FFCP PHASE1:Hg19::chr18:21269438..21269450,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3909 | |EntrezGene=3909 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6483 | |HGNC=6483 | ||
|TSSclassifier=strong | |||
|UniProt=Q16787,Q6VU67,F5GWM0,F5H8G3,Q566Q1 | |UniProt=Q16787,Q6VU67,F5GWM0,F5H8G3,Q566Q1 | ||
|association_with_transcript=-111bp_to_ENST00000313654,ENST00000399516,ENST00000416669,ENST00000538801,NM_001127717,NM_198129,uc002kuq.2,uc002kur.2,uc010dlv.1_5end | |association_with_transcript=-111bp_to_ENST00000313654,ENST00000399516,ENST00000416669,ENST00000538801,NM_001127717,NM_198129,uc002kuq.2,uc002kur.2,uc010dlv.1_5end | ||
|cluster_id=chr18:21269438..21269450,+ | |||
|coexpression_cluster_id=C96 | |coexpression_cluster_id=C96 | ||
|description=CAGE_peak_6_at_LAMA3_5end | |description=CAGE_peak_6_at_LAMA3_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000066!7.32e-15!254;CL:0000076!2.04e-09!62 | |ontology_enrichment_celltype=CL:0000066!7.32e-15!254;CL:0000076!2.04e-09!62 | ||
|ontology_enrichment_celltype_v019= | |ontology_enrichment_celltype_v019= | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0005795;1.38e-07;10 | |ontology_enrichment_development_v019=UBERON:0005795;1.38e-07;10 | ||
|ontology_enrichment_disease=DOID:305!3.74e-12!106;DOID:0050687!5.09e-09!143;DOID:1749!3.18e-07!14 | |ontology_enrichment_disease=DOID:305!3.74e-12!106;DOID:0050687!5.09e-09!143;DOID:1749!3.18e-07!14 | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004119!3.65e-11!169;UBERON:0000925!3.65e-11!169;UBERON:0006595!3.65e-11!169;UBERON:0001007!6.06e-11!155;UBERON:0001555!6.06e-11!155;UBERON:0007026!6.06e-11!155;UBERON:0004921!4.33e-09!129;UBERON:0004185!4.33e-09!129;UBERON:0001046!5.47e-09!19;UBERON:0005153!1.03e-08!37;UBERON:0000162!1.11e-07!14;UBERON:0001353!1.11e-07!14;UBERON:0000163!1.11e-07!14;UBERON:0006866!1.11e-07!14;UBERON:0000164!1.11e-07!14;UBERON:0000931!1.11e-07!14;UBERON:0000077!1.14e-07!130;UBERON:0005157!1.43e-07!51;UBERON:0001008!3.56e-07!45;UBERON:0003064!7.43e-07!37;UBERON:0006554!7.64e-07!44;UBERON:0004122!8.08e-07!15;UBERON:0008947!9.38e-07!38;UBERON:0003258!9.38e-07!38 | |ontology_enrichment_uberon=UBERON:0004119!3.65e-11!169;UBERON:0000925!3.65e-11!169;UBERON:0006595!3.65e-11!169;UBERON:0001007!6.06e-11!155;UBERON:0001555!6.06e-11!155;UBERON:0007026!6.06e-11!155;UBERON:0004921!4.33e-09!129;UBERON:0004185!4.33e-09!129;UBERON:0001046!5.47e-09!19;UBERON:0005153!1.03e-08!37;UBERON:0000162!1.11e-07!14;UBERON:0001353!1.11e-07!14;UBERON:0000163!1.11e-07!14;UBERON:0006866!1.11e-07!14;UBERON:0000164!1.11e-07!14;UBERON:0000931!1.11e-07!14;UBERON:0000077!1.14e-07!130;UBERON:0005157!1.43e-07!51;UBERON:0001008!3.56e-07!45;UBERON:0003064!7.43e-07!37;UBERON:0006554!7.64e-07!44;UBERON:0004122!8.08e-07!15;UBERON:0008947!9.38e-07!38;UBERON:0003258!9.38e-07!38 | ||
|ontology_enrichment_uberon_v019= | |ontology_enrichment_uberon_v019= | ||
|ontology_enrichment_uberon_v019_2= | |||
|phase1_expression=0,0.214100523890983,0,0,0,0,0,0,0,0.982935746006035,4.18680700783456,0,0,0.123766352960047,0,0,0,0,0,0.123121058076788,0,0.313454721478088,0,0,0,0,0,0,0,0.383829398097213,0,0.919421224478927,0.90361775633475,0.739508020333575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.449446968890169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255725123687061,1.0843174571537,0,0.144846518960824,0,0,0,0,0,1.0478326039817,0,0.370784442784429,0,0,0,0,0,0,0.993812036833525,0,0.694281003215189,1.13061588384802,0.419499436209906,0.275118041940067,0.626984899610432,1.55050055501597,1.42306505074684,0.66944122552934,0,0.760272105718513,0.488124115096339,1.83831540172934,0,0.982297011124877,0.22452937262617,1.23872628531654,0,0,0.366403487860815,0,0,0.436094052142534,0,0,0.794455084879313,0.286836620748814,0,0,0,0,0,0,0.163461903113459,0,0,0,0,0.570471821544449,0.149448680551801,0.469737994575059,0,0.140450806702248,0.408308342509787,0.245668634623536,0.103325781175765,0,0.989067717114227,0,0.718618141816238,0,0,0,0,0.30648779579902,0.600952235626387,0,0,0,0,0.300091096084402,0,0,0,0.168776332241266,0,0,0,0.969876340912871,0,0,0,0,0,0,0.121973706129595,0,0,0,0.252320850875628,0,0,0,0,0,0,0.591534000199219,0.505754070234305,0,0.110293972732394,0.435758888184812,0.237270619111097,0.269662616320329,0.392442930250692,0.38474715694639,0,0,0.4115740113314,0,0,0,0,0,0.245976877086227,0,0,0,0,0.370353780634118,0.651616610620649,0,0,0,0.117408694235822,0.288732895522148,0,0.190254152234598,0,0.858486162094873,0,0,0,0,0,0.141775097242386,0,0.290633938513962,0.766765358330422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.07333828582095,0.129271715757778,0,0,0,0,0.514414748524284,0,0.532844358032199,0,0,0,0,0,0.791951872933429,1.50719688529793,0,0.399891964728228,0,0,0,0,0,0,0,0.821905290201534,0.358121926479791,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.623912584592421,0.535286966391485,0.315404830067869,0.468565659970853,0.300946099727719,0,1.03473071292505,0,0.184369168541703,0.260650843404249,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164254312027618,0,0,0.966875596732978,0.802025881213139,0.460404944679482,0.803701137152247,0.546273504020151,0.786746489756545,0,0.308061348417659,1.56869953835371,0,0.73886140225013,0,0.170093705276516,0.215915916102139,0,0.812839312631559,0.501689773854853,0.254876273045038,0,0.671624264166535,0,0,1.02580050046556,0.656029291399411,0.325378394664303,0.9273691048295,0.915694648183434,0.742585499285292,0,0,0,0.096670718292122,0,0.15350367472613,0.275673144969061,0.322260734604821,0.435050081742686,0,0.178064071293475,0.165284915360978,0.384380134730212,0.510450849978337,0.2023155617111,0,0,0,0,0,0,0,0,0,0,0.38126038784765,0,0,0.318203247925937,0,0.179872457583315,0,0,0.202182481573316,0,0.421258456238981,0,0,0,0.409499734223957,0.282810863907425,0,0,0,0,0.578775534266688,0,0,0,0,0,0.0982490410131212,0,0.354761064070598,0.211107635297664,0,0.379473173765715,0,0.384888450902048,0.670302275535787,0,0.564862804660675,0.43050537267123,0,0.443430153536676,0,0,0,0,0,0,0,0,0,0,0,0.490080431962063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.851692475380653,0,0.614481528616916,0.894704431569664,0.667396566847634,0,0,0,0,0,0,0,1.75809815126273,0,0,0.284136146806413,0,0,0,0,0.281338832821026,2.33748280548102,0,0.63337622438398,0.398495976502139,0.828851746593443,0,0,0,0.311039587661807,0.449341755736634,0,0,0.887790650732402,0,0,0,0.278304294485554,0,1.04171104434093,0,1.44999915086959,2.61724931056649,0,0.236387681767936,2.75794698593172,0.874813840149763,1.56262495439963,0,0.241192877250816,0,0.110579259931225,0,0.219385397153973,0.435753854075961,0.697118721393016,2.23155749661011,0.91153644677601,0,0,0,0.31900115973192,0,0,0,0.31396051279005,0,0,0,0,0,0,3.37596903244843,0.326465616318295,1.13082457147153,0,1.99052386215701,0.176915129006678,0.611030144933625,0,0,0,0.404406797884062,1.60515529459758,0,0,0.19566461893209,0.242780379534093,0.789168805698781,0,0.61214552326098,0.758238955541855,1.65355761355942,1.34794648816421,0,0.992975867626496,0.627865836814451,0,0.569219092059585,0,1.04135843001079,0.489961987071888,1.21882889212564,0.873633341210151,0,0.677294319023596,0.877071805034227,0.985385484638511,0.775912131907355,0,0.677942222341597,0.274083849293502,0.19871461170299,0.189932387867636,0.195551382734803,2.32460578729448,0.426905989478705,0.599428828746391,1.87317542300338,0.343609788497747,0,0.14405479798815,0.372757606696298,0.235694034616795,0.543616824294456,0,0.203996435272644,0,0.600420288709789,0.136905378891993,2.55493176133945,0.859530882839914,4.46908502274835,0,0.916641696046735,0,0.798716001995964,0.429226048136571,0.223171457441873,0.940568614814168,0,0,0,0,0,0.0984274815147488,0,0,0,0,0,0,0,0,0.364497339948148,0,0.157611414598396,0.104909176269996,0.105600336519406,0.717149357331379,1.15149118391667,0,0.662091970365432,0,1.08599920350743,0.864221491201268,0.653174720218818,1.19730191562487,0,0.34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| ||
|short_description=p6@LAMA3 | |short_description=p6@LAMA3 | ||
}} | }} |
Latest revision as of 23:55, 18 September 2015
Short description: | p6@LAMA3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_LAMA3_5end |
Coexpression cluster: | C96_non_acute_tonsil_spleen_Burkitt_lymphoma_appendix |
Association with transcript: | -111bp_to_ENST00000313654, ENST00000399516, ENST00000416669, ENST00000538801, NM_001127717, NM_198129, uc002kuq.2, uc002kur.2, uc010dlv.1_5end |
EntrezGene: | LAMA3 |
HGNC: | 6483 |
UniProt: | Q16787Q6VU67F5GWM0F5H8G3Q566Q1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data