FFCP PHASE1:Hg19::chr18:21269556..21269569,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3909 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6483 | |||
|TSSclassifier=strong | |||
|UniProt=Q16787,Q6VU67,F5GWM0,F5H8G3,Q566Q1 | |||
|association_with_transcript=0bp_to_ENST00000313654,ENST00000399516,ENST00000416669,ENST00000538801,NM_001127717,NM_198129,uc002kuq.2,uc002kur.2,uc010dlv.1_5end | |||
|cluster_id=chr18:21269556..21269569,+ | |||
|description=CAGE_peak_7_at_LAMA3_5end | |||
|id=chr18:21269556..21269569,+ | |||
|ontology_enrichment_celltype=CL:0002076!1.24e-12!43;CL:0000066!2.97e-11!254;CL:0000223!6.75e-09!59;CL:0002368!2.43e-07!13 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0005795;3.91e-12;10 | |||
|ontology_enrichment_disease=DOID:305!1.10e-09!106;DOID:0050687!7.55e-07!143 | |||
|ontology_enrichment_disease_v019=DOID:1749;2.32e-08;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,3.03e-08,14 | |||
|ontology_enrichment_uberon=UBERON:0004119!3.70e-13!169;UBERON:0000925!3.70e-13!169;UBERON:0006595!3.70e-13!169;UBERON:0000062!5.51e-13!511;UBERON:0007023!1.34e-12!115;UBERON:0000161!2.41e-12!35;UBERON:0001007!6.41e-12!155;UBERON:0001555!6.41e-12!155;UBERON:0007026!6.41e-12!155;UBERON:0005156!9.90e-12!59;UBERON:0000990!9.90e-12!59;UBERON:0000064!2.67e-11!219;UBERON:0000481!9.80e-11!347;UBERON:0001004!3.57e-10!72;UBERON:0000077!7.58e-10!130;UBERON:0005157!9.55e-10!51;UBERON:0000162!1.01e-09!14;UBERON:0001353!1.01e-09!14;UBERON:0000163!1.01e-09!14;UBERON:0006866!1.01e-09!14;UBERON:0000164!1.01e-09!14;UBERON:0000931!1.01e-09!14;UBERON:0003064!3.04e-09!37;UBERON:0004921!4.48e-09!129;UBERON:0004185!4.48e-09!129;UBERON:0000468!9.74e-09!659;UBERON:0004122!9.86e-09!15;UBERON:0002050!1.51e-08!605;UBERON:0005423!1.51e-08!605;UBERON:0000467!2.28e-08!625;UBERON:0000480!2.93e-08!626;UBERON:0000923!3.20e-08!604;UBERON:0005291!3.20e-08!604;UBERON:0006598!3.20e-08!604;UBERON:0002532!3.20e-08!604;UBERON:0002367!4.09e-08!11;UBERON:0010147!4.09e-08!11;UBERON:0009846!4.09e-08!11;UBERON:0003353!4.09e-08!11;UBERON:0004902!4.09e-08!11;UBERON:0003820!4.09e-08!11;UBERON:0009847!4.09e-08!11;UBERON:0000922!4.90e-08!612;UBERON:0001046!6.32e-08!19;UBERON:0000065!7.71e-08!53;UBERON:0003134!1.20e-07!37;UBERON:0000474!1.20e-07!37;UBERON:0004175!1.46e-07!25;UBERON:0005153!1.64e-07!37;UBERON:0003937!3.99e-07!12;UBERON:0005399!3.99e-07!12;UBERON:0003975!4.25e-07!22;UBERON:0005795!4.34e-07!22;UBERON:0001008!4.74e-07!45;UBERON:0003100!7.09e-07!41;UBERON:0000477!7.67e-07!286;UBERON:0005911!8.79e-07!82;UBERON:0003133!9.49e-07!48 | |||
|ontology_enrichment_uberon_v019=UBERON:0003975;1.90e-10;18!UBERON:0000995;7.00e-09;17!UBERON:0004175;1.05e-08;21!UBERON:0000474;2.77e-08;37!UBERON:0003134;3.50e-08;33 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003975,2.47e-10,22;UBERON:0005795,2.58e-10,22;UBERON:0005156,2.99e-10,59;UBERON:0000990,2.99e-10,59;UBERON:0003134,2.78e-09,37;UBERON:0000474,2.78e-09,37;UBERON:0000995,6.62e-09,21;UBERON:0004175,7.63e-09,25;UBERON:0005153,2.64e-08,37;UBERON:0003100,4.29e-08,41;UBERON:0005157,3.84e-07,47 | |||
|phase1_expression=0,0,0,0,0,0,0,0.631719873426831,0,4.42321085702716,6.97801167972428,0.218441372130172,0,0,0.331397375727916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.919421224478927,1.204823675113,1.47901604066715,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236482229888585,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.57174890597255,0.728590576585084,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258416759169329,0.71153252537342,0,0.402829317109147,0,0,1.10298924103761,0,0,0,0.112611480483322,0,0,0,0,0,0.436094052142534,0,0,0.397227542439656,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117434498643765,0,0,0.204154171254893,0,0.206651562351531,0,0.247266929278557,0,0,0,0,0,0,0,1.35214253015937,0.113432183160021,0,0,0,0,0,0,0,0,0,0,0,2.58633690910099,0,0.10075209822764,0,0.193260853163297,0,0.573609190778008,0.121973706129595,0,0,0,0,0,0,0,0,0,0,0.118306800039844,0,0,0.441175890929576,0.435758888184812,0.474541238222193,0.269662616320329,0,0.769494313892781,0,0,0,0,0,0,0,0,0.491953754172454,0,0,0,0.100528972411631,0.0925884451585296,0.325808305310325,2.07986957055916,0,0,0,0.144366447761074,0,0,0,0,0,0,0,0,0.16798212819886,0,0,0.581267877027924,0,0,0,0.207328115540772,0,0,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0.266422179016099,0.142977993658148,0,0,0,0.355391948742546,0,2.1100756394171,2.61460037580088,3.09916272664377,0,0,0,0,1.14861935834114,0,0.289562613335158,0.821905290201534,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0.415941723061614,0,0.315404830067869,0.702848489956279,0,0,0,0,0,0.781952530212746,0,0,0,0,0,0.606255142892519,0,0.30239029332968,0,0,0,0,0,0,0,0,0,0.164254312027618,0,0,0.362578348774867,1.80455823272956,1.93370076765382,0.803701137152247,0.182091168006717,2.22911505431021,0.451199612907412,0.15403067420883,0,1.46139224653261,0.105551628892876,0,0.170093705276516,0.215915916102139,0,0.270946437543853,0.501689773854853,0,0,0.223874754722178,0,0,0.769350375349168,0,0,1.33953315142039,0,0,0,0,0,0.096670718292122,0,0.15350367472613,0,0.214840489736547,0.435050081742686,0,0,0.495854746082934,0.768760269460425,0.510450849978337,0.50578890427775,0,0,0,0,0,0,0,0,0,0.316379424718726,0,0,0,0,0,0,0,0,0.202182481573316,0,0,0,0,0,0.545999645631943,0.565621727814851,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211107635297664,0.658589785919804,0.75894634753143,0,0.288666338176536,0.670302275535787,2.17781969722645,1.60044461320525,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.17206543417515,0,0,0,2.3874448473769,0.593929361665277,0.921482106297696,0,0.422008249231538,1.8922479853894,0,0,1.19548792950642,0.276283915531148,0,0,0,0.311039587661807,0.359473404589307,0,0,0.493217028184668,0,0,0,0.0927680981618513,0,0.7812832832557,0,1.44999915086959,2.61724931056649,0.254253650292766,0,0,0,0.173624994933292,0,0.241192877250816,1.52581736317083,0.110579259931225,0,0,0,4.1827123283581,1.92375646259493,0.455768223388005,0,0,0,0.957003479195758,0,0.533034776018635,0,0,0,0,0,0,0,0,0.843992258112108,0.489698424477443,0.706765357169704,0,0,0.176915129006678,1.22206028986725,0,0,0,0.337005664903385,2.40773294189637,0,0,0.19566461893209,0,0.789168805698781,1.20990716048664,0,0.695052375913368,0.450970258243478,0.622129148383483,0,0,0,0,0.284609546029793,0,1.38847790668105,1.07791637155815,1.13176968554523,0.698906672968121,0,0.580537987734511,0.877071805034227,0.656923656425674,0.290967049465258,0,0,0.137041924646751,0,0.379864775735272,0.195551382734803,0.160317640503067,0.426905989478705,0.599428828746391,0.288180834308212,0,0,0.288109595976299,0.372757606696298,0.235694034616795,0,0,0.203996435272644,0.288950589901519,1.20084057741958,0.136905378891993,0,0.429765441419957,0.525774708558629,0.279282401272254,0.229160424011684,0.717873024576814,2.39614800598789,0,0.223171457441873,0.268733889946905,0,0,0,0,0,0.0984274815147488,0,0,0.544813624446302,0,0,0,0.2249738915515,2.32140586367385,0.0607495566580247,4.02521625119119,0.0788057072991982,0,0,0.179287339332845,2.1110671705139,1.42939065274673,0,0,2.71499800876856,1.72844298240254,0.326587360109409,0,0,0,0.113312091520126,0,0,0,0.39669780522807,0,0,4.27149650270779,5.03053776318931,9.1132592176383,0,0,0,1.27668251554036,0,0.2506898940227,0,0,0,0,0.244052529803926,0.1251909307065,1.14681839138014,0.332787154610557,0.310482014706917,0,0,0,0,0,0.936669811613763,0,0,0,0,1.13641803165053,0.754703705257725,0.889811221596536,0.228840068396924,0.453692771289717,0,0,0.159296767163702,0,0,0,0,0,0,1.52322084867518,0.406870733204662,0,0.107410557042488,0.464033759878494,0,0,0,0,0,1.34833881285112,0.857766365499703,0,0.226705925512272,0.463044948647668,0,0.358177682162975,1.23520578864389,0.219284049578707,1.76689145945881,0.964570191354574,0.168942440653073,0,0,0.303859956177382,0.553033744606923,0,0,0,0.327609848846413,0.983091635014877,1.47918486351039,0,0,0,0,2.02516545277025,0.839277046316667,0.622077260032973,0,0,0,0.109209638192014,0,0,0,0,0,8.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| |||
|short_description=p7@LAMA3 | |||
}} |
Latest revision as of 23:58, 18 September 2015
Short description: | p7@LAMA3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_LAMA3_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000313654, ENST00000399516, ENST00000416669, ENST00000538801, NM_001127717, NM_198129, uc002kuq.2, uc002kur.2, uc010dlv.1_5end |
EntrezGene: | LAMA3 |
HGNC: | 6483 |
UniProt: | Q16787Q6VU67F5GWM0F5H8G3Q566Q1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
internal female genitalia | 2.47e-10 | 22 |
embryonic uterus | 2.58e-10 | 22 |
reproductive structure | 2.99e-10 | 59 |
reproductive system | 2.99e-10 | 59 |
female reproductive organ | 2.78e-09 | 37 |
female reproductive system | 2.78e-09 | 37 |
uterus | 6.62e-09 | 21 |
internal genitalia | 7.63e-09 | 25 |
epithelial bud | 2.64e-08 | 37 |
female organism | 4.29e-08 | 41 |
epithelial fold | 3.84e-07 | 47 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 3.03e-08 | 14 |