FFCP PHASE1:Hg19::chr6:43044196..43044216,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5754 | |EntrezGene=5754 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9618 | |HGNC=9618 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=89bp_to_ENST00000487673_5end | |association_with_transcript=89bp_to_ENST00000487673_5end | ||
|cluster_id=chr6:43044196..43044216,+ | |||
|coexpression_cluster_id=C4604 | |||
|description=CAGE_peak_2_at_PTK7_5end | |description=CAGE_peak_2_at_PTK7_5end | ||
|id=chr6:43044196..43044216,+ | |id=chr6:43044196..43044216,+ | ||
|ontology_enrichment_celltype=CL:0000055!2.45e-23!180;CL:0000220!1.40e-17!246;CL:0002321!2.17e-17!248;CL:0000057!1.43e-13!75;CL:0000144!8.27e-12!625;CL:0000548!1.86e-11!679;CL:0000004!1.86e-11!679;CL:0000255!1.86e-11!679;CL:0002371!3.65e-11!591;CL:0000012!6.31e-11!682;CL:0000066!1.00e-08!254;CL:0000183!1.43e-08!59;CL:0002620!2.48e-08!23;CL:0000222!1.90e-07!119;CL:0000192!3.35e-07!42;CL:0000514!3.35e-07!42;CL:0000187!3.85e-07!54;CL:0002077!4.17e-07!33;CL:0000680!5.99e-07!57;CL:0000056!5.99e-07!57;CL:0000355!5.99e-07!57;CL:0002159!6.73e-07!13;CL:0000221!6.90e-07!71 | |ontology_enrichment_celltype=CL:0000055!2.45e-23!180;CL:0000220!1.40e-17!246;CL:0002321!2.17e-17!248;CL:0000057!1.43e-13!75;CL:0000144!8.27e-12!625;CL:0000548!1.86e-11!679;CL:0000004!1.86e-11!679;CL:0000255!1.86e-11!679;CL:0002371!3.65e-11!591;CL:0000012!6.31e-11!682;CL:0000066!1.00e-08!254;CL:0000183!1.43e-08!59;CL:0002620!2.48e-08!23;CL:0000222!1.90e-07!119;CL:0000192!3.35e-07!42;CL:0000514!3.35e-07!42;CL:0000187!3.85e-07!54;CL:0002077!4.17e-07!33;CL:0000680!5.99e-07!57;CL:0000056!5.99e-07!57;CL:0000355!5.99e-07!57;CL:0002159!6.73e-07!13;CL:0000221!6.90e-07!71 | ||
|ontology_enrichment_celltype_v019=CL:0002620;8.41e-09;23!CL:0002159;6.38e-08;14!CL:0000349;2.38e-07;19!CL:0002077;3.88e-07;34 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,4.61e-15,250;CL:0000057,3.09e-13,76;CL:0002620,5.05e-09,23;CL:0002159,7.67e-08,14;CL:0002077,1.23e-07,34;CL:0000192,3.57e-07,43;CL:0000514,3.57e-07,43;CL:0000349,5.13e-07,19;CL:0000221,6.77e-07,72;CL:0000187,8.75e-07,55 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!1.96e-19!365;UBERON:0003102!1.00e-13!95;UBERON:0002100!5.79e-13!216;UBERON:0002097!2.55e-12!40;UBERON:0002199!5.98e-12!45;UBERON:0002416!5.98e-12!45;UBERON:0005256!1.52e-11!143;UBERON:0000468!7.18e-10!659;UBERON:0000486!1.51e-09!82;UBERON:0000914!4.73e-09!83;UBERON:0002329!4.73e-09!83;UBERON:0003077!4.73e-09!83;UBERON:0003059!4.73e-09!83;UBERON:0007282!4.73e-09!83;UBERON:0009618!4.73e-09!83;UBERON:0007285!4.73e-09!83;UBERON:0003104!4.30e-08!238;UBERON:0009142!4.30e-08!238;UBERON:0000119!8.34e-08!312;UBERON:0000481!1.89e-07!347;UBERON:0000483!1.93e-07!309;UBERON:0004290!3.55e-07!70 | |ontology_enrichment_uberon=UBERON:0000475!1.96e-19!365;UBERON:0003102!1.00e-13!95;UBERON:0002100!5.79e-13!216;UBERON:0002097!2.55e-12!40;UBERON:0002199!5.98e-12!45;UBERON:0002416!5.98e-12!45;UBERON:0005256!1.52e-11!143;UBERON:0000468!7.18e-10!659;UBERON:0000486!1.51e-09!82;UBERON:0000914!4.73e-09!83;UBERON:0002329!4.73e-09!83;UBERON:0003077!4.73e-09!83;UBERON:0003059!4.73e-09!83;UBERON:0007282!4.73e-09!83;UBERON:0009618!4.73e-09!83;UBERON:0007285!4.73e-09!83;UBERON:0003104!4.30e-08!238;UBERON:0009142!4.30e-08!238;UBERON:0000119!8.34e-08!312;UBERON:0000481!1.89e-07!347;UBERON:0000483!1.93e-07!309;UBERON:0004290!3.55e-07!70 | ||
|ontology_enrichment_uberon_v019=UBERON:0002097;2.05e-10;41!UBERON:0002199;3.25e-09;46!UBERON:0002416;3.25e-09;46!UBERON:0003102;1.07e-08;50!UBERON:0010371;1.96e-07;31 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003102,2.10e-14,99;UBERON:0002097,6.90e-14,41;UBERON:0002199,2.92e-13,46;UBERON:0002416,2.92e-13,46;UBERON:0002100,3.03e-10,199;UBERON:0000486,2.69e-09,83;UBERON:0003104,1.25e-08,160;UBERON:0009142,1.25e-08,160;UBERON:0007503,1.49e-08,78;UBERON:0005256,1.80e-07,122;UBERON:0004923,4.02e-07,66;UBERON:0002329,5.54e-07,71;UBERON:0003059,5.54e-07,71;UBERON:0007282,5.54e-07,71;UBERON:0004290,5.54e-07,71;UBERON:0009618,5.54e-07,71 | |||
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|phase1_expression=4.36028110249336,3.21150785836475,6.48390258841467,2.00146596706261,4.91657203870017,3.48935409640147,0,5.05375898741465,1.56711376919903,3.68600904752263,9.76921635161399,12.0142754671595,8.96807725976742,2.10402800032079,2.98257638155124,5.3786011716142,1.20538905604795,5.11217063271161,3.90346239032406,3.20114750999649,2.85600967741954,4.70182082217132,0,0.410623275218653,0.753255837568817,0.305653622991805,0.0821005894499457,0.0787107813136792,0,0,0,2.75826367343678,3.0120591877825,4.06729411183466,0,0,0.293600439334847,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.790152254325231,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164437904603676,0,0,0,0,0,0,0,0,0.253019692019503,0,0,0,0,0,1.24930726552346,0,0,0,0,0,2.43806866313962,2.68280343881454,2.55725123687061,0.722878304769133,2.50668955317945,1.73815822752988,1.5905718941022,2.91980922181582,1.70162670895322,1.33037638477538,2.63504357079378,1.17881167947941,6.55731518926576,3.70784442784429,0,0,0,3.33886874027479,3.43196946468077,5.94332002127304,0,0.860234595106124,0.347140501607594,0.56530794192401,0.419499436209906,0.550236083880135,0,0.775250277507987,0,0.66944122552934,4.83395180530976,1.52054421143703,2.4406205754817,1.83831540172934,3.24056779152704,1.07159673940896,0.44905874525234,0.337834441449967,0,0,0.732806975721629,0,0,5.23312862571041,4.96971951695318,2.27934920996244,3.70745706277013,9.46560848471085,1.41867352879343,1.12135520028461,3.20246987189115,4.68668341992604,0.933633106199299,1.0776853765575,1.14423332179421,8.32465852047123,6.33793516927999,2.57753575017176,4.05808099879417,0.570471821544449,1.49448680551801,1.40921398372518,1.45685649931318,1.40450806702248,1.42907919878425,1.10550885580591,2.78979609174567,1.18800285728205,6.42894016124248,3.64064544775211,5.74894513452991,0.841680569770331,1.25118519871964,2.21651292387346,2.63386572528503,3.37136575378922,5.70904623845068,1.13432183160021,13.9923915837312,9.1829677191984,5.93409323246773,11.4034616512073,4.84346887420663,13.6549486224183,9.30584281657949,18.7341728787806,8.86676746966907,11.8643873894734,8.37654077644924,3.71785930683267,22.0105947360301,6.14587799188606,5.59549954624609,6.3776081543888,4.09119180886252,5.44928731239107,0.853815942907168,0.662648841607426,1.16193942869518,1.0366105501537,1.26160425437814,0.72995471815166,12.5159625863853,12.8648187638577,8.28809528114883,5.57241513638375,3.60939740834793,0.591534000199219,0.337169380156203,0,0.441175890929576,0.653638332277218,0.71181185733329,0.404493924480493,0,0.769494313892781,3.69077727312324,2.80483547606892,3.2925920906512,5.88034845542168,0,0,0,1.7658523976586,1.10689594688802,1.54411029268673,5.37776398502265,7.86812272803337,3.01586917234893,1.38882667737794,4.88712457965487,0,0,1.39116485970092,4.57893907519705,2.7429625074604,2.31492756288305,1.52203321787679,0,0,0,0,0,4.68669169933885,4.19955320497149,3.96970272278682,1.70161193135412,2.61570544662566,7.66765358330422,0.985326475791887,3.78608266256872,0.207328115540772,0.144119953416961,0,1.0159663086747,2.67391897890794,1.17217447210047,1.71072446022705,1.13110241973656,1.50171528921959,0.857479297891735,2.24262168690721,3.05172048183296,1.68678057388185,7.62703122970889,14.3062578340753,0.845302752556,9.0418959638856,1.04007436911366,2.05765899409714,0,3.19706614819319,2.28764789853036,13.0229185293946,4.11620168390384,0.65147236858747,3.55391948742546,1.58390374586686,2.41151501647669,4.35766729300147,1.69954085009497,0,0,0,3.35474797688216,8.04033550838797,0,1.01346914667305,1.2328579353023,1.07436577943937,0,0,0,0,1.27047312111232,0,0,0.335032530668698,1.27587750330633,0,0,0,3.92612773501248,6.00204625271613,2.17012018959788,4.99130067673937,3.21172179834891,8.2005255817646,1.87426263988341,5.71797589482666,4.5481500811197,2.0694614258501,4.64957918974806,4.42486004500088,4.43106433787223,10.3774613455252,7.54915532383883,0,0,0,8.48757200049526,16.6435439510497,8.16453791990137,10.1724201205699,10.7423381301644,6.73584226639377,7.56020980608636,7.16390148693385,6.11244900345709,11.8734453155993,0.925258162815933,3.37367278094941,0.821271560138091,0,1.62694529843943,1.81289174387433,8.62177822304125,1.56537681191024,3.3296189967736,1.27463817604702,3.54035920390445,4.06079651616671,2.31046011313244,3.13739907670742,4.38417673959782,1.37217117560738,6.8240030442538,1.87103075804167,1.72732732881711,1.54227252690289,3.25135725052623,3.01013864312912,4.33289664176565,4.15538004464362,2.23874754722178,0,0,1.53870075069834,4.92021968549559,0.976135183992909,0.309123034943167,2.7470839445503,1.98022799809411,6.89118645595407,5.85054221432869,4.82051789532479,3.48014585851639,1.07834031980251,0.460511024178389,0.689182862422653,1.39646318328756,1.59518363305651,0.681813019328807,4.00644160410318,4.29740779938543,3.84380134730212,6.89108647470754,4.2486267959331,0.929691098594572,14.4813679542094,0,4.31247012246524,3.72614221221915,3.47973196830029,2.40921484835096,0.7156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| ||
|short_description=p2@PTK7 | |short_description=p2@PTK7 | ||
}} | }} |
Latest revision as of 21:26, 18 September 2015
Short description: | p2@PTK7 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_PTK7_5end |
Coexpression cluster: | C4604_Placental_Amniotic_osteosarcoma_Fibroblast_Mesenchymal_Pericytes_Osteoblast |
Association with transcript: | 89bp_to_ENST00000487673_5end |
EntrezGene: | PTK7 |
HGNC: | 9618 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 4.61e-15 | 250 |
fibroblast | 3.09e-13 | 76 |
skin fibroblast | 5.05e-09 | 23 |
general ecto-epithelial cell | 7.67e-08 | 14 |
ecto-epithelial cell | 1.23e-07 | 34 |
smooth muscle cell | 3.57e-07 | 43 |
smooth muscle myoblast | 3.57e-07 | 43 |
extraembryonic cell | 5.13e-07 | 19 |
ectodermal cell | 6.77e-07 | 72 |
muscle cell | 8.75e-07 | 55 |
Ontology term | p-value | n |
---|---|---|
surface structure | 2.10e-14 | 99 |
skin of body | 6.90e-14 | 41 |
integument | 2.92e-13 | 46 |
integumental system | 2.92e-13 | 46 |
trunk | 3.03e-10 | 199 |
multilaminar epithelium | 2.69e-09 | 83 |
mesenchyme | 1.25e-08 | 160 |
entire embryonic mesenchyme | 1.25e-08 | 160 |
epithelial vesicle | 1.49e-08 | 78 |
trunk mesenchyme | 1.80e-07 | 122 |
organ component layer | 4.02e-07 | 66 |
somite | 5.54e-07 | 71 |
presomitic mesoderm | 5.54e-07 | 71 |
presumptive segmental plate | 5.54e-07 | 71 |
dermomyotome | 5.54e-07 | 71 |
trunk paraxial mesoderm | 5.54e-07 | 71 |