FFCP PHASE1:Hg19::chr12:52585791..52585806,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=144501 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=27056 | |||
|TSSclassifier=strong | |||
|UniProt=Q6KB66 | |||
|association_with_transcript=-7bp_to_ENST00000313234,ENST00000394815,NM_001081492,NM_182507,uc001rzx.2,uc001rzy.2_5end | |||
|cluster_id=chr12:52585791..52585806,- | |||
|description=CAGE_peak_1_at_KRT80_5end | |||
|id=chr12:52585791..52585806,- | |||
|ontology_enrichment_celltype=CL:0000066!7.95e-53!254;CL:0000076!5.98e-16!62;CL:0000223!3.30e-14!59;CL:0002076!1.75e-13!43;CL:0000077!6.11e-10!19;CL:0000220!3.92e-09!246;CL:0002321!5.76e-09!248 | |||
|ontology_enrichment_celltype_v019=CL:0000077;7.45e-12;19!CL:0002076;5.39e-10;42!CL:1000507;1.54e-08;10!CL:1000494;1.54e-08;10!CL:0000076;3.31e-08;63!CL:1000497;4.87e-08;17!CL:0002518;4.87e-08;17!CL:0002368;1.15e-07;13!CL:1000449;5.67e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,2.03e-56,253;CL:0000076,4.15e-17,63;CL:0000223,5.92e-15,58;CL:0002076,1.91e-14,42;CL:0000077,7.73e-12,19;CL:1000507,1.61e-08,10;CL:1000494,1.61e-08,10;CL:1000497,3.81e-08,17;CL:0002518,3.81e-08,17;CL:0002368,1.41e-07,13;CL:0002321,2.57e-07,250;CL:1000449,5.07e-07,15 | |||
|ontology_enrichment_development_v019=UBERON:0008947;1.13e-09;29!UBERON:0006595;4.98e-08;86!CL:0000223;6.16e-08;58 | |||
|ontology_enrichment_disease=DOID:305!3.36e-31!106;DOID:0050687!5.62e-25!143;DOID:162!3.87e-17!235;DOID:14566!4.97e-16!239;DOID:299!2.44e-10!25;DOID:1749!2.44e-09!14;DOID:7!1.10e-07!39 | |||
|ontology_enrichment_disease_v019=DOID:299;8.85e-14;25!DOID:1749;1.03e-11;14!DOID:305;1.44e-09;106 | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.20e-37,106;DOID:0050687,6.55e-28,143;DOID:162,7.70e-22,235;DOID:14566,1.33e-20,239;DOID:299,9.08e-14,25;DOID:1749,9.87e-12,14;DOID:7,6.29e-07,39 | |||
|ontology_enrichment_uberon=UBERON:0004119!2.11e-20!169;UBERON:0000925!2.11e-20!169;UBERON:0006595!2.11e-20!169;UBERON:0001007!1.11e-17!155;UBERON:0001555!1.11e-17!155;UBERON:0007026!1.11e-17!155;UBERON:0001041!2.00e-17!98;UBERON:0000077!3.70e-17!130;UBERON:0004921!6.62e-17!129;UBERON:0004185!6.62e-17!129;UBERON:0000466!5.86e-16!126;UBERON:0001004!7.66e-16!72;UBERON:0000464!1.88e-13!104;UBERON:0005177!2.78e-13!107;UBERON:0001048!8.15e-13!168;UBERON:0005911!1.38e-12!82;UBERON:0000065!2.10e-12!53;UBERON:0003104!3.07e-11!238;UBERON:0009142!3.07e-11!238;UBERON:0000072!6.15e-11!46;UBERON:0008947!1.12e-10!38;UBERON:0003258!1.12e-10!38;UBERON:0009569!3.30e-10!113;UBERON:0000062!9.84e-09!511;UBERON:0000481!1.00e-08!347;UBERON:0000058!1.18e-08!26;UBERON:0002553!1.52e-08!70;UBERON:0001008!2.72e-08!45;UBERON:0000475!2.74e-08!365;UBERON:0006554!5.70e-08!44;UBERON:0000161!1.14e-07!35;UBERON:0003064!1.83e-07!37;UBERON:0002100!3.62e-07!216;UBERON:0005153!3.71e-07!37;UBERON:0000063!5.62e-07!97 | |||
|ontology_enrichment_uberon_v019=UBERON:0000072;2.41e-09;37!UBERON:0006554;4.56e-09;30!UBERON:0001008;4.56e-09;30!UBERON:0001004;8.14e-09;65!UBERON:0000065;9.29e-09;44!UBERON:0004211;1.54e-08;10!UBERON:0009773;1.54e-08;10!UBERON:0001231;1.54e-08;10!UBERON:0004810;1.54e-08;10!UBERON:0000020;2.86e-07;23!UBERON:0004807;4.93e-07;22!UBERON:0006555;5.67e-07;15!UBERON:0004819;5.67e-07;15!UBERON:0001285;5.67e-07;15!UBERON:0007684;5.67e-07;15!UBERON:0001737;6.40e-07;9!UBERON:0001557;6.40e-07;9!UBERON:0005911;7.48e-07;36!UBERON:0007625;8.41e-07;11!UBERON:0001032;9.31e-07;24!UBERON:0004456;9.31e-07;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,2.38e-16,160;UBERON:0000925,2.38e-16,160;UBERON:0006595,2.38e-16,160;UBERON:0001004,4.00e-16,74;UBERON:0005177,5.92e-16,101;UBERON:0001041,4.51e-15,87;UBERON:0001007,3.99e-14,145;UBERON:0001555,3.99e-14,145;UBERON:0007026,3.99e-14,145;UBERON:0004921,9.10e-14,118;UBERON:0000065,1.47e-12,54;UBERON:0000072,7.95e-12,47;UBERON:0008947,1.16e-11,38;UBERON:0003258,1.16e-11,38;UBERON:0005911,1.16e-09,82;UBERON:0009569,1.72e-09,112;UBERON:0001008,3.75e-09,48;UBERON:0006554,9.34e-09,47;UBERON:0004810,1.61e-08,10;UBERON:0001048,1.76e-08,160;UBERON:0000161,1.08e-07,36;UBERON:0006555,1.98e-07,16;UBERON:0004819,1.98e-07,16;UBERON:0002113,3.41e-07,26;UBERON:0003918,3.41e-07,26;UBERON:0011143,3.41e-07,26;UBERON:0005095,3.41e-07,26;UBERON:0007687,3.41e-07,26;UBERON:0002100,4.09e-07,199;UBERON:0001444,4.60e-07,49;UBERON:0000153,4.96e-07,62;UBERON:0007811,4.96e-07,62;UBERON:0004211,5.07e-07,15;UBERON:0009773,5.07e-07,15;UBERON:0001231,5.07e-07,15;UBERON:0001285,5.07e-07,15;UBERON:0007684,5.07e-07,15;UBERON:0004208,5.07e-07,15;UBERON:0001737,6.26e-07,9;UBERON:0000033,6.91e-07,56;UBERON:0005172,7.22e-07,54;UBERON:0005173,7.22e-07,54;UBERON:0007625,7.42e-07,11;UBERON:0000020,8.80e-07,24;UBERON:0001032,8.80e-07,24;UBERON:0004456,8.80e-07,24;UBERON:0000489,9.02e-07,31 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0.261185628199839,110.82600536218,244.23040879035,0.655324116390517,0,0.123766352960047,0,0,0,0,0,0.492484232307152,0.408001382488506,1.56727360739044,1.71741592278634,5.74872585306114,0.87879847716362,0,0,0,0,0,0.154816123316076,3.67768489791571,1.50602959389125,8.13458822366933,0,0,0,0,0,0,0,0,0,0.145398238779565,0,0.242584061187816,0,0.411167888021826,0.619412741790207,0,0.256160706529101,0,0,0,0,0.564727018627814,0,0.674170453335254,0.612167784741805,0,0,0,0,0,0,0,0,0.502497330513487,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.50133791063589,0,0,0,3.78139268656271,5.09977614163897,6.67544371267758,0.327447688744282,6.19301990097322,15.2021621541616,0,0,0,0,0,0,0.79504962946682,1.72046919021225,1.38856200643038,0,0,1.92582629358047,1.04497483268405,0,0.71153252537342,0,0,0,0,0,0.81014194788176,1.07159673940896,0.22452937262617,0.450445921933289,3.06633274931766,3.79706263827252,3.48083313467774,0,0,0.436094052142534,0,0.379891534993739,0,0.286836620748814,0,3.36406560085384,0,23.6800846480474,0,0,0,0.454072282934794,0.576175924479999,0.234321431833797,0,0.570471821544449,0,0,0.323745888736263,0,0,0.368502951935304,0,0,0,0,0,0.336672227908132,0,0,0,0,0,0.226864366320042,0.358779271377724,0.427114777637135,0,0,0,0,0.37223371266318,0,0.0974370051611986,0.252433774244115,0.0920498986422993,0,0,0.10075209822764,0,8.50347753918506,8.72787585890671,0.573609190778008,0.121973706129595,0,0,0.10366105501537,0.504641701751257,0,0,0,1.38134921352481,0,0,15.0249636050602,15.1726221070292,11.0865073746402,19.0808572827042,15.2515610864684,10.6771778599993,9.97751680385217,12.5581737680221,7.69494313892781,0,2.80483547606892,0.8231480226628,1.47008711385542,1.26755034821831,0,0,0,10.4540172761647,1.88724591328378,9.4385245451418,25.8524032492525,1.70899253099772,0.0925884451585296,0.325808305310325,0,4.3299402607582,1.15930404975077,1.52631302506568,0.144366447761074,0,0,177.005785142878,157.961453825457,0,0,0,3.74935335947108,0.335964256397719,1.27597587518148,0.716468181622786,0,3.4504441124869,0,0,1.24396869324463,0.432359860250884,0.25248486685276,0.063497894292169,0,0,3.4214489204541,0,0,0,0,0,0.2933531432838,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,3.01439377059586,3.48613383440118,10.8970560388442,0,0,0,1.19812427745791,0,0,0.868687840005475,1.43833425785268,0.895304816199478,0.112085143993527,0,0,0,0,0,0,0.335032530668698,0,0,0,0,0,0.500170521059677,0,0,0.356857977594324,0.473107245101804,0.234282829985426,0,0,0,0,0.184369168541703,0,0.195801157462741,3.43143423810856,0.206768026122887,0,0,0.909382714338778,0,0.30239029332968,0.248107807818777,0,0,0.128139149255701,0.511707249066704,0.482561763430822,0,0,0,0,0,0,0.483437798366489,3.00759705454927,87.2006965222938,0.459257792658427,0,0.131124414959424,22.1087810324632,7.3164570249194,66.6697303800327,18.9980992049239,21.7436355519324,0,0.510281115829547,1.94324324491925,0,22.2176078785959,19.0642114064844,25.2327510314588,12.4661401339309,28.879843359161,0,0,12.3096060055867,58.0585922888479,65.7264357221892,9.273691048295,7.14241825583079,8.82851649150292,2.29706215198469,11.0510241826209,0,1.06337790121334,0.462145851343933,0.460511024178389,1.24052915236078,0.214840489736547,0.435050081742686,1.53407929348982,1.33548053470106,2.14870389969272,1.15314040419064,2.80747967488085,11.228513674966,0,0,0,0,0,0,0,0,0,1.2655176988749,0.190630193923825,0,0,0,0,0,0,0,0.202182481573316,0,0.421258456238981,0,0,0,0,0,0,0.551365343546124,0,0.438450885253763,0,0,0,0.30982349809975,0.281695602532241,0.143411352204052,0,0,0,0.211107635297664,0,1.13841952129715,0,5.09977197445214,10.0545341330368,1.08890984861323,9.41438007767792,2.58303223602738,5.05414427002877,16.406915680857,2.06751060186264,0,0,0,0,0,0,0,0,0,0,4.90080431962063,0,0.432807638929335,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.50565556505718,0,0,0,0,4.11709188898084,0.146508179271894,0,34.1016755889084,26.14052550619,16.7121139316383,5.93929361665277,3.07160702099232,0,0,4.22973079087042,1.48323486804084,8.86726714137573,0.796991953004279,0,0.503865495708552,73.9402574490579,0,0,97.1476875902603,167.026755972343,0,2.07151151837561,0,0,0,0,0,42.9705805790635,13.7312199994027,4.34999745260876,6.03105275913148,31.0189453357175,42.7861703999965,0.344743373241465,0,0,0,0,0,0,0,0.219385397153973,68.8491089440018,281.078268465664,7.69502585037971,8.31777007683109,3.4584585658209,9.42455266302607,0.434589487688032,0.957003479195758,2.47313502185028,0,0,0,0,0,0,0,0,0,15.824854839602,57.9476468964974,0,0,0,0.619202951523374,0.611030144933625,0,0,0,0,1.60515529459758,0,0,82.3748045704098,7.76897214509097,1.18375320854817,1.20990716048664,0.30607276163049,0,0.150323419414493,0,25.256847162873,7.61281498513647,21.9753042885058,20.310313061403,5.12297182853627,0.693373365065693,1.21491816834592,65.7528986650474,24.0283410161911,4.19344003780872,2.0638323896594,36.6706495585633,40.8569282511777,37.6088793303698,27.6418696991995,0,1.58186518546373,8.0854735541583,3.97429223405979,0,63.3586480060762,7.53492910364417,2.34798294213288,40.7611603547546,8.93360586355457,0,0,30.1074527795233,1.11827282008889,69.7654342465714,67.5443904185862,85.7743339761132,2.75395187618069,0,0,0,0,24.9263956023575,0,0,0.229160424011684,0,0.399358000997982,0,0,0.604651252380536,0.360299883542404,1.16495949527454,0.236349546921671,0.247247575143499,0.202210631562555,18.3075115617433,0.0846733320657845,0,0,0,0,0,3.37460837327251,28.6306723186441,0,22.4741240691508,2.99461687736953,1.57363764404994,0.528001682597033,3.40645944732405,29.746855584514,0,0,1.017074150619,0,0,0,14.3676229874985,0,0.170388021785422,0.679872549120754,0.146552233678082,1.32506888912221,0,0,29.9401966297576,19.7348206248668,1.9221734262185,0.628817220398664,0.414239055347196,0,0,0,31.9170628885091,0,0,0,0,23.2440062450347,0,0,0,0,0,0,0.138348634936231,12.1230995723243,0,0.285465333544967,2.82318983637806,0,0.579684114443301,0,0.233713309847224,0,0.378806010550178,0,0,0,0,0,0.147855149989634,1.27437413730962,0,0.776314784381297,0,0.265841714557995,0.521745061811734,0,0.761610424337591,0,0.363697318405119,3.54454838240212,0,0,20.801443762484,0,0,0,42.1837428591994,31.3084723407392,48.0229497215989,29.4717703165954,22.4576800094119,19.8236730650239,77.545468188284,88.626015335199,55.4788645434129,0.530067437837643,31.8308163147009,76.699868056495,16.6556987082165,31.7795914392703,6.98877899207979,0,0.584580926518165,0.132864840313363,0.490696182767533,4.91414773269619,11.7970996201785,48.6017883724842,0,0.106691729694141,0,19.8630583748393,0,143.096736396992,11.1973906805935,0,0,0,0,0,0,0,0,0,0,0,0,0.3062454773532,0.0642292250964595,0,0,0,0,0,0,0,124.942045651806,28.6666427735009,5.68628655417205,36.5061105035069,0.381382095467167,4.8325194824207,0,0.752103283492572,3.22728109925632,10.1596821460302,0,31.4442081619386,119.467717663373,0,0,0,0,0,23.5750839748588,2.48105589194647,0,46.1222363778939,0.535701835878287,0,0,0,20.0467356567564,0,40.985634255543,0,0,42.9043642408805,16.017321872458,2.19780659981439,0,6.72653191953094,0,74.710946561643,1.9110067515482,0.0714765441766563,0,0,0,0,1.24329698497822,5.8044282211943,43.5493586942878,31.8368245527005,0,0.0852134047591577,1.27016115057279,104.930945793175,10.2368107269226,6.68877257284203,23.154074382143,160.279331493692,3.53561982448581,0,0.718639647993729,0,37.8854574586129,0,0,0,0.79062257427272,0,4.67984815056688,0.540219106755613,0,4.70317296361523,0,0.235676547101626,0,0,0.4226557275834,0.169927114687817,0,0,0,48.3881173621332,25.0555358918141,50.9532678476218,0,24.7713813038452,0,0,0,0,1.5870805215462,0,0,0,0,0,0,1.1218771271618,0.534434810531121,0.0918948995348449,0,0.378893491091197,0.267964130156178,0,0,42.2203284163942,2.14257988317366,0.839655827868079,1.24149428591716,14.801405860641,0.445530107947154,0,52.0343027473738,52.361695066048,57.4513012214432,9.68249772801131,8.64916927019635,35.247615308552,29.3500201163718,0,9.43164622119162,4.69281884806909,0.977931553462932,3.66206560484165,6.65756774185513,0.603821380773079,0 | |||
|short_description=p1@KRT80 | |||
}} |
Latest revision as of 21:50, 18 September 2015
Short description: | p1@KRT80 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_KRT80_5end |
Coexpression cluster: | NA |
Association with transcript: | -7bp_to_ENST00000313234, ENST00000394815, NM_001081492, NM_182507, uc001rzx.2, uc001rzy.2_5end |
EntrezGene: | KRT80 |
HGNC: | 27056 |
UniProt: | Q6KB66 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 2.03e-56 | 253 |
squamous epithelial cell | 4.15e-17 | 63 |
endodermal cell | 5.92e-15 | 58 |
endo-epithelial cell | 1.91e-14 | 42 |
mesothelial cell | 7.73e-12 | 19 |
kidney tubule cell | 1.61e-08 | 10 |
nephron tubule epithelial cell | 1.61e-08 | 10 |
kidney cell | 3.81e-08 | 17 |
kidney epithelial cell | 3.81e-08 | 17 |
respiratory epithelial cell | 1.41e-07 | 13 |
embryonic cell | 2.57e-07 | 250 |
epithelial cell of nephron | 5.07e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.20e-37 | 106 |
cell type cancer | 6.55e-28 | 143 |
cancer | 7.70e-22 | 235 |
disease of cellular proliferation | 1.33e-20 | 239 |
adenocarcinoma | 9.08e-14 | 25 |
squamous cell carcinoma | 9.87e-12 | 14 |
disease of anatomical entity | 6.29e-07 | 39 |