FFCP PHASE1:Hg19::chr21:47533982..47533991,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1292 | |EntrezGene=1292 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2212 | |HGNC=2212 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=451bp_to_ENST00000485591_5end | |association_with_transcript=451bp_to_ENST00000485591_5end | ||
|cluster_id=chr21:47533982..47533991,+ | |||
|description=CAGE_peak_33_at_COL6A2_5end | |description=CAGE_peak_33_at_COL6A2_5end | ||
|id=chr21:47533982..47533991,+ | |id=chr21:47533982..47533991,+ | ||
|ontology_enrichment_celltype=CL:0000055!2.33e-51!180;CL:0000057!4.28e-26!75;CL:0000048!7.22e-21!430;CL:0000183!3.74e-20!59;CL:0000723!5.96e-20!436;CL:0000680!2.19e-19!57;CL:0000056!2.19e-19!57;CL:0000355!2.19e-19!57;CL:0000187!3.90e-19!54;CL:0000034!8.98e-19!444;CL:0002371!3.72e-17!591;CL:0000393!6.68e-16!60;CL:0000211!6.68e-16!60;CL:0000144!6.00e-15!625;CL:0000548!7.96e-15!679;CL:0000004!7.96e-15!679;CL:0000255!7.96e-15!679;CL:0000192!1.19e-14!42;CL:0000514!1.19e-14!42;CL:0000012!1.65e-14!682;CL:0002620!1.09e-12!23;CL:0002320!1.23e-10!365;CL:0000003!1.53e-10!722;CL:0000219!3.39e-10!390;CL:0002570!2.44e-09!8;CL:0000359!1.07e-08!32;CL:0000134!1.17e-08!358;CL:0000499!2.33e-08!27;CL:0000222!1.75e-07!119;CL:0000188!8.38e-07!9 | |ontology_enrichment_celltype=CL:0000055!2.33e-51!180;CL:0000057!4.28e-26!75;CL:0000048!7.22e-21!430;CL:0000183!3.74e-20!59;CL:0000723!5.96e-20!436;CL:0000680!2.19e-19!57;CL:0000056!2.19e-19!57;CL:0000355!2.19e-19!57;CL:0000187!3.90e-19!54;CL:0000034!8.98e-19!444;CL:0002371!3.72e-17!591;CL:0000393!6.68e-16!60;CL:0000211!6.68e-16!60;CL:0000144!6.00e-15!625;CL:0000548!7.96e-15!679;CL:0000004!7.96e-15!679;CL:0000255!7.96e-15!679;CL:0000192!1.19e-14!42;CL:0000514!1.19e-14!42;CL:0000012!1.65e-14!682;CL:0002620!1.09e-12!23;CL:0002320!1.23e-10!365;CL:0000003!1.53e-10!722;CL:0000219!3.39e-10!390;CL:0002570!2.44e-09!8;CL:0000359!1.07e-08!32;CL:0000134!1.17e-08!358;CL:0000499!2.33e-08!27;CL:0000222!1.75e-07!119;CL:0000188!8.38e-07!9 | ||
|ontology_enrichment_celltype_v019=CL:0002570;6.40e-12;8!CL:0002603;3.86e-08;3!CL:0000327;8.54e-08;15!CL:0000057;1.17e-07;73!CL:0000138;1.87e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.16e-13,76;CL:0002570,3.09e-12,8;CL:0000048,3.21e-12,427;CL:0000723,7.83e-12,433;CL:0000034,2.47e-11,441;CL:0000187,1.49e-09,55;CL:0000680,7.56e-09,58;CL:0000056,7.56e-09,58;CL:0000355,7.56e-09,58;CL:0000192,1.40e-08,43;CL:0000514,1.40e-08,43;CL:0002603,2.04e-08,3;CL:0000393,3.24e-08,61;CL:0000211,3.24e-08,61;CL:0000327,7.24e-08,15;CL:0002320,7.48e-08,361;CL:0000058,1.96e-07,6;CL:0000138,1.96e-07,6 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!9.50e-26!83;UBERON:0002329!9.50e-26!83;UBERON:0003077!9.50e-26!83;UBERON:0003059!9.50e-26!83;UBERON:0007282!9.50e-26!83;UBERON:0009618!9.50e-26!83;UBERON:0007285!9.50e-26!83;UBERON:0004290!4.26e-23!70;UBERON:0000486!7.96e-21!82;UBERON:0001134!4.25e-18!61;UBERON:0002036!4.25e-18!61;UBERON:0003082!4.25e-18!61;UBERON:0002385!4.41e-17!63;UBERON:0001015!4.41e-17!63;UBERON:0000383!4.41e-17!63;UBERON:0005256!1.79e-15!143;UBERON:0003102!3.05e-13!95;UBERON:0002384!8.19e-11!375;UBERON:0002199!9.01e-10!45;UBERON:0002416!9.01e-10!45;UBERON:0002097!5.52e-09!40;UBERON:0000490!1.78e-08!138;UBERON:0000475!2.79e-08!365;UBERON:0002204!3.62e-07!167;UBERON:0002100!3.81e-07!216 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007524,2.87e-10,73;UBERON:0002329,1.30e-09,71;UBERON:0003059,1.30e-09,71;UBERON:0007282,1.30e-09,71;UBERON:0004290,1.30e-09,71;UBERON:0009618,1.30e-09,71;UBERON:0003077,2.07e-09,72;UBERON:0007285,2.07e-09,72;UBERON:0007503,2.56e-08,78;UBERON:0001134,5.08e-08,62;UBERON:0002036,5.08e-08,62;UBERON:0003082,5.08e-08,62;UBERON:0002384,7.06e-08,371;UBERON:0002385,1.20e-07,64;UBERON:0001015,1.20e-07,64;UBERON:0000383,1.20e-07,64;UBERON:0000486,1.55e-07,83 | |||
|phase1_expression=0.181678379270557,0,0,0,0,0,0,0,0.261185628199839,0.245733936501509,0,0,0,1.11389717664042,0,2.01697543935533,0,0.730310090387373,0,1.84681587115182,1.22400414746552,1.56727360739044,0.286235987131057,0.410623275218653,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.511450247374121,2.1686349143074,6.01605492763067,1.15877215168659,1.5905718941022,0,0.0945348171640679,0,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0.860234595106124,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0.12663051166458,0,0,0.709336764396714,0,0,0,1.24484414159907,0.134710672069688,0.653847612453835,1.66493170409425,1.72852777344,1.64025002283658,0.624320153660641,0.570471821544449,0.298897361103602,0.469737994575059,0.971237666208789,1.26405726032024,1.22492502752936,0.368502951935304,0.206651562351531,1.18800285728205,1.23633464639278,1.82032272387605,0.718618141816238,1.34668891163253,1.25118519871964,0.277064115484183,0.877955241761676,0.612975591598039,0.300476117813194,0.113432183160021,0.179389635688862,4.69826255400848,3.17897851739343,0.300091096084402,0.721367704669072,0,3.16398655763703,0,1.46155507741798,0,1.38074847963449,0.969876340912871,0,1.5112814734146,3.39121184620975,0,0,0,0,0,0,0,0,0,3.12899064659632,0,1.38134921352481,0,0,0,0,0,0,0,0,0,0,0,0,0,2.057870056657,0,0,0,0,0,0,0,0,0,0,0,0.977424915930974,2.07986957055916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.45770409648969,0,1.6134422880609,0.129271715757778,14.3062578340753,0.845302752556,1.86156681609409,1.04007436911366,1.28603687131071,0,0.532844358032199,0.428933980974443,1.08524321078289,0,0.325736184293735,0.355391948742546,0.791951872933429,0,0,0,0,0,0,1.4377491329495,1.14861935834114,0,0,0.205476322550383,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,1.34960640891054,0.500170521059677,0.813795071099207,0.831883446123229,0,0.630809660135739,0,0.300946099727719,0,0,5.31380478828349,0.184369168541703,1.47702144595741,3.32861967686659,1.37257369524342,0,0,0,0,0,0.30239029332968,0.248107807818777,0,0,0.384417447767103,0,0,0,2.62156479464514,0.355123450626254,3.12083192852475,0.519254429183621,1.51073491997947,0,0,0,0.459257792658427,0.364182336013434,0.393373244878272,0,0,0,0,0,0,0,0,0,0.270946437543853,0,0,0,0,0,0,0,0,0,0,0,0.247528499761764,0,0,0,3.86682873168488,0.924291702687866,0.460511024178389,0.275673144969061,1.18162269355101,0.870100163485371,0.426133137080504,3.73934549716297,0,0,0,0,0,0,0,0.308033580176089,1.59691809095107,1.73986598415015,0.74129687641568,0.143124886741991,0.744316738719335,0.316379424718726,0,1.535386747868,0,7.31867470229655,0,0.899362287916574,0,0.235624804691373,0.808729926293264,0,0.421258456238981,1.46290121726877,0.487426979262569,0,2.8664981395677,0.707027159768564,1.13008116620243,1.10273068709225,1.32687795048244,0,1.15755106853338,1.9676842561399,0,0.30982349809975,1.12678241012897,0.430234056612155,0.294747123039363,0.35667105148125,2.83808851256478,0.211107635297664,0.658589785919804,3.41525856389144,1.04980416073495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.191505370132367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.445234820091624,0,0,0,0,0,0,0,0.311039587661807,0.269605053441981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0882561266915003,0,0,0.19871461170299,0,0.195551382734803,0,0,0,0,0,0,0,0.124252535565433,0,0.543616824294456,0.418411385249333,0.815985741090574,0.288950589901519,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0984274815147488,0,0,0,0,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0.226624183040251,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.124980407962107,0,0,0,0,0,1.79105763464249,1.40227985908335,1.66441758450784,0.757612021100357,0.754703705257725,2.66943366478961,0,0.453692771289717,0.777186002913902,0.443565449968902,0.318593534327405,0.899606224327209,1.08684069813382,0.414706207840855,0.265841714557995,0.521745061811734,0.150257608997218,0.380805212168795,0,0.363697318405119,0.322231671127465,0,0,0,3.09056134664514,4.71449284272287,1.26184898228651,0,0,0,0.453411851024545,0.926089897295336,0,0,0,0,0,0,0,0,0,0.303859956177382,0,0,0,0,0,0,0,0,0,0,0.567515953566836,0.552317850755522,0,0,0,0,0,0,0,0,0,0,0.318004350653419,0,0,1.05802783107205,0.3062454773532,0,0,0,0,0,0,0,0,0,0,0,0,0,1.3807198521202,0.397832444232549,0,1.81534561833168,0,0,0.163771917510097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.514464028312255,0,0,0.118193840883968,0.889851215136553,0,0,0,0,0.215927591218621,0,0,0,0,0,0,0,0,0,0,0.473328002922261,0.0852134047591577,0,0,0.31020638566432,0,0,0,0,0,0.102662806856247,0,0.485710993059139,0,0,0,0.11294608203896,0,0,0,0,0,0,0,0,0,0,1.0195626881269,0,0,0,0,0,0,0,0,0,0,0,0,0,2.60396512716726,0.462175628631418,0.432626562123789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0717222053926763,0,0.0814032686109745,0.213454691755431,0,0,0,0,0,0,0,0 | |phase1_expression=0.181678379270557,0,0,0,0,0,0,0,0.261185628199839,0.245733936501509,0,0,0,1.11389717664042,0,2.01697543935533,0,0.730310090387373,0,1.84681587115182,1.22400414746552,1.56727360739044,0.286235987131057,0.410623275218653,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.511450247374121,2.1686349143074,6.01605492763067,1.15877215168659,1.5905718941022,0,0.0945348171640679,0,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0.860234595106124,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0.12663051166458,0,0,0.709336764396714,0,0,0,1.24484414159907,0.134710672069688,0.653847612453835,1.66493170409425,1.72852777344,1.64025002283658,0.624320153660641,0.570471821544449,0.298897361103602,0.469737994575059,0.971237666208789,1.26405726032024,1.22492502752936,0.368502951935304,0.206651562351531,1.18800285728205,1.23633464639278,1.82032272387605,0.718618141816238,1.34668891163253,1.25118519871964,0.277064115484183,0.877955241761676,0.612975591598039,0.300476117813194,0.113432183160021,0.179389635688862,4.69826255400848,3.17897851739343,0.300091096084402,0.721367704669072,0,3.16398655763703,0,1.46155507741798,0,1.38074847963449,0.969876340912871,0,1.5112814734146,3.39121184620975,0,0,0,0,0,0,0,0,0,3.12899064659632,0,1.38134921352481,0,0,0,0,0,0,0,0,0,0,0,0,0,2.057870056657,0,0,0,0,0,0,0,0,0,0,0,0.977424915930974,2.07986957055916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.45770409648969,0,1.6134422880609,0.129271715757778,14.3062578340753,0.845302752556,1.86156681609409,1.04007436911366,1.28603687131071,0,0.532844358032199,0.428933980974443,1.08524321078289,0,0.325736184293735,0.355391948742546,0.791951872933429,0,0,0,0,0,0,1.4377491329495,1.14861935834114,0,0,0.205476322550383,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,1.34960640891054,0.500170521059677,0.813795071099207,0.831883446123229,0,0.630809660135739,0,0.300946099727719,0,0,5.31380478828349,0.184369168541703,1.47702144595741,3.32861967686659,1.37257369524342,0,0,0,0,0,0.30239029332968,0.248107807818777,0,0,0.384417447767103,0,0,0,2.62156479464514,0.355123450626254,3.12083192852475,0.519254429183621,1.51073491997947,0,0,0,0.459257792658427,0.364182336013434,0.393373244878272,0,0,0,0,0,0,0,0,0,0.270946437543853,0,0,0,0,0,0,0,0,0,0,0,0.247528499761764,0,0,0,3.86682873168488,0.924291702687866,0.460511024178389,0.275673144969061,1.18162269355101,0.870100163485371,0.426133137080504,3.73934549716297,0,0,0,0,0,0,0,0.308033580176089,1.59691809095107,1.73986598415015,0.74129687641568,0.143124886741991,0.744316738719335,0.316379424718726,0,1.535386747868,0,7.31867470229655,0,0.899362287916574,0,0.235624804691373,0.808729926293264,0,0.421258456238981,1.46290121726877,0.487426979262569,0,2.8664981395677,0.707027159768564,1.13008116620243,1.10273068709225,1.32687795048244,0,1.15755106853338,1.9676842561399,0,0.30982349809975,1.12678241012897,0.430234056612155,0.294747123039363,0.35667105148125,2.83808851256478,0.211107635297664,0.658589785919804,3.41525856389144,1.04980416073495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.191505370132367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.445234820091624,0,0,0,0,0,0,0,0.311039587661807,0.269605053441981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0882561266915003,0,0,0.19871461170299,0,0.195551382734803,0,0,0,0,0,0,0,0.124252535565433,0,0.543616824294456,0.418411385249333,0.815985741090574,0.288950589901519,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0984274815147488,0,0,0,0,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0.226624183040251,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.124980407962107,0,0,0,0,0,1.79105763464249,1.40227985908335,1.66441758450784,0.757612021100357,0.754703705257725,2.66943366478961,0,0.453692771289717,0.777186002913902,0.443565449968902,0.318593534327405,0.899606224327209,1.08684069813382,0.414706207840855,0.265841714557995,0.521745061811734,0.150257608997218,0.380805212168795,0,0.363697318405119,0.322231671127465,0,0,0,3.09056134664514,4.71449284272287,1.26184898228651,0,0,0,0.453411851024545,0.926089897295336,0,0,0,0,0,0,0,0,0,0.303859956177382,0,0,0,0,0,0,0,0,0,0,0.567515953566836,0.552317850755522,0,0,0,0,0,0,0,0,0,0,0.318004350653419,0,0,1.05802783107205,0.3062454773532,0,0,0,0,0,0,0,0,0,0,0,0,0,1.3807198521202,0.397832444232549,0,1.81534561833168,0,0,0.163771917510097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.514464028312255,0,0,0.118193840883968,0.889851215136553,0,0,0,0,0.215927591218621,0,0,0,0,0,0,0,0,0,0,0.473328002922261,0.0852134047591577,0,0,0.31020638566432,0,0,0,0,0,0.102662806856247,0,0.485710993059139,0,0,0,0.11294608203896,0,0,0,0,0,0,0,0,0,0,1.0195626881269,0,0,0,0,0,0,0,0,0,0,0,0,0,2.60396512716726,0.462175628631418,0.432626562123789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0717222053926763,0,0.0814032686109745,0.213454691755431,0,0,0,0,0,0,0,0 | ||
|short_description=p33@COL6A2 | |short_description=p33@COL6A2 | ||
}} | }} |
Latest revision as of 22:57, 18 September 2015
Short description: | p33@COL6A2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_33_at_COL6A2_5end |
Coexpression cluster: | NA |
Association with transcript: | 451bp_to_ENST00000485591_5end |
EntrezGene: | COL6A2 |
HGNC: | 2212 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.16e-13 | 76 |
mesenchymal stem cell of adipose | 3.09e-12 | 8 |
multi fate stem cell | 3.21e-12 | 427 |
somatic stem cell | 7.83e-12 | 433 |
stem cell | 2.47e-11 | 441 |
muscle cell | 1.49e-09 | 55 |
muscle precursor cell | 7.56e-09 | 58 |
myoblast | 7.56e-09 | 58 |
multi-potent skeletal muscle stem cell | 7.56e-09 | 58 |
smooth muscle cell | 1.40e-08 | 43 |
smooth muscle myoblast | 1.40e-08 | 43 |
astrocyte of the cerebellum | 2.04e-08 | 3 |
electrically responsive cell | 3.24e-08 | 61 |
electrically active cell | 3.24e-08 | 61 |
extracellular matrix secreting cell | 7.24e-08 | 15 |
connective tissue cell | 7.48e-08 | 361 |
chondroblast | 1.96e-07 | 6 |
chondrocyte | 1.96e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
dense mesenchyme tissue | 2.87e-10 | 73 |
somite | 1.30e-09 | 71 |
presomitic mesoderm | 1.30e-09 | 71 |
presumptive segmental plate | 1.30e-09 | 71 |
dermomyotome | 1.30e-09 | 71 |
trunk paraxial mesoderm | 1.30e-09 | 71 |
paraxial mesoderm | 2.07e-09 | 72 |
presumptive paraxial mesoderm | 2.07e-09 | 72 |
epithelial vesicle | 2.56e-08 | 78 |
skeletal muscle tissue | 5.08e-08 | 62 |
striated muscle tissue | 5.08e-08 | 62 |
myotome | 5.08e-08 | 62 |
connective tissue | 7.06e-08 | 371 |
muscle tissue | 1.20e-07 | 64 |
musculature | 1.20e-07 | 64 |
musculature of body | 1.20e-07 | 64 |
multilaminar epithelium | 1.55e-07 | 83 |