FFCP PHASE1:Hg19::chr12:52430894..52430952,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr12:52430894..52430952,+ to FFCP PHASE1:Hg19::chr12:52430894..52430952,+: NSchange) |
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(9 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3164 | |EntrezGene=3164 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7980 | |HGNC=7980 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-8bp_to_ENST00000546842_5end | |||
|cluster_id=chr12:52430894..52430952,+ | |||
|description=CAGE_peak_3_at_NR4A1_5end | |||
|id=chr12:52430894..52430952,+ | |||
|ontology_enrichment_celltype=CL:0002057!1.80e-13!42;CL:0000860!1.81e-12!45 | |||
|ontology_enrichment_celltype_v019=CL:0000860;7.89e-10;33!CL:0002057;7.89e-10;33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,2.26e-13,42;CL:0002057,2.26e-13,42;CL:0000473,8.56e-10,48;CL:0000234,8.56e-10,48;CL:0000557,9.69e-08,67;CL:0000766,1.83e-07,72;CL:0000839,6.41e-07,66 | |||
|ontology_enrichment_development_v019=CL:0002057;3.24e-10;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3095;6.03e-07;22!DOID:2994;6.03e-07;22 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,5.83e-07,22;DOID:2994,5.83e-07,22 | |||
|ontology_enrichment_uberon=UBERON:0000468!7.88e-13!659;UBERON:0000062!2.51e-12!511;UBERON:0007023!3.57e-11!115;UBERON:0000467!7.14e-10!625;UBERON:0000480!8.06e-10!626;UBERON:0000922!1.45e-08!612;UBERON:0002050!5.50e-08!605;UBERON:0005423!5.50e-08!605;UBERON:0000923!6.49e-08!604;UBERON:0005291!6.49e-08!604;UBERON:0006598!6.49e-08!604;UBERON:0002532!6.49e-08!604 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,7.49e-10,114;UBERON:0001474,1.70e-07,82;UBERON:0001434,5.22e-07,100 | |||
|phase1_expression=4.36028110249336,3.42560838225573,5.3562673556469,6.00439790118782,1.34088328328186,8.72338524100369,0,0,0.522371256399677,0.491467873003018,2.09340350391728,1.09220686065086,1.31883489114227,0.866364470720326,1.65698687863958,0,0.602694528023977,0.730310090387373,1.46379839637152,0.369363174230364,1.22400414746552,0.626909442956176,0.85870796139317,0.410623275218653,0.753255837568817,0.305653622991805,0.328402357799783,0.157421562627358,1.18009283054671,1.15148819429164,2.94150634300544,0,0.30120591877825,0,0,0,0,6.64794490238253,4.41197784434312,1.95309783644267,0,0,0,0.726991193897824,1.88937971844405,2.18325655069035,14.1781712512468,13.9797081927421,16.4144376574405,6.90461741573161,4.86705342405291,2.60130452877444,13.7898272294647,17.4280864567633,13.5426486594342,7.52969358170419,7.36846605156184,5.16864014223695,17.7528657575123,14.4418062184242,17.9014395223732,0.989553900560148,0.797854630486527,0.426224750532694,11.6083695451434,5.6738522469114,2.4912889959823,4.52247597462138,5.21482918420201,5.64690996233303,3.02699751316684,6.99727508376373,4.1140110367315,0.845021145247767,3.4016687994407,2.30624510059213,0.786300418025466,0.150176892841506,0.16072558669708,3.99017841237748,5.17183360717634,6.21058122799755,0,0,0,0,0,0.574752439954483,0.661044872784862,0,0,0.587237189370939,0.382273228125229,1.32171328579026,3.92355994087075,0.526768169550154,0,0.393010762749165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383220493601921,0,0,0,0,0,0,0.127986611154418,0,0,0,0.201606743224732,0.267440195783507,0.144824403882799,0,0,2.04580098949649,0.722878304769133,2.00535164254356,3.91085601194224,0,4.37971383272372,0.0945348171640679,0.221729397462564,0.351339142772504,3.53643503843824,0,0,0,0,0.26591592103773,0.476981248610684,0.571994910780128,0,0,0,0,0.56530794192401,0.419499436209906,0.550236083880135,0.208994966536811,0.258416759169329,1.06729878806013,0.33472061276467,0,0.760272105718513,0.24406205754817,0,0,0.535798369704479,1.57170560838319,1.0135033243499,1.53316637465883,1.89853131913626,1.64881569537367,2.63560834872127,3.87780264148325,0,1.49091585508596,2.15271869829786,0.794455084879313,1.14734648299525,2.4826786753885,1.12135520028461,0,0.49333509683432,0.622422070799533,0.942974704487816,0.490385709340376,0.302714855289863,0,0.468642863667593,0.624320153660641,0,1.64393548606981,0.939475989150119,0.809364721840658,0.842704840213491,1.42907919878425,1.22834317311768,2.37649296704261,3.56400857184616,2.71993622206413,0.910161361938026,2.87447256726495,1.17835279767846,1.00094815897571,0.831192346452549,0.438977620880838,2.14541457059314,6.00952235626387,0,2.51145489964407,0.640672166455702,1.27159140695737,1.20036438433761,1.03052529238439,1.03056216018252,1.8611685633159,2.19409231913646,1.94874010322397,1.26216887122057,0.736399189138395,1.77810662500693,1.77504796258307,0.806016785821122,0.67824236924195,0.193260853163297,0,0,1.70763188581434,0.662648841607426,1.85910308591229,1.24393266018445,0.504641701751257,2.55484151353081,0,0.643240938192885,0,0,0,0.354920400119532,0.674338760312407,0.482022059766964,0.772057809126758,0.435758888184812,0.71181185733329,2.15730093056263,2.35465758150415,1.15424147083917,0,1.40241773803446,0.4115740113314,1.47008711385542,0,0.982827216677626,1.18157981336281,0,3.93563003337963,0.171567810298526,0.329250856225877,0,1.00528972411631,0.277765335475589,0.977424915930974,5.19967392639789,0,0.34779121492523,0.70445216541493,0.577465791044295,0.925971025153221,0.190254152234598,0.790204397959275,0,0,0,0,0,0.16798212819886,0.141775097242386,0.179117045405697,0.581267877027924,1.53353071666084,0,3.43388892651582,26.1233425581373,25.7974716616361,39.3876392290305,6.85777258355426,8.78573378784039,7.03304683260282,0,8.3290269089692,6.30720421472227,4.85904935471983,0.560655421726804,0,0.22001485746285,0.129271715757778,0,1.690605505112,2.12750493267896,2.08014873822732,0.771622122786426,2.83698264046557,0.532844358032199,1.28680194292333,1.08524321078289,1.64648067356154,0,2.48774364119782,1.58390374586686,0,0,0.699810938274399,0,0,0,0,0,1.42636905040718,1.15825045334063,1.43833425785268,0.537182889719687,0.112085143993527,0.197030760201927,0,0.128343036279748,0.508189248444927,0,0.773288812777695,1.34013012267479,3.82763250991898,0.749007023947182,0,0,1.8403723757871,0.500170521059677,0.271265023699736,2.07970861530807,1.78428988797162,0.788512075169673,3.16281820480326,0,0,3.10419213877515,0.664225598535437,1.10621501125022,0.781952530212746,0,0.343143423810856,0.82707210449155,3.45142721309787,1.81436848265855,1.21251028578504,0,1.20956117331872,3.2254015016441,4.60385919864187,5.05188169979532,3.33161788064823,1.02341449813341,4.02134802859019,5.93672265779964,0.616838775210622,0.177561725313127,0.246381468041427,0.519254429183621,0.581051892299796,7.6141453242722,0,0.460404944679482,0.229628896329213,0.364182336013434,2.36023946926963,0.902399225814824,1.15523005656622,0.784349769176855,0,0.422206515571503,1.13733384070897,0.340187410553031,0.647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| ||
|short_description=p3@NR4A1 | |||
}} | }} |
Latest revision as of 21:03, 18 September 2015
Short description: | p3@NR4A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_NR4A1_5end |
Coexpression cluster: | NA |
Association with transcript: | -8bp_to_ENST00000546842_5end |
EntrezGene: | NR4A1 |
HGNC: | 7980 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 2.26e-13 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.26e-13 | 42 |
defensive cell | 8.56e-10 | 48 |
phagocyte | 8.56e-10 | 48 |
granulocyte monocyte progenitor cell | 9.69e-08 | 67 |
myeloid leukocyte | 1.83e-07 | 72 |
myeloid lineage restricted progenitor cell | 6.41e-07 | 66 |
Ontology term | p-value | n |
---|---|---|
adult organism | 7.49e-10 | 114 |
bone element | 1.70e-07 | 82 |
skeletal system | 5.22e-07 | 100 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 5.83e-07 | 22 |
germ cell cancer | 5.83e-07 | 22 |