FFCP PHASE1:Hg19::chr8:68864231..68864243,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=80243 | |EntrezGene=80243 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=22950 | |HGNC=22950 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-104bp_to_uc003xxt.2_5end | |association_with_transcript=-104bp_to_uc003xxt.2_5end | ||
|cluster_id=chr8:68864231..68864243,+ | |||
|description=CAGE_peak_8_at_PREX2_5end | |description=CAGE_peak_8_at_PREX2_5end | ||
|id=chr8:68864231..68864243,+ | |id=chr8:68864231..68864243,+ | ||
|ontology_enrichment_celltype=CL:0002139;3.47e-16;24!CL:0002618;1.08e-13;3!CL:0002138;9.27e-12;6!CL:0000115;1.20e-10;36!CL:0000047;9.92e-10;2!CL:0000071;3.68e-08;18!CL:0002543;4.75e-07;6 | |ontology_enrichment_celltype=CL:0002139!3.20e-15!24;CL:0000071!5.15e-11!18;CL:0002546!5.15e-11!18;CL:0000115!1.11e-09!35 | ||
| | |ontology_enrichment_celltype_v019=CL:0002139;3.47e-16;24!CL:0002618;1.08e-13;3!CL:0002138;9.27e-12;6!CL:0000115;1.20e-10;36!CL:0000047;9.92e-10;2!CL:0000071;3.68e-08;18!CL:0002543;4.75e-07;6 | ||
|ontology_enrichment_disease=DOID:4468;3.81e-10;2 | |ontology_enrichment_celltype_v019_2=CL:0002139,3.62e-16,24;CL:0002618,5.47e-14,3;CL:0000115,3.71e-12,36;CL:0005020,1.21e-11,6;CL:0002138,1.21e-11,6;CL:0005022,1.21e-11,6;CL:0002078,2.83e-09,45;CL:0000071,3.35e-08,18;CL:0002546,3.35e-08,18;CL:0000213,5.48e-08,58;CL:0000215,5.48e-08,58;CL:0002543,3.43e-07,6 | ||
|ontology_enrichment_uberon=UBERON:0002298;6.97e-11;6!UBERON:0002081;2.37e-09;2!UBERON:0001473;7.91e-09;8!UBERON:0004536;7.91e-09;8!UBERON:0006558;7.91e-09;8!UBERON:0002066;2.19e-08;5!UBERON:0004638;3.68e-08;18!UBERON:0001986;3.68e-08;18!UBERON:0004852;3.68e-08;18!UBERON:0004732;1.26e-07;13!UBERON:0000125;2.79e-07;9!UBERON:0002308;2.79e-07;9!UBERON:0002465;4.60e-07;10 | |ontology_enrichment_development_v019=CL:0005022;9.27e-12;6!CL:0002546;3.68e-08;18 | ||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:4468;3.81e-10;2 | |||
|ontology_enrichment_disease_v019_2=DOID:4468,3.83e-10,2 | |||
|ontology_enrichment_uberon=UBERON:0007023!2.49e-45!115;UBERON:0001017!7.94e-25!82;UBERON:0005743!6.23e-24!86;UBERON:0001049!9.61e-24!57;UBERON:0005068!9.61e-24!57;UBERON:0006241!9.61e-24!57;UBERON:0007135!9.61e-24!57;UBERON:0002780!2.19e-21!41;UBERON:0001890!2.19e-21!41;UBERON:0006240!2.19e-21!41;UBERON:0000073!2.54e-21!94;UBERON:0001016!2.54e-21!94;UBERON:0002616!3.25e-21!59;UBERON:0003080!1.26e-20!42;UBERON:0000955!3.24e-20!69;UBERON:0006238!3.24e-20!69;UBERON:0003075!1.82e-18!86;UBERON:0007284!1.82e-18!86;UBERON:0001893!5.35e-17!34;UBERON:0002346!5.70e-17!90;UBERON:0002020!6.36e-17!34;UBERON:0003528!6.36e-17!34;UBERON:0002791!3.43e-16!33;UBERON:0001869!3.60e-15!32;UBERON:0004111!1.01e-13!241;UBERON:0003056!1.07e-12!61;UBERON:0000025!1.22e-11!194;UBERON:0000477!3.94e-11!286;UBERON:0001986!5.15e-11!18;UBERON:0004638!5.15e-11!18;UBERON:0004852!5.15e-11!18;UBERON:0000956!5.56e-11!25;UBERON:0000203!5.56e-11!25;UBERON:0000153!8.89e-11!129;UBERON:0007811!8.89e-11!129;UBERON:0000033!1.18e-09!123;UBERON:0004121!1.59e-09!169;UBERON:0000924!6.09e-09!173;UBERON:0006601!6.09e-09!173;UBERON:0002619!1.07e-08!22;UBERON:0000487!3.10e-08!22;UBERON:0002308!8.99e-08!9;UBERON:0000125!8.99e-08!9;UBERON:0002298!1.71e-07!8;UBERON:0000483!2.90e-07!309;UBERON:0001950!4.84e-07!20;UBERON:0000119!5.35e-07!312;UBERON:0006914!9.09e-07!25 | |||
|ontology_enrichment_uberon_v019=UBERON:0002298;6.97e-11;6!UBERON:0002081;2.37e-09;2!UBERON:0001473;7.91e-09;8!UBERON:0004536;7.91e-09;8!UBERON:0006558;7.91e-09;8!UBERON:0002066;2.19e-08;5!UBERON:0004638;3.68e-08;18!UBERON:0001986;3.68e-08;18!UBERON:0004852;3.68e-08;18!UBERON:0004732;1.26e-07;13!UBERON:0000125;2.79e-07;9!UBERON:0002308;2.79e-07;9!UBERON:0002465;4.60e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002298,6.14e-11,6;UBERON:0002081,1.46e-09,2;UBERON:0010227,1.46e-09,2;UBERON:0001473,9.64e-09,8;UBERON:0004536,9.64e-09,8;UBERON:0006558,9.64e-09,8;UBERON:0002066,1.47e-08,5;UBERON:0004638,3.35e-08,18;UBERON:0001986,3.35e-08,18;UBERON:0004852,3.35e-08,18;UBERON:0000073,3.60e-08,53;UBERON:0002616,3.60e-08,53;UBERON:0004732,1.11e-07,13;UBERON:0004111,1.27e-07,240;UBERON:0001049,1.28e-07,56;UBERON:0005068,1.28e-07,56;UBERON:0006241,1.28e-07,56;UBERON:0007135,1.28e-07,56;UBERON:0007023,2.06e-07,114;UBERON:0000125,3.49e-07,9;UBERON:0002308,3.49e-07,9;UBERON:0002465,5.37e-07,10 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0.85870796139317,0.410623275218653,0.753255837568817,0.152826811495903,0.0821005894499457,0.157421562627358,0,0,0,0,0,0,0,0,0.587200878669695,0,0.200544447470142,0,0,0,0,0,0,0,0,0,0.309706370895104,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32171328579026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196468613246569,0,0,0,0,0,0,0,0,2.18638648103376,0,0.347140501607594,0,0.419499436209906,2.20094433552054,0.626984899610432,2.32575083252396,2.13459757612026,5.02080919147005,0.402829317109147,0,0.488124115096339,0.735326160691737,3.24056779152704,3.48268940307911,1.79623498100936,3.82879033643296,0,0.949265659568129,0.549605231791222,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132529768321485,0.348581828608555,0.829288440122964,0.504641701751257,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0.433099343283221,0,1.14152491340759,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207328115540772,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.977208552881205,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.28685161800217,2.60279707715243,0,0.837581326671744,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116210378459959,0,0,0,0.114814448164607,0,0,0,0.231046011313244,0,0,0,0,0.510281115829547,1.0795795805107,0,0,0.501689773854853,0,0,0,0,0,0,0,0,0.412164046590889,0,0,0,0,0,0,0,0.15350367472613,0,0,0,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.682499557039929,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.12972560932135,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.11598390910176,0,0.766021480529467,0.211673582723883,0,0,0,0,2.50634477090067,0.338583555603207,0,0,0,0,0,0,0,0,0,0,0,0.66614393599564,0,0,0.879049075631364,0.242721043499027,0,0,0,0,0,0,0.281338832821026,0,0,0,0.19924798825107,0.552567831062295,0,0,0,0,0,0,0,1.1837208676432,0,0,0.969332746095218,0.185536196323703,0,0,0,0,0,0,0,0.344743373241465,0,0,0,0.482385754501632,0,0.331737779793674,0,0.438770794307945,0,0,0.384751292518985,0,0,0,0,0,0.183195186803725,0,0,0,0,0,0,0,0,0,3.37596903244843,5.38668266925187,0,0.649165919226273,0,0.619202951523374,0,0,0,0,0.67401132980677,0.802577647298789,0.468528891450678,0,0,0,0,0,0.30607276163049,0.505492637027904,0.300646838828985,0.207376382794494,0,0,0,0,0,0,0.694238953340524,0,0,0.17472666824203,0,0,0,0,0.290967049465258,0,0,0,0,0.569797163602908,0.195551382734803,0,0,0,0,0,0,0,0,0,0,0,0.713987523454252,0,0.600420288709789,1.09524303113594,1.27746588066972,0,0,0.279282401272254,0.916641696046735,2.87149209830726,0.399358000997982,0,1.56220020209311,1.67958681216816,0,0,0,0,0,0,0,0.795229689809303,1.49823746722733,0.482259445395058,0.275078873194468,0.415440338029185,0,0,0.546746009922222,0,0.236417121897595,0.157363764404994,0,0,0,1.42939065274673,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0.258565912723101,1.3223260174269,0,0,1.28144895081234,0.943225830597996,0.414239055347196,0,0,0,0,0.544017803369474,1.7548292581589,0.306345576763462,0,0,0,0.366078794705889,1.001527445652,1.72022758707021,1.10929051536852,0.931446044120752,0.276697269872462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02496607435179,0,0,0.967809053062115,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.3687002508852,0.578063025868136,0,0.478901577171454,0.205116364240755,0,0.207471757392654,0.645902582527404,2.85538840518309,0,0,0,0,0,0,0,0.676892955143315,0,0,0,0,0,0.607838261565552,1.56215619722769,0,0.887821342714695,0,0,0.496211178389294,0,0,0,0.336283722218824,0.606965604236632,1.13831095675649,2.04015451374069,0,0,1.15548546060614,0.526182188502793,0,0,0.549451649953598,1.09980912941201,0,0,0.647782773655864,2.8665101273223,0.285906176706625,0,0,3.99874026295933,0,0,0,0,0,0,0,0.423387050190929,0,0.62041277132864,0,1.67783147696688,0,0,0.647428837187895,0.102662806856247,0,0,0.467878926924211,0,0,0.33883824611688,0,0,0.617393264863557,0.655678681511872,0,0.245148321753905,0,0.392616934229891,0,0,0,0.375935671919414,0.580120991762195,0,0,0,0,0,0.458729283404541,1.29005624836306,0,0.271965960763659,0,1.0580536810308,0,0,0,0.504665699340316,0,0,0,0,0.18378979906969,0.250707539292375,0.303114792872958,0.267964130156178,2.48750831837634,0.724030971033267,0.213233981900981,0.952257725854961,0.0645889098360061,0.186224142887574,0,0.700118741059814,1.21270313374932,0.435433495793923,1.36893320434112,0.134704106029175,0,0.332660356546013,0.162806537221949,0,0,0,0,0.366724332548599,0,0.665756774185513,0.805095174364105,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0.85870796139317,0.410623275218653,0.753255837568817,0.152826811495903,0.0821005894499457,0.157421562627358,0,0,0,0,0,0,0,0,0.587200878669695,0,0.200544447470142,0,0,0,0,0,0,0,0,0,0.309706370895104,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32171328579026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196468613246569,0,0,0,0,0,0,0,0,2.18638648103376,0,0.347140501607594,0,0.419499436209906,2.20094433552054,0.626984899610432,2.32575083252396,2.13459757612026,5.02080919147005,0.402829317109147,0,0.488124115096339,0.735326160691737,3.24056779152704,3.48268940307911,1.79623498100936,3.82879033643296,0,0.949265659568129,0.549605231791222,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132529768321485,0.348581828608555,0.829288440122964,0.504641701751257,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0.433099343283221,0,1.14152491340759,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207328115540772,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.977208552881205,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.28685161800217,2.60279707715243,0,0.837581326671744,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116210378459959,0,0,0,0.114814448164607,0,0,0,0.231046011313244,0,0,0,0,0.510281115829547,1.0795795805107,0,0,0.501689773854853,0,0,0,0,0,0,0,0,0.412164046590889,0,0,0,0,0,0,0,0.15350367472613,0,0,0,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.682499557039929,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.12972560932135,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.11598390910176,0,0.766021480529467,0.211673582723883,0,0,0,0,2.50634477090067,0.338583555603207,0,0,0,0,0,0,0,0,0,0,0,0.66614393599564,0,0,0.879049075631364,0.242721043499027,0,0,0,0,0,0,0.281338832821026,0,0,0,0.19924798825107,0.552567831062295,0,0,0,0,0,0,0,1.1837208676432,0,0,0.969332746095218,0.185536196323703,0,0,0,0,0,0,0,0.344743373241465,0,0,0,0.482385754501632,0,0.331737779793674,0,0.438770794307945,0,0,0.384751292518985,0,0,0,0,0,0.183195186803725,0,0,0,0,0,0,0,0,0,3.37596903244843,5.38668266925187,0,0.649165919226273,0,0.619202951523374,0,0,0,0,0.67401132980677,0.802577647298789,0.468528891450678,0,0,0,0,0,0.30607276163049,0.505492637027904,0.300646838828985,0.207376382794494,0,0,0,0,0,0,0.694238953340524,0,0,0.17472666824203,0,0,0,0,0.290967049465258,0,0,0,0,0.569797163602908,0.195551382734803,0,0,0,0,0,0,0,0,0,0,0,0.713987523454252,0,0.600420288709789,1.09524303113594,1.27746588066972,0,0,0.279282401272254,0.916641696046735,2.87149209830726,0.399358000997982,0,1.56220020209311,1.67958681216816,0,0,0,0,0,0,0,0.795229689809303,1.49823746722733,0.482259445395058,0.275078873194468,0.415440338029185,0,0,0.546746009922222,0,0.236417121897595,0.157363764404994,0,0,0,1.42939065274673,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0.258565912723101,1.3223260174269,0,0,1.28144895081234,0.943225830597996,0.414239055347196,0,0,0,0,0.544017803369474,1.7548292581589,0.306345576763462,0,0,0,0.366078794705889,1.001527445652,1.72022758707021,1.10929051536852,0.931446044120752,0.276697269872462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02496607435179,0,0,0.967809053062115,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.3687002508852,0.578063025868136,0,0.478901577171454,0.205116364240755,0,0.207471757392654,0.645902582527404,2.85538840518309,0,0,0,0,0,0,0,0.676892955143315,0,0,0,0,0,0.607838261565552,1.56215619722769,0,0.887821342714695,0,0,0.496211178389294,0,0,0,0.336283722218824,0.606965604236632,1.13831095675649,2.04015451374069,0,0,1.15548546060614,0.526182188502793,0,0,0.549451649953598,1.09980912941201,0,0,0.647782773655864,2.8665101273223,0.285906176706625,0,0,3.99874026295933,0,0,0,0,0,0,0,0.423387050190929,0,0.62041277132864,0,1.67783147696688,0,0,0.647428837187895,0.102662806856247,0,0,0.467878926924211,0,0,0.33883824611688,0,0,0.617393264863557,0.655678681511872,0,0.245148321753905,0,0.392616934229891,0,0,0,0.375935671919414,0.580120991762195,0,0,0,0,0,0.458729283404541,1.29005624836306,0,0.271965960763659,0,1.0580536810308,0,0,0,0.504665699340316,0,0,0,0,0.18378979906969,0.250707539292375,0.303114792872958,0.267964130156178,2.48750831837634,0.724030971033267,0.213233981900981,0.952257725854961,0.0645889098360061,0.186224142887574,0,0.700118741059814,1.21270313374932,0.435433495793923,1.36893320434112,0.134704106029175,0,0.332660356546013,0.162806537221949,0,0,0,0,0.366724332548599,0,0.665756774185513,0.805095174364105,0 | ||
|short_description=p8@PREX2 | |short_description=p8@PREX2 | ||
}} | }} |
Latest revision as of 22:37, 18 September 2015
Short description: | p8@PREX2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_PREX2_5end |
Coexpression cluster: | NA |
Association with transcript: | -104bp_to_uc003xxt.2_5end |
EntrezGene: | PREX2 |
HGNC: | 22950 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of vascular tree | 3.62e-16 | 24 |
endothelial cell of umbilical vein | 5.47e-14 | 3 |
endothelial cell | 3.71e-12 | 36 |
lymphangioblast | 1.21e-11 | 6 |
endothelial cell of lymphatic vessel | 1.21e-11 | 6 |
vascular lymphangioblast | 1.21e-11 | 6 |
meso-epithelial cell | 2.83e-09 | 45 |
blood vessel endothelial cell | 3.35e-08 | 18 |
embryonic blood vessel endothelial progenitor cell | 3.35e-08 | 18 |
lining cell | 5.48e-08 | 58 |
barrier cell | 5.48e-08 | 58 |
vein endothelial cell | 3.43e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
brainstem | 6.14e-11 | 6 |
cardiac atrium | 1.46e-09 | 2 |
future cardiac atrium | 1.46e-09 | 2 |
lymphatic vessel | 9.64e-09 | 8 |
lymph vasculature | 9.64e-09 | 8 |
lymphatic part of lymphoid system | 9.64e-09 | 8 |
umbilical vein | 1.47e-08 | 5 |
blood vessel endothelium | 3.35e-08 | 18 |
endothelium | 3.35e-08 | 18 |
cardiovascular system endothelium | 3.35e-08 | 18 |
regional part of nervous system | 3.60e-08 | 53 |
regional part of brain | 3.60e-08 | 53 |
segmental subdivision of nervous system | 1.11e-07 | 13 |
anatomical conduit | 1.27e-07 | 240 |
neural tube | 1.28e-07 | 56 |
neural rod | 1.28e-07 | 56 |
future spinal cord | 1.28e-07 | 56 |
neural keel | 1.28e-07 | 56 |
adult organism | 2.06e-07 | 114 |
neural nucleus | 3.49e-07 | 9 |
nucleus of brain | 3.49e-07 | 9 |
lymphoid system | 5.37e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
clear cell adenocarcinoma | 3.83e-10 | 2 |