FFCP PHASE1:Hg19::chr2:182322965..182322977,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3676 | |EntrezGene=3676 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6140 | |HGNC=6140 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000478440_5end | |association_with_transcript=0bp_to_ENST00000478440_5end | ||
|cluster_id=chr2:182322965..182322977,+ | |||
|coexpression_cluster_id=C1481 | |||
|description=CAGE_peak_13_at_ITGA4_5end | |description=CAGE_peak_13_at_ITGA4_5end | ||
|id=chr2:182322965..182322977,+ | |id=chr2:182322965..182322977,+ | ||
|ontology_enrichment_celltype=CL:0000037!1.92e-63!172;CL:0000566!1.92e-63!172;CL:0000988!1.27e-57!182;CL:0002032!7.02e-57!165;CL:0000837!7.02e-57!165;CL:0000738!5.58e-49!140;CL:0002087!6.46e-44!119;CL:0002031!1.96e-41!124;CL:0000542!2.47e-30!53;CL:0000051!2.47e-30!53;CL:0000838!1.41e-29!52;CL:0000763!7.35e-26!112;CL:0000049!7.35e-26!112;CL:0000134!3.26e-20!358;CL:0002320!4.80e-19!365;CL:0000219!2.29e-16!390;CL:0002057!7.40e-16!42;CL:0000084!1.15e-15!25;CL:0000827!1.15e-15!25;CL:0000791!2.21e-15!18;CL:0000789!2.21e-15!18;CL:0002420!2.21e-15!18;CL:0002419!2.21e-15!18;CL:0000790!2.21e-15!18;CL:0000839!1.09e-14!70;CL:0000766!2.62e-14!76;CL:0000860!4.21e-14!45;CL:0000625!1.00e-13!11;CL:0002194!5.78e-13!63;CL:0000576!5.78e-13!63;CL:0000040!5.78e-13!63;CL:0000559!5.78e-13!63;CL:0000048!1.15e-12!430;CL:0000034!1.21e-12!444;CL:0000557!1.85e-12!71;CL:0002009!3.29e-12!65;CL:0000945!3.80e-12!24;CL:0000826!3.80e-12!24;CL:0000723!5.72e-12!436;CL:0000236!2.02e-09!14;CL:0002393!4.36e-08!9;CL:0002397!4.36e-08!9 | |ontology_enrichment_celltype=CL:0000037!1.92e-63!172;CL:0000566!1.92e-63!172;CL:0000988!1.27e-57!182;CL:0002032!7.02e-57!165;CL:0000837!7.02e-57!165;CL:0000738!5.58e-49!140;CL:0002087!6.46e-44!119;CL:0002031!1.96e-41!124;CL:0000542!2.47e-30!53;CL:0000051!2.47e-30!53;CL:0000838!1.41e-29!52;CL:0000763!7.35e-26!112;CL:0000049!7.35e-26!112;CL:0000134!3.26e-20!358;CL:0002320!4.80e-19!365;CL:0000219!2.29e-16!390;CL:0002057!7.40e-16!42;CL:0000084!1.15e-15!25;CL:0000827!1.15e-15!25;CL:0000791!2.21e-15!18;CL:0000789!2.21e-15!18;CL:0002420!2.21e-15!18;CL:0002419!2.21e-15!18;CL:0000790!2.21e-15!18;CL:0000839!1.09e-14!70;CL:0000766!2.62e-14!76;CL:0000860!4.21e-14!45;CL:0000625!1.00e-13!11;CL:0002194!5.78e-13!63;CL:0000576!5.78e-13!63;CL:0000040!5.78e-13!63;CL:0000559!5.78e-13!63;CL:0000048!1.15e-12!430;CL:0000034!1.21e-12!444;CL:0000557!1.85e-12!71;CL:0002009!3.29e-12!65;CL:0000945!3.80e-12!24;CL:0000826!3.80e-12!24;CL:0000723!5.72e-12!436;CL:0000236!2.02e-09!14;CL:0002393!4.36e-08!9;CL:0002397!4.36e-08!9 | ||
|ontology_enrichment_celltype_v019=CL:0000625;4.66e-26;11!CL:0000791;4.51e-25;18!CL:0000789;4.51e-25;18!CL:0002419;4.51e-25;18!CL:0000084;5.36e-23;25!CL:0000542;1.94e-17;53!CL:0000236;1.91e-11;13!CL:0000875;7.81e-10;3!CL:0002396;7.81e-10;3!CL:0000623;2.15e-09;3!CL:0002087;2.39e-07;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,1.05e-29,52;CL:0000542,5.25e-29,53;CL:0000051,5.25e-29,53;CL:0000037,2.39e-28,168;CL:0000988,2.90e-26,177;CL:0000625,3.29e-26,11;CL:0000791,3.64e-25,18;CL:0000789,3.64e-25,18;CL:0002420,3.64e-25,18;CL:0002419,3.64e-25,18;CL:0000790,3.64e-25,18;CL:0000738,1.70e-23,136;CL:0002032,4.73e-23,161;CL:0000837,4.73e-23,161;CL:0000084,5.40e-23,25;CL:0000827,5.40e-23,25;CL:0002087,1.09e-21,115;CL:0002031,5.67e-19,120;CL:0002393,4.18e-11,9;CL:0002397,4.18e-11,9;CL:0000236,1.51e-10,14;CL:0000875,8.20e-10,3;CL:0002396,8.20e-10,3;CL:0000623,2.64e-09,3;CL:0000825,2.64e-09,3;CL:0000134,1.17e-07,354;CL:0002320,2.73e-07,361 | |||
|ontology_enrichment_development_v019=CL:0000790;4.51e-25;18!CL:0000051;1.94e-17;53 | |||
|ontology_enrichment_disease=DOID:2531!1.18e-13!51;DOID:0060083!1.18e-13!51;DOID:1240!2.19e-13!39;DOID:8692!1.86e-11!31 | |ontology_enrichment_disease=DOID:2531!1.18e-13!51;DOID:0060083!1.18e-13!51;DOID:1240!2.19e-13!39;DOID:8692!1.86e-11!31 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!3.90e-18!102;UBERON:0003061!3.90e-18!102;UBERON:0002384!1.81e-17!375;UBERON:0002193!1.16e-15!112;UBERON:0002371!1.88e-10!80;UBERON:0001474!2.10e-10!86;UBERON:0002405!1.44e-07!115;UBERON:0004765!3.98e-07!101;UBERON:0001434!3.98e-07!101 | |ontology_enrichment_uberon=UBERON:0002390!3.90e-18!102;UBERON:0003061!3.90e-18!102;UBERON:0002384!1.81e-17!375;UBERON:0002193!1.16e-15!112;UBERON:0002371!1.88e-10!80;UBERON:0001474!2.10e-10!86;UBERON:0002405!1.44e-07!115;UBERON:0004765!3.98e-07!101;UBERON:0001434!3.98e-07!101 | ||
|ontology_enrichment_uberon_v019=UBERON:0002370;5.09e-07;2!UBERON:0005058;5.09e-07;2!UBERON:0009113;5.09e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,1.58e-07,4;UBERON:0005058,1.58e-07,4;UBERON:0009113,1.58e-07,4;UBERON:0003295,1.58e-07,4;UBERON:0005562,1.58e-07,4;UBERON:0002384,8.62e-07,371 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125542639594803,0.305653622991805,0.410502947249729,0.550975469195755,0.393364276848904,4.60595277716655,0.619264493264304,0,0,0,0.0774672005803016,0.568676929949686,0.587200878669695,0,0.802177789880567,0.651032612147555,0,0.32389366601898,0.257575567634187,0.290796477559129,0.377875943688809,0.242584061187816,0.232429036905685,0.822335776043652,0,0.575384784644301,0.256160706529101,0.945928919554341,0.344745680736619,0,0,0.564727018627814,0,0.224723484445085,0.306083892370903,0.320929027076094,0,0.329851300186716,0.398927315243264,2.13112375266347,0.580418477257168,0,0,0.251248665256743,1.0429658368404,0.868755378820466,0,0,0.632924774881769,1.90129757680748,2.33864729961548,2.09658645508376,0.44931452458598,0.600707571366025,0.964353520182481,3.13514018115373,4.17725022118089,3.10529061399878,1.75996244461323,0.546138611262131,0,2.56038133539904,1.20118796110804,1.72425731986345,1.32208974556972,0.954053754535364,0.569212969109448,1.17447437874188,1.14681968437569,1.32171328579026,1.68152568894461,2.10707267820062,1.37696839079683,0,0.822405995998037,2.00623794468814,0.651844533267181,0.946895611469467,1.94826728407911,2.22820913770347,1.17842362989935,0.886135578334485,2.16643091012012,1.0247305578054,1.43065282315866,0.986627427622057,3.03985019564433,2.89803085735052,1.33457906845854,1.07016331235885,0,5.77877647757588,5.74830740402882,3.09264700934367,8.09663014462409,2.54852331459277,4.55758417699493,0.950452044448374,4.06552821509986,5.75939750194883,9.99445812418767,5.91943130110042,7.39015197228942,3.42731463482045,3.4767225451856,2.60683926989038,0,0,0,0,0,0,0,0,0.0945348171640679,0,0.087834785693126,0.130979075497713,0,0,0,0.348259474598534,0.132957960518865,0.953962497221368,2.28797964312051,1.11437250398869,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134710672069688,0,0,0,0,0,0,0.149448680551801,0.117434498643765,0,0,0,0,0.103325781175765,0,0,0,0,0,0,0,0,0,0,0.226864366320042,0,0,0,0,0,0,0.37223371266318,0.168776332241266,0,0,0.0920498986422993,0,0,0.10075209822764,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.20731549707325,0,0,0,0,0,0,0,0,0,0,0.117408694235822,0,0,0,0,0,0,0,0.148631162288728,0,0,0,0,0,0,0,0,0.207328115540772,0.576479813667846,0.25248486685276,0,0,0,0,0,0,0,0.112131084345361,0.43596006883328,0,0,0,0,0.26593811658487,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.94061520403854,2.15627574859517,2.18183161675572,0,0,0,0,0,0,0,0.414415513436035,0,0,0,0,0,0,0,0,0,0,0,0,0.260650843404249,0,0,1.44737618286021,0.862856803274467,1.70764092485511,0,0,0,0.496215615637554,0.306923946576125,0,0,0,0.160853921143607,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.438519753291869,1.0457418040996,0,0,0,0,0.915694648183434,1.23764249880882,0,0,0,0,0,0,0.137836572484531,0.107420244868274,0,0.170453254832202,0.0890320356467374,0,0,0,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179872457583315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.53723804616085,0,0.569647187174163,0.952927101831156,0.822724546172388,2.59389324477087,2.70015718619057,1.58625035258854,0,0,0,0.743212700502875,1.15415370381156,2.27653898714925,0.797131363644112,0.59873811429845,0.5745161103971,0.423347165447766,0.324621940274555,1.68478306868075,0.228234679033192,0.626719583092093,0,1.18504244461122,0.642352300414798,1.61439765752838,0.851692475380653,1.71752672377882,0,0.447352215784832,0.333698283423817,0.586164286206121,0.556812347790485,0,2.43410110628385,0.66614393599564,2.81974010175699,0,0,0,0,0,0,0,0,0,0,0,0,0.211125408127993,0.19924798825107,0.276283915531148,0,0,0.492339221844278,0,0,0,0,0.197286811273867,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,2.04386596391473,0.156980256395025,1.16348177330109,0,0,0,0,1.27149263184303,0,0,0,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,0,0,0,0,0,0.505492637027904,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0.288950589901519,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0.134366944973453,0,0,0,0,0,0,0.169346664131569,0,0,0,0,0,0,0,0,0,0.0788057072991982,0,0,0,0,0,0,0,0,0,0,0,0.164185041498678,0,0,0,0,0,0,0,0,0.320362237703084,0.628817220398664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.124980407962107,0,0.285465333544967,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.398095888698616,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.16916185303633,0.265729680626726,0.817826971279221,0,0,0,0.79994958341972,1.17360902663555,0,0,0.184105950251841,0,0,0,0,0,0,0,0,0,0,0,0.23658523500376,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225630985047772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.3451348888753,0,0,0.0887023701626388,0.460935950223117,0,0,0,0,0,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0.430227358820278,0,0,0.423387050190929,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109940516745429,0,0.0771741581079447,0,0,0,0,0,0,0,0,0.751871343838829,0.386747327841463,0.799529247399431,0,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| ||
|short_description=p13@ITGA4 | |short_description=p13@ITGA4 | ||
}} | }} |
Latest revision as of 21:12, 18 September 2015
Short description: | p13@ITGA4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_13_at_ITGA4_5end |
Coexpression cluster: | C1481_CD4_CD8_thymus_CD14CD16_CD14_granulocyte_CD19 |
Association with transcript: | 0bp_to_ENST00000478440_5end |
EntrezGene: | ITGA4 |
HGNC: | 6140 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 1.05e-29 | 52 |
lymphocyte | 5.25e-29 | 53 |
common lymphoid progenitor | 5.25e-29 | 53 |
hematopoietic stem cell | 2.39e-28 | 168 |
hematopoietic cell | 2.90e-26 | 177 |
CD8-positive, alpha-beta T cell | 3.29e-26 | 11 |
mature alpha-beta T cell | 3.64e-25 | 18 |
alpha-beta T cell | 3.64e-25 | 18 |
immature T cell | 3.64e-25 | 18 |
mature T cell | 3.64e-25 | 18 |
immature alpha-beta T cell | 3.64e-25 | 18 |
leukocyte | 1.70e-23 | 136 |
hematopoietic oligopotent progenitor cell | 4.73e-23 | 161 |
hematopoietic multipotent progenitor cell | 4.73e-23 | 161 |
T cell | 5.40e-23 | 25 |
pro-T cell | 5.40e-23 | 25 |
nongranular leukocyte | 1.09e-21 | 115 |
hematopoietic lineage restricted progenitor cell | 5.67e-19 | 120 |
intermediate monocyte | 4.18e-11 | 9 |
CD14-positive, CD16-positive monocyte | 4.18e-11 | 9 |
B cell | 1.51e-10 | 14 |
non-classical monocyte | 8.20e-10 | 3 |
CD14-low, CD16-positive monocyte | 8.20e-10 | 3 |
natural killer cell | 2.64e-09 | 3 |
pro-NK cell | 2.64e-09 | 3 |
mesenchymal cell | 1.17e-07 | 354 |
connective tissue cell | 2.73e-07 | 361 |
Ontology term | p-value | n |
---|---|---|
thymus | 1.58e-07 | 4 |
hemolymphoid system gland | 1.58e-07 | 4 |
thymic region | 1.58e-07 | 4 |
pharyngeal gland | 1.58e-07 | 4 |
thymus primordium | 1.58e-07 | 4 |
connective tissue | 8.62e-07 | 371 |