919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19538809540204,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0.111308705022906,0,0,3.78571177677032,1.93398740871803,0,0,0,0,0,0,0,13.5141465722599,0,0,1.93866549219044,1.57705766875147,0,0,0,1.44999915086959,0,0.762760950878299,0,0.344743373241465,0,0,0,0.241192877250816,0,3.31737779793674,1.47773809476774,0,0,0,4.46311499322023,0.113942055847001,0,0,0,0,0.366390373607449,0,0,0,0,0,0,0,0,0,0,0,0,0,2.98578579323551,1.32686346755009,1.22206028986725,0,0,0,5.8638985693189,3.21031058919516,2.34264445725339,0.182454789215666,0,0,1.97292201424695,2.41981432097328,0,1.0741718536843,0,0,0,0,0,0,0,0,0,0,0,13.4539534546363,0.171986032471617,0,0,0,1.26085721434945,0,0.90392296312213,0,0,0.379864775735272,0,0.320635281006135,2.56143593687223,0,0,0,0.343189995723929,0,0,0.471388069233591,0.271808412147228,0.209205692624666,0.509991088181609,0.577901179803038,1.80126086612937,2.0535806833799,0,0,0,3.6306712165393,4.35404805622199,1.43574604915363,0.798716001995964,1.71690419254628,1.33902874465124,1.2764859772478,1.08089965062721,0,0,0,0,0,0,0.795229689809303,0.408610218334727,0,0,0,0,0,0.485996453264197,0,0.551639951094387,0.157363764404994,0,0,0,5.00286728461357,0.662091970365432,0,1.62899880526114,0.864221491201268,0.326587360109409,0,0,2.3854323049959,0,39.129446392048,19.8760333368332,4.91275234173892,3.70251284879532,0,0,2.88326013932776,4.08731193259131,3.31391244277756,0,0,0,0,1.63205341010842,0,0.306345576763462,0.655745261419609,2.51286554000375,0.886068179966986,0.732157589411779,0.500763722825999,5.73409195690071,3.43880059764242,4.90561583236929,0,0,0,0,0,0,0,0.149254802886874,0,1.10961172300523,0,1.0062716070103,0,0.915360273587694,3.93200401784422,0.310874401165561,0,0,0,0.155262956876259,0.829412415681711,0.53168342911599,0,2.25386413495828,3.04644169735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| ||
|short_description=p3@COL18A1 | |short_description=p3@COL18A1 | ||
}} | }} |
Latest revision as of 20:51, 18 September 2015
Short description: | p3@COL18A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_COL18A1_5end |
Coexpression cluster: | C5_Hepatocyte_liver_hepatocellular_Intestinal_kidney_small_pancreas |
Association with transcript: | 0bp_to_ENST00000355480_5end |
EntrezGene: | COL18A1 |
HGNC: | 2195 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 4.21e-33 | 114 |
organ system subdivision | 6.57e-11 | 223 |
anatomical conduit | 5.95e-10 | 240 |
brainstem | 7.50e-10 | 6 |
posterior neural tube | 5.55e-09 | 15 |
chordal neural plate | 5.55e-09 | 15 |
segmental subdivision of nervous system | 1.38e-08 | 13 |
subdivision of digestive tract | 7.29e-08 | 118 |
segmental subdivision of hindbrain | 2.42e-07 | 12 |
hindbrain | 2.42e-07 | 12 |
presumptive hindbrain | 2.42e-07 | 12 |
blood vessel layer | 5.50e-07 | 7 |
neural tube | 7.01e-07 | 56 |
neural rod | 7.01e-07 | 56 |
future spinal cord | 7.01e-07 | 56 |
neural keel | 7.01e-07 | 56 |
neural plate | 7.92e-07 | 82 |
presumptive neural plate | 7.92e-07 | 82 |
tube | 9.56e-07 | 192 |