FFCP PHASE1:Hg19::chr15:72511316..72511380,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5315 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=9021 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=59bp_to_DQ892739,EU176742,EU832358,EU832443_5end | |||
|cluster_id=chr15:72511316..72511380,- | |||
|coexpression_cluster_id=C1409 | |||
|description=CAGE_peak_4_at_PKM2_5end | |||
|id=chr15:72511316..72511380,- | |||
|ontology_enrichment_celltype=CL:0000548!1.51e-28!679;CL:0000004!1.51e-28!679;CL:0000255!1.51e-28!679;CL:0000012!3.65e-27!682;CL:0000144!8.62e-22!625;CL:0002371!1.31e-19!591;CL:0000003!1.20e-18!722;CL:0000055!1.82e-17!180;CL:0000220!4.03e-16!246;CL:0002321!6.61e-16!248;CL:0000063!3.82e-13!578;CL:0000222!4.82e-11!119;CL:0000192!3.07e-09!42;CL:0000514!3.07e-09!42;CL:0000680!4.29e-09!57;CL:0000056!4.29e-09!57;CL:0000355!4.29e-09!57;CL:0000183!1.30e-08!59;CL:0000359!2.62e-08!32;CL:0000066!3.44e-08!254;CL:0000057!5.33e-08!75;CL:0000187!5.49e-08!54;CL:0000393!2.08e-07!60;CL:0000211!2.08e-07!60;CL:0000723!3.35e-07!436;CL:0000048!7.97e-07!430 | |||
|ontology_enrichment_celltype_v019=CL:0000359;2.31e-08;32 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,9.12e-16,250;CL:0000222,6.87e-11,121;CL:0000680,7.54e-09,58;CL:0000056,7.54e-09,58;CL:0000355,7.54e-09,58;CL:0000192,8.79e-09,43;CL:0000514,8.79e-09,43;CL:0000359,1.73e-08,32;CL:0000057,7.11e-08,76;CL:0000187,9.67e-08,55;CL:0000723,1.53e-07,433;CL:0000066,2.30e-07,253;CL:0000393,2.60e-07,61;CL:0000211,2.60e-07,61;CL:0000048,3.17e-07,427;CL:0000034,4.82e-07,441 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000486!2.60e-10!82;UBERON:0000914!3.81e-10!83;UBERON:0002329!3.81e-10!83;UBERON:0003077!3.81e-10!83;UBERON:0003059!3.81e-10!83;UBERON:0007282!3.81e-10!83;UBERON:0009618!3.81e-10!83;UBERON:0007285!3.81e-10!83;UBERON:0004290!1.45e-09!70;UBERON:0001637!3.84e-09!42;UBERON:0003509!3.84e-09!42;UBERON:0004572!3.84e-09!42;UBERON:0001134!1.86e-08!61;UBERON:0002036!1.86e-08!61;UBERON:0003082!1.86e-08!61;UBERON:0004573!5.58e-08!33;UBERON:0004571!5.58e-08!33;UBERON:0002385!1.11e-07!63;UBERON:0001015!1.11e-07!63;UBERON:0000383!1.11e-07!63;UBERON:0005256!1.80e-07!143;UBERON:0002204!4.72e-07!167 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;3.61e-07;33!UBERON:0004571;3.61e-07;33 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007503,3.88e-11,78;UBERON:0000486,1.20e-09,83;UBERON:0001637,2.73e-09,42;UBERON:0003509,2.73e-09,42;UBERON:0004572,2.73e-09,42;UBERON:0002329,2.99e-09,71;UBERON:0003059,2.99e-09,71;UBERON:0007282,2.99e-09,71;UBERON:0004290,2.99e-09,71;UBERON:0009618,2.99e-09,71;UBERON:0007524,6.43e-09,73;UBERON:0003077,9.05e-09,72;UBERON:0007285,9.05e-09,72;UBERON:0001134,4.06e-08,62;UBERON:0002036,4.06e-08,62;UBERON:0003082,4.06e-08,62;UBERON:0004573,6.26e-08,33;UBERON:0004571,6.26e-08,33;UBERON:0002385,3.39e-07,64;UBERON:0001015,3.39e-07,64;UBERON:0000383,3.39e-07,64 | |||
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| |||
|short_description=p4@PKM2 | |||
}} |
Latest revision as of 22:31, 18 September 2015
Short description: | p4@PKM2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_PKM2_5end |
Coexpression cluster: | C1409_Smooth_Bronchial_Hair_Fibroblast_Alveolar_Mammary_leiomyoma |
Association with transcript: | 59bp_to_DQ892739, EU176742, EU832358, EU832443_5end |
EntrezGene: | PKM2 |
HGNC: | 9021 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 9.12e-16 | 250 |
mesodermal cell | 6.87e-11 | 121 |
muscle precursor cell | 7.54e-09 | 58 |
myoblast | 7.54e-09 | 58 |
multi-potent skeletal muscle stem cell | 7.54e-09 | 58 |
smooth muscle cell | 8.79e-09 | 43 |
smooth muscle myoblast | 8.79e-09 | 43 |
vascular associated smooth muscle cell | 1.73e-08 | 32 |
fibroblast | 7.11e-08 | 76 |
muscle cell | 9.67e-08 | 55 |
somatic stem cell | 1.53e-07 | 433 |
epithelial cell | 2.30e-07 | 253 |
electrically responsive cell | 2.60e-07 | 61 |
electrically active cell | 2.60e-07 | 61 |
multi fate stem cell | 3.17e-07 | 427 |
stem cell | 4.82e-07 | 441 |
Ontology term | p-value | n |
---|---|---|
epithelial vesicle | 3.88e-11 | 78 |
multilaminar epithelium | 1.20e-09 | 83 |
artery | 2.73e-09 | 42 |
arterial blood vessel | 2.73e-09 | 42 |
arterial system | 2.73e-09 | 42 |
somite | 2.99e-09 | 71 |
presomitic mesoderm | 2.99e-09 | 71 |
presumptive segmental plate | 2.99e-09 | 71 |
dermomyotome | 2.99e-09 | 71 |
trunk paraxial mesoderm | 2.99e-09 | 71 |
dense mesenchyme tissue | 6.43e-09 | 73 |
paraxial mesoderm | 9.05e-09 | 72 |
presumptive paraxial mesoderm | 9.05e-09 | 72 |
skeletal muscle tissue | 4.06e-08 | 62 |
striated muscle tissue | 4.06e-08 | 62 |
myotome | 4.06e-08 | 62 |
systemic artery | 6.26e-08 | 33 |
systemic arterial system | 6.26e-08 | 33 |
muscle tissue | 3.39e-07 | 64 |
musculature | 3.39e-07 | 64 |
musculature of body | 3.39e-07 | 64 |