FFCP PHASE1:Hg19::chr2:187454877..187454882,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr2:187454877..187454882,+ to FFCP PHASE1:Hg19::chr2:187454877..187454882,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3685 | |EntrezGene=3685 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6150 | |HGNC=6150 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=70bp_to_ENST00000374907_5end | |||
|cluster_id=chr2:187454877..187454882,+ | |||
|description=CAGE_peak_5_at_ITGAV_5end | |||
|id=chr2:187454877..187454882,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006215;1.23e-07;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!1.31e-15!57;UBERON:0005068!1.31e-15!57;UBERON:0006241!1.31e-15!57;UBERON:0007135!1.31e-15!57;UBERON:0005743!2.60e-14!86;UBERON:0001017!2.71e-14!82;UBERON:0002616!5.99e-14!59;UBERON:0000955!1.11e-13!69;UBERON:0006238!1.11e-13!69;UBERON:0000073!1.44e-12!94;UBERON:0001016!1.44e-12!94;UBERON:0003080!6.16e-12!42;UBERON:0002780!1.20e-11!41;UBERON:0001890!1.20e-11!41;UBERON:0006240!1.20e-11!41;UBERON:0003075!9.82e-11!86;UBERON:0007284!9.82e-11!86;UBERON:0002346!2.60e-10!90;UBERON:0000033!1.28e-09!123;UBERON:0001893!1.39e-09!34;UBERON:0007023!1.94e-09!115;UBERON:0002020!2.76e-09!34;UBERON:0003528!2.76e-09!34;UBERON:0002791!3.04e-09!33;UBERON:0001869!5.20e-09!32;UBERON:0000153!1.15e-08!129;UBERON:0007811!1.15e-08!129;UBERON:0000483!3.70e-08!309;UBERON:0000119!4.30e-08!312;UBERON:0000475!5.41e-08!365;UBERON:0003056!6.10e-08!61;UBERON:0000468!7.77e-08!659;UBERON:0000062!9.43e-08!511;UBERON:0000467!1.29e-07!625;UBERON:0000480!1.94e-07!626;UBERON:0004121!2.75e-07!169;UBERON:0000924!3.80e-07!173;UBERON:0006601!3.80e-07!173;UBERON:0004111!5.49e-07!241;UBERON:0000025!5.88e-07!194 | |||
|ontology_enrichment_uberon_v019=UBERON:0004457;4.28e-09;9!UBERON:0000042;4.28e-09;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,7.85e-12,56;UBERON:0005068,7.85e-12,56;UBERON:0006241,7.85e-12,56;UBERON:0007135,7.85e-12,56;UBERON:0001017,3.19e-10,81;UBERON:0000073,8.39e-10,53;UBERON:0002616,8.39e-10,53;UBERON:0001016,1.24e-09,89;UBERON:0003075,2.36e-09,82;UBERON:0007284,2.36e-09,82;UBERON:0010314,6.26e-09,132;UBERON:0002346,1.16e-08,86;UBERON:0000955,1.80e-08,68;UBERON:0006238,1.80e-08,68;UBERON:0003076,2.42e-07,15;UBERON:0003057,2.42e-07,15;UBERON:0010371,5.36e-07,104 | |||
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|phase1_expression=1.09007027562334,0.642301571672949,1.12763523276777,0,1.34088328328186,0.872338524100369,0,0,0.261185628199839,0.245733936501509,0,1.09220686065086,0.263766978228454,0.37129905888014,0.331397375727916,0.672325146451775,0,0.730310090387373,1.46379839637152,0.369363174230364,0.204000691244253,0,0.572471974262113,0.410623275218653,0.251085279189606,0,0.0821005894499457,0.0787107813136792,0,0,0,0,0,0,0,0.568676929949686,0,0.553995408531877,1.00272223735071,0.434021741431704,0.671746422719773,0.32389366601898,0.515151135268373,0,0.377875943688809,0.970336244751265,0.464858073811369,0.822335776043652,0.619412741790207,0,0,0,0.344745680736619,0,0,0.564727018627814,0.272906150057846,0.449446968890169,0.306083892370903,0.320929027076094,0.639337125799041,0,0,0.426224750532694,0,0,0,0,0.521482918420201,0,0.605399502633369,0.368277635987565,0.316462387440884,0,0,0,0,0,0.16072558669708,0,0,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0,0,0.167186495390678,0,0,0,0,0.294605907474837,0,0,0.128091319725675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150575119077773,0,0,0,0,0.201606743224732,0,0,0,0,0.255725123687061,0.722878304769133,0.50133791063589,0,0,1.45990461090791,0.756278537312543,0.665188192387692,0.527008714158756,0.196468613246569,0,0,0,0.348259474598534,0.26591592103773,0,0,0,0,0,0,0,0,0.275118041940067,0,0.258416759169329,0.71153252537342,0.66944122552934,0.402829317109147,0,0.488124115096339,0,0,0.446498641420399,0.44905874525234,0.337834441449967,0,0.949265659568129,0.366403487860815,0,0,0,1.98788780678127,0.759783069987479,1.32409180813219,2.58152958673932,0.354668382198357,0.560677600142307,1.06748995729705,0.74000264525148,1.24484414159907,0.808264032418128,0.980771418680752,0.908144565869588,0,0.234321431833797,0.624320153660641,0,0.448346041655403,0.587172493218824,0.485618833104395,0.140450806702248,0.408308342509787,0.122834317311768,0.309977343527296,0,0.494533858557114,0,0,0.505008341862199,0.375355559615893,0.277064115484183,0,0,1.05166641234618,0.340296549480063,0.717558542755448,0.427114777637135,0.423863802319124,1.20036438433761,0.309157587715317,0.257640540045629,0.558350568994769,1.35021065793013,0.389748020644795,0.504867548488229,0.460249493211497,0.484938170456436,2.13005755509969,0.604512589365842,0.508681776931463,0.773043412653187,0.818238361772504,0.573609190778008,0,0,0.232387885739037,0,0.504641701751257,0,0,0.643240938192885,1.38134921352481,0,0.721879481669586,0,0,0,0.110293972732394,0,0,0.134831308160164,0.196221465125346,0,0,0,0,0,0,0.982827216677626,0,0.441463099414651,0.122988438543114,0.171567810298526,0.548751427043128,0,0.100528972411631,0.0925884451585296,0,0,0,0.811512834825538,1.76113041353732,0.433099343283221,0,0.380508304469197,0,0,0.738651018262192,0.468008530278475,0.297262324577456,0,0.839910640994298,0.850650583454319,0.447792613514241,0.290633938513962,0,0.492663237895943,0,0.207328115540772,0.288239906833923,0,0.507983154337352,0.381988425558278,2.34434894420094,0,0.205654985406647,0.300343057843917,0,0.336393253036082,0,0.51336800074665,1.16344544182,0,0.845302752556,0.797814349754612,0,0,0,0.266422179016099,0.285955987316295,0,0,0.977208552881205,1.42156779497018,0,0.301439377059586,0.871533458600294,0.099972991182057,0,2.00902836572851,0,0.718874566474748,0,1.42636905040718,0.434343920002738,0.61642896765115,1.43248770591916,0,0,0.215627574859517,0,1.01637849688985,0,0.773288812777695,0.335032530668698,0,0,0,0,0.613457458595699,0.500170521059677,0.542530047399471,0.831883446123229,0.535286966391485,0.788512075169673,1.17141414992713,0,0,0,1.32845119707087,0.184369168541703,0.868836144680828,0.195801157462741,0.343143423810856,0.206768026122887,0,0.213455115606889,0,0,0.30239029332968,1.24053903909388,0.920771839728375,0.280660094433074,1.40953064181271,2.04682899626681,0.804269605718038,1.48418066444991,0.616838775210622,0.710246901252508,0.821271560138091,1.03850885836724,0.813472649219715,0.120859449591622,1.20303882181971,0.0920809889358963,0.34444334449382,0.546273504020151,0.393373244878272,0.902399225814824,0.462092022626489,0,0,0.527758144464379,0,0,0.431831832204279,0,0.270946437543853,0,0.254876273045038,0,0,0,0,0.256450125116389,0,0.976135183992909,0.206082023295445,0.27470839445503,0.660075999364704,0,0,1.6068392984416,0.096670718292122,0.154048617114644,0.307007349452259,0.275673144969061,0.537101224341368,0.435050081742686,0.255679882248303,0.801288320820636,0.661139661443912,0.384380134730212,0.510450849978337,0.4046311234222,0,2.20368642781448,0.6970372701606,0,0,0,1.66791797193528,0.143124886741991,0.372158369359667,0.632758849437452,0.190630193923825,0,0,0.636406495851874,0,1.07923474549989,0.823611089208164,0.589062011728432,0.404364963146632,0,0,0,0.731140468893853,0,1.36499911407986,0.989838023675989,0,0.551365343546124,0.66343897524122,0.438450885253763,0,0.655894752046633,0.405820753925408,0,0,0,0.589494246078727,0,0,1.47775344708365,0.658589785919804,0,0,0.192444225451024,0,0,0.941438007767792,0.43050537267123,0,0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| ||
|short_description=p5@ITGAV | |||
}} | }} |
Latest revision as of 23:32, 18 September 2015
Short description: | p5@ITGAV |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_ITGAV_5end |
Coexpression cluster: | NA |
Association with transcript: | 70bp_to_ENST00000374907_5end |
EntrezGene: | ITGAV |
HGNC: | 6150 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural tube | 7.85e-12 | 56 |
neural rod | 7.85e-12 | 56 |
future spinal cord | 7.85e-12 | 56 |
neural keel | 7.85e-12 | 56 |
central nervous system | 3.19e-10 | 81 |
regional part of nervous system | 8.39e-10 | 53 |
regional part of brain | 8.39e-10 | 53 |
nervous system | 1.24e-09 | 89 |
neural plate | 2.36e-09 | 82 |
presumptive neural plate | 2.36e-09 | 82 |
structure with developmental contribution from neural crest | 6.26e-09 | 132 |
neurectoderm | 1.16e-08 | 86 |
brain | 1.80e-08 | 68 |
future brain | 1.80e-08 | 68 |
posterior neural tube | 2.42e-07 | 15 |
chordal neural plate | 2.42e-07 | 15 |
ecto-epithelium | 5.36e-07 | 104 |