FFCP PHASE1:Hg19::chr15:72494936..72494965,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr15:72494936..72494965,-
|short_description=p7@PKM2
|description=CAGE_peak_7_at_PKM2_5end
|association_with_transcript=39bp_to_uc002atr.1_5end
|EntrezGene=53...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5315 | |EntrezGene=5315 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=9021 | |HGNC=9021 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=39bp_to_uc002atr.1_5end | |||
|cluster_id=chr15:72494936..72494965,- | |||
|description=CAGE_peak_7_at_PKM2_5end | |||
|id=chr15:72494936..72494965,- | |||
|ontology_enrichment_celltype=CL:0000548!4.43e-30!679;CL:0000004!4.43e-30!679;CL:0000255!4.43e-30!679;CL:0000012!1.10e-28!682;CL:0000144!3.58e-23!625;CL:0002371!3.35e-20!591;CL:0000003!1.47e-19!722;CL:0000055!5.19e-19!180;CL:0000220!3.61e-14!246;CL:0002321!4.28e-14!248;CL:0000063!2.01e-11!578;CL:0000222!5.41e-10!119;CL:0000680!1.63e-09!57;CL:0000056!1.63e-09!57;CL:0000355!1.63e-09!57;CL:0000183!3.22e-09!59;CL:0000393!8.76e-09!60;CL:0000211!8.76e-09!60;CL:0000187!1.80e-08!54;CL:0000192!3.25e-08!42;CL:0000514!3.25e-08!42;CL:0000057!5.01e-08!75;CL:0000723!1.45e-07!436;CL:0000048!3.15e-07!430;CL:0000034!3.69e-07!444;CL:0000359!4.72e-07!32;CL:0000066!5.57e-07!254 | |||
|ontology_enrichment_celltype_v019=CL:0000359;6.31e-08;32!CL:0000192;9.04e-07;43 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,9.60e-13,250;CL:0000680,6.94e-10,58;CL:0000056,6.94e-10,58;CL:0000355,6.94e-10,58;CL:0000393,3.33e-09,61;CL:0000211,3.33e-09,61;CL:0000222,4.31e-09,121;CL:0000192,7.91e-09,43;CL:0000514,7.91e-09,43;CL:0000187,1.01e-08,55;CL:0000359,6.56e-08,32;CL:0000723,8.47e-08,433;CL:0000057,1.13e-07,76;CL:0000034,1.18e-07,441;CL:0000048,2.25e-07,427 | |||
|ontology_enrichment_development_v019=CL:0000514;9.04e-07;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000486!1.06e-09!82;UBERON:0000914!1.45e-08!83;UBERON:0002329!1.45e-08!83;UBERON:0003077!1.45e-08!83;UBERON:0003059!1.45e-08!83;UBERON:0007282!1.45e-08!83;UBERON:0009618!1.45e-08!83;UBERON:0007285!1.45e-08!83;UBERON:0004290!2.84e-08!70;UBERON:0001637!7.23e-08!42;UBERON:0003509!7.23e-08!42;UBERON:0004572!7.23e-08!42;UBERON:0001134!3.26e-07!61;UBERON:0002036!3.26e-07!61;UBERON:0003082!3.26e-07!61;UBERON:0005256!3.36e-07!143;UBERON:0002385!9.56e-07!63;UBERON:0001015!9.56e-07!63;UBERON:0000383!9.56e-07!63 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007503,1.16e-10,78;UBERON:0000486,2.48e-10,83;UBERON:0007524,2.55e-09,73;UBERON:0002329,2.81e-09,71;UBERON:0003059,2.81e-09,71;UBERON:0007282,2.81e-09,71;UBERON:0004290,2.81e-09,71;UBERON:0009618,2.81e-09,71;UBERON:0003077,6.67e-09,72;UBERON:0007285,6.67e-09,72;UBERON:0001134,3.24e-08,62;UBERON:0002036,3.24e-08,62;UBERON:0003082,3.24e-08,62;UBERON:0001637,4.71e-08,42;UBERON:0003509,4.71e-08,42;UBERON:0004572,4.71e-08,42;UBERON:0002385,1.73e-07,64;UBERON:0001015,1.73e-07,64;UBERON:0000383,1.73e-07,64 | |||
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| ||
|short_description=p7@PKM2 | |||
}} | }} |
Latest revision as of 22:23, 18 September 2015
Short description: | p7@PKM2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_PKM2_5end |
Coexpression cluster: | NA |
Association with transcript: | 39bp_to_uc002atr.1_5end |
EntrezGene: | PKM2 |
HGNC: | 9021 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 9.60e-13 | 250 |
muscle precursor cell | 6.94e-10 | 58 |
myoblast | 6.94e-10 | 58 |
multi-potent skeletal muscle stem cell | 6.94e-10 | 58 |
electrically responsive cell | 3.33e-09 | 61 |
electrically active cell | 3.33e-09 | 61 |
mesodermal cell | 4.31e-09 | 121 |
smooth muscle cell | 7.91e-09 | 43 |
smooth muscle myoblast | 7.91e-09 | 43 |
muscle cell | 1.01e-08 | 55 |
vascular associated smooth muscle cell | 6.56e-08 | 32 |
somatic stem cell | 8.47e-08 | 433 |
fibroblast | 1.13e-07 | 76 |
stem cell | 1.18e-07 | 441 |
multi fate stem cell | 2.25e-07 | 427 |
Ontology term | p-value | n |
---|---|---|
epithelial vesicle | 1.16e-10 | 78 |
multilaminar epithelium | 2.48e-10 | 83 |
dense mesenchyme tissue | 2.55e-09 | 73 |
somite | 2.81e-09 | 71 |
presomitic mesoderm | 2.81e-09 | 71 |
presumptive segmental plate | 2.81e-09 | 71 |
dermomyotome | 2.81e-09 | 71 |
trunk paraxial mesoderm | 2.81e-09 | 71 |
paraxial mesoderm | 6.67e-09 | 72 |
presumptive paraxial mesoderm | 6.67e-09 | 72 |
skeletal muscle tissue | 3.24e-08 | 62 |
striated muscle tissue | 3.24e-08 | 62 |
myotome | 3.24e-08 | 62 |
artery | 4.71e-08 | 42 |
arterial blood vessel | 4.71e-08 | 42 |
arterial system | 4.71e-08 | 42 |
muscle tissue | 1.73e-07 | 64 |
musculature | 1.73e-07 | 64 |
musculature of body | 1.73e-07 | 64 |