FFCP PHASE1:Hg19::chr15:75074385..75074405,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1445 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2444 | |||
|TSSclassifier=strong | |||
|UniProt=P41240,A8K3B6,B2R6Q4 | |||
|association_with_transcript=-19bp_to_ENST00000220003,ENST00000439220,NM_001127190,NM_004383,uc002ays.2,uc010bka.2,uc010bkb.1_5end | |||
|cluster_id=chr15:75074385..75074405,+ | |||
|description=CAGE_peak_3_at_CSK_5end | |||
|id=chr15:75074385..75074405,+ | |||
|ontology_enrichment_celltype=CL:0000221!1.42e-09!71;CL:0000133!1.22e-08!59;CL:0002321!3.03e-08!248;CL:0000220!4.83e-08!246;CL:0000066!3.40e-07!254 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,3.47e-09,72;CL:0000133,1.22e-08,59;CL:0002321,4.05e-08,250;CL:0000066,3.46e-07,253 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!2.95e-07!235;DOID:14566!3.49e-07!239 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:162,2.99e-07,235;DOID:14566,3.54e-07,239 | |||
|ontology_enrichment_uberon=UBERON:0000924!1.32e-10!173;UBERON:0006601!1.32e-10!173;UBERON:0000475!3.03e-10!365;UBERON:0004121!4.62e-10!169;UBERON:0000064!6.31e-09!219;UBERON:0000481!1.44e-07!347;UBERON:0000073!2.86e-07!94;UBERON:0001016!2.86e-07!94 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,3.36e-10,171;UBERON:0000924,3.36e-10,171;UBERON:0006601,3.36e-10,171;UBERON:0011216,3.37e-08,223;UBERON:0001016,1.06e-07,89;UBERON:0010371,6.54e-07,104 | |||
|phase1_expression=3.08853244759946,4.92431204949261,2.25527046553554,3.00219895059391,3.5756887554183,2.61701557230111,5.06599756336621,5.68547886084148,7.57438321779532,9.33788958705734,20.2362338712004,4.80571018686379,6.06664049925443,2.35156070624089,4.63956326019082,4.03395087871065,1.80808358407193,1.46062018077475,4.39139518911456,9.72656358806625,10.6080359447012,11.2843699732112,5.43848375549008,6.84372125364421,8.28581421325698,12.1497315139242,14.0392007959407,13.9318082925212,1.18009283054671,1.53531759238885,4.18003532953405,11.0330546937471,7.53014796945625,7.02532619316897,2.55641761914995,4.83375390457233,2.34880351467878,1.66198622559563,3.81034450193269,3.90619567288533,1.34349284543955,1.6194683300949,2.31818010870768,2.76256653681173,1.88937971844405,4.60909716256851,2.78914844286822,2.46700732813095,2.78735733805593,1.43846196161075,1.0246428261164,1.18241114944293,1.72372840368309,1.29096936716765,1.35426486594342,3.01187743268168,2.72906150057846,0.224723484445085,1.53041946185451,2.56743221660875,1.27867425159808,3.62836430205388,1.39624560335142,2.13112375266347,2.32167390902867,3.40431134814684,0.622822248995575,1.25624332628372,3.65038042894141,1.3031330682307,2.42159801053347,0.736555271975129,0.632924774881769,4.22510572623884,3.4016687994407,2.72556239160889,1.57260083605093,1.95229960693958,2.25015821375912,2.28010194992999,3.38158351238453,5.66258876670365,3.51992488922645,1.63841583378639,2.66852776159066,2.98711155796555,1.20118796110804,1.72425731986345,2.64417949113945,2.86216126360609,2.84606484554724,2.34894875748376,3.82273228125229,2.64342657158052,2.24203425192614,2.37045676297569,1.180258620683,3.93010762749165,3.08402248499264,2.00623794468814,0.651844533267181,1.4203434172042,1.94826728407911,2.78526142212934,2.06224135232386,1.99380505125259,2.43723477388514,5.37983542847836,5.07231455483525,3.78207180588455,2.76350017785848,3.76744011455568,2.07601188426885,2.1403266247177,4.18142095219907,3.05935225283429,3.06576394881537,1.71813722741315,2.27717722817553,2.22995790026868,0.651083453856419,1.90090408889675,2.10805166708882,3.19966527886046,2.49861453104692,2.8413270245282,0,1.81446068902259,1.60464117470104,3.47578569318718,2.43806866313962,0.670700859703636,3.70801429346238,3.97583067623023,4.01070328508712,4.34539556882471,3.9764297352555,4.86634870302636,5.57755421268,3.1042115644759,5.35792192728069,5.17367348215965,11.6574492253614,6.67411997011973,0.97364218096405,2.43781632218974,2.39324328933957,3.81584998888547,4.0039643754609,2.22874500797739,2.98143611050058,2.58070378531837,5.55424802572151,1.69592382577203,4.61449379830897,4.95212475492121,5.01587919688345,1.03366703667732,0.71153252537342,1.33888245105868,4.43112248820062,2.28081631715554,3.66093086322254,4.04429388380456,3.24056779152704,1.7859945656816,3.59246996201872,4.27923625836624,4.5994991239765,6.6448596169769,4.03043836646896,3.9534125230819,0,10.9023513035634,4.96971951695318,2.91250176828533,3.83986624358335,3.72887606973458,7.09336764396714,7.8494864019923,7.47242970107935,9.12669929143492,5.91300967259556,2.55950276932407,2.61539044981534,3.32986340818849,4.03323147135999,13.5906430463602,7.80400192075801,5.70471821544449,4.93180645820944,5.04968344168189,5.50368010851647,5.19667984798319,3.26646674007829,4.54486974053541,6.09622108937016,7.12801714369232,5.19260551484969,18.2032272387605,12.2165084108761,3.70339450698946,6.00568895385428,7.48073111807294,8.34057479673592,3.0648779579902,6.00952235626387,3.28953331164061,3.94657198515496,4.69826255400848,6.35795703478686,2.70081986475962,3.19462840639161,2.83404594050192,3.53622027030021,3.71307930930786,3.89748020644795,3.02920529092937,3.12969655383818,2.42469085228218,2.84007674013291,3.82857973265033,6.78242369241951,3.67195621010264,5.18217629122586,8.60413786167011,7.80631719229411,4.90360142789496,6.15827897208447,6.21966330092223,5.55105871926382,5.10968302706162,3.12899064659632,7.71889125831462,5.52539685409922,3.71494342425583,2.88751792667834,3.31259040111563,5.90046415273356,3.13314338848527,5.4044046638873,4.57546832594053,7.59265981155509,4.71909578560575,4.12065076763227,3.46272441251751,2.95262181849859,5.60967095213783,7.4083322039652,5.88034845542168,6.33775174109154,2.94848165003288,2.36315962672562,5.29755719297581,3.56666471775029,3.43135620597051,5.92651541206578,17.9842805212191,8.04231779293047,5.46271826435325,16.9420318761369,12.4792174233549,4.3299402607582,9.15850199303107,5.75302601755526,4.18662698507114,4.62985512576611,0.951270761172991,15.0138835612262,13.735778593518,2.46217006087397,3.51006397708857,4.60756603095058,2.81201501960331,3.35964256397719,3.40260233381728,6.71688920271362,6.68458058582112,8.43441894163465,1.47798971368783,6.16339038092582,5.59785911960085,5.33243827642757,4.16600030307054,5.65131259200304,9.54971063895694,10.5495702489042,6.84289784090821,5.75833959138612,2.70308752059526,5.43070221998099,7.17638939810309,6.5394010324992,3.44689943358465,3.61960804121778,21.4593867511129,10.143633030672,7.97814349754611,10.4007436911366,10.2882949704857,5.67396528093113,10.656887160644,3.14551586047925,6.51145926469732,4.93944202068461,2.93162565864362,2.84313558994037,4.75171123760058,2.41151501647669,2.61460037580088,5.49851451501314,6.08118903205952,4.01805673145701,4.21667878966063,4.55287225434007,5.7430967917057,5.70547620162874,2.46128221334885,3.6985738059069,3.9393411912777,4.03506518376698,1.37921532141349,1.50939302401662,3.7219480521127,6.35236560556159,7.8083912314573,6.95959931499926,10.553524716064,11.4828975297569,3.74503511973591,0,4.55857064779639,5.03035116048474,6.00204625271613,7.86668568729233,7.27898015357825,6.24501460790066,7.09660867652706,6.67706065458465,5.41702979509894,6.82222512167955,10.3473071292505,8.63493278096067,7.00602840458472,4.86548241021264,11.1606659753762,9.60801586670397,2.27444828735176,3.23571301227925,3.20182673410333,6.36567900037145,13.3148351608398,8.16453791990137,2.48107807818777,2.60885354589706,6.17452207752762,2.94720043288112,4.09365799253363,7.39928037260594,4.45254199334973,6.47680713971153,7.63515418846446,5.66677376495283,5.71179872101983,4.88083589531829,3.62578348774867,7.41873940122154,7.09023614806402,3.67406234126742,4.91646153618136,7.6052160676466,13.0847887743149,4.1588282036384,28.2365916903668,18.9980992049239,4.43316841350078,1.13733384070897,3.74206151608334,5.61381381865562,15.4227252690289,10.5669110642103,16.5557625372102,7.39141191830611,8.31076008928724,8.05949116999842,1.53481913652154,2.0914836081992,5.12900250232778,6.88830755969382,2.60302715731442,2.7821073144885,3.93748698718877,2.0627374980147,10.3367796839311,12.3511446746939,1.6068392984416,8.41035249141461,2.92692372517824,3.37708084397485,3.99726060205139,2.79292636657511,4.35050081742686,4.51701125305335,6.32127453091835,5.12383237619032,8.64855303142978,6.38063562472921,7.48567578331069,4.18360994367557,2.83331112147576,4.8792608911242,5.85263802334569,7.98459045475533,4.34966496037536,9.63685939340384,2.71937284809783,4.46590043231601,2.84741482246853,3.0500831027812,14.586174104746,4.70732886837312,8.27328444607436,5.49464048139461,3.23770423649967,5.76527762445715,5.41937050790158,6.06547444719948,6.34041284692033,5.47635993110675,12.1908434772398,5.11798328225697,4.22600587027022,5.86949619054339,5.23200098228737,6.78048699721457,7.71911480964574,4.64407282668854,4.38450885253763,6.36653087693356,8.52663177660623,5.2756698010303,5.88664646389525,5.63391205064483,7.31397896240663,5.30544821470854,7.49009208110625,7.09522128141196,4.01104507065562,4.28083360847872,11.0047220392057,17.8466707324941,7.2166584544134,15.4169523373231,13.0669181833587,3.01260162485693,12.4846558074657,13.47771805341,7.09488245658681,4.36474460393223,2.53723804616085,3.0585488285695,3.41788312304498,1.90585420366231,2.05681136543097,2.59389324477087,3.24018862342869,2.37937552888281,7.69133312117807,9.62479855263359,3.18552280775341,3.90186667764009,3.46246111143468,8.82158857520335,6.37705090915289,7.1848573715814,2.10655907145603,2.32840940996271,3.24621940274555,2.52717460302113,10.9552645935932,6.26719583092093,2.50634477090067,2.70866844482565,4.49646610290359,7.26478945887771,4.68430861459359,2.40453741329035,5.22309299324379,7.15763545255731,6.34026738505252,6.44780714826733,12.2498716513907,13.5396138842484,3.51592382018778,7.32758329595204,8.45922030527097,9.16988648000277,1.61158997199083,17.8399966971785,8.2468104365334,5.39858678932185,4.53614521001611,5.93929361665277,0.921482106297696,6.95903353436409,5.34543782359948,2.44879151050393,6.0977433463901,5.06700979507184,4.18420775327246,5.8019622261541,4.03092396566842,5.11343412510774,11.2007172969573,2.79935628895627,4.31368085507169,5.72867758961949,3.5810065915881,1.7755813014648,2.3948309234694,6.66821940867821,5.81599647657131,6.30823067500589,29.9420697001791,6.77112178821606,4.81029999979076,2.17499872630438,10.3552037939805,6.35634125731916,12.7649348154686,8.27384095779515,3.79085997398231,7.11862479226498,3.54296554325536,5.06505042226713,9.15490417902499,7.29823115546083,5.91095237907095,2.63262476584767,3.05027697853172,2.64905114129346,3.84751292518985,1.48124672601102,12.6810147413433,2.96200226552248,5.64966333994442,1.5950057986596,6.22863635132664,0.533034776018635,5.10966490978682,6.75015102498606,1.82832850090172,10.8285917096247,8.62675150998054,6.88068506600955,3.60532092175952,4.13235105348985,3.58696709697646,3.4278889713421,4.94735750018793,7.57360239097319,3.98104772431402,4.42287822516696,4.27721101453538,2.37216902944498,2.47127877893006,5.01225357626186,6.94231669700974,2.40773294189637,3.98249557733077,2.73682183823499,6.06560318689478,5.34116834975004,3.15667522279512,3.62972148145992,11.0186194186976,5.11811294990753,5.41164309892173,8.39874350317702,8.64050034519341,6.95083107338548,7.22045712336618,8.36307008410712,1.70765727617876,6.79505897764379,9.02510639342681,8.03537658797897,3.91766429611812,2.09672001890436,7.22341336380789,4.93457289574334,7.01657444027381,7.1440447636292,5.62536295632833,7.41351464208602,4.97157629717171,5.61871891051679,7.55115524471361,6.39439039154375,4.49768180290047,2.24444696704294,4.0556069000477,0.999048047910651,4.03453168031497,6.75765917378902,4.63306494227304,4.46569873763264,5.21860649374817,12.2560898000734,7.20292292190154,5.54395085455366,4.99791266417977,7.51271533743949,8.40588404193705,4.65478288232776,5.10986352267889,4.29765441419957,11.8299309425692,0.279282401272254,2.52076466412852,1.43574604915363,3.39454300848285,3.86303443322914,1.33902874465124,4.0981918216903,5.40449825313605,10.4846354574708,7.40561913687902,8.07675412135431,8.69505715718985,6.00407637239968,16.0032597604333,3.97614844904652,6.1291532750209,5.62636019627567,4.53880140770872,6.23160507043778,1.799791132412,2.32140586367385,6.31795389243457,6.70869375198532,2.91581117007033,5.08809504909482,2.11200673038813,3.40645944732405,3.26255835443057,5.71756261098694,3.97255182219259,8.89939881791624,1.62899880526114,1.72844298240254,4.89881040164114,7.18381149374925,4.4329961204643,5.28202867534807,7.81853431488867,4.83622371137672,6.62534444561107,8.14482625077768,3.43804764530994,9.58086292152245,9.16259529011673,2.77647272676006,2.35806457649499,2.07119527673598,5.95399226174341,6.32357222073422,12.7882228299941,2.55336503108073,1.08803560673895,1.5041393641362,0.612691153526923,1.63936315354902,16.4906801062746,6.2024772597689,6.83347083450994,5.38321002037949,2.86704597845036,4.54809111301094,7.5136647559074,4.70385358783185,7.99874610957482,3.4879297034579,4.85291067026445,3.52898729547258,7.49335849291011,6.08668320165466,3.13435086062435,5.84283274618061,3.32883516901568,3.59865710022669,3.77351852628863,1.77962244319307,4.11912123114462,4.68815863666041,3.88593001456951,3.25281329977195,4.93819978207477,5.39763734596325,6.05525531817412,3.31764966272684,2.12673371646396,3.65221543268214,4.50772826991655,7.61610424337591,2.03435366602331,3.09142720644351,3.7593694964871,2.32016879939247,4.37905477568478,4.80033317595784,3.09056134664514,6.06149079778654,10.0947918582921,8.09003287710674,4.28883182749851,4.69789725537381,4.53411851024545,3.70435958918134,3.91578727210348,5.01448755028165,5.86722749605847,5.26281718988897,4.94729608648467,5.98033518639836,4.73038833828603,6.91852100187456,6.56317649289277,4.86175929883811,5.80685431837269,1.94860308839388,1.32864840313363,3.10774249086104,1.96565909307848,4.66968526632067,7.18461219419332,8.59945802176198,5.86804513317775,3.2720846135555,9.64777121063621,6.81192015931811,5.59518030877778,15.5519315008243,8.31313413473736,6.25383906100754,5.34704202310048,5.78811082417674,6.61956866820698,4.88922316233871,6.69253126998612,25.139021308796,7.31410006502863,0.315446980005013,2.40171224485641,5.29013915536026,3.062454773532,5.00987955752384,9.91876034279095,6.8642559394575,3.28186182785208,10.0828678488687,9.47454358759785,5.32869630585109,0,11.581430783121,8.37585035768957,2.20114318226015,5.66075764136657,4.57658514560601,6.21323933454091,6.56423532983707,4.06135773085989,4.43751151147744,3.90757005616546,5.50004058410987,2.12903492763126,5.91424344868181,6.14592020027391,5.46754669029693,3.10030194751776,8.87821342714695,6.56369770821863,1.64477330057155,2.48105589194647,7.73833475182331,6.64364623725895,2.67850917939143,7.0619581665953,4.85572483389305,5.00856820972855,3.01588058552972,8.41208109157188,4.11571222649804,7.68057982638198,7.16923231835055,4.13678443093889,4.89418168325104,3.61068227112365,5.65616123697607,5.32517110296199,3.65263488203798,4.10262423315381,2.38875843943525,5.93255316666248,4.10835390505089,4.76589844009314,6.95433089210318,8.01711364730253,4.35153944742377,4.26796192734875,9.67763526539729,2.58136415292167,10.0582200620981,9.37347452350735,1.69354820076372,2.52017555398455,4.34288939930048,3.82215575590973,3.35566295393377,10.10947406237,4.14520944939716,1.29485767437579,1.23195368227496,2.3196288626764,3.39997695141398,11.6969731731053,5.57062170451831,12.3676894408671,6.66381884029864,6.70637152147118,6.64236511693364,5.55653938377201,7.86814417814246,1.88126918544609,0.980593287015622,7.77732605435366,4.3187862765288,5.64388160621463,5.9171801861676,6.28730324344923,3.94732455515385,3.6740996144939,8.69488056546882,2.49975514047921,3.17605384544123,1.84555143385087,3.65168194123259,3.21110498383179,3.58348957878628,8.04634967185241,9.17885117577348,6.98161104544604,2.645134202577,5.57992527250127,2.77305377178851,5.19151874548547,6.68682051625918,11.9099473440428,15.5839156244067,3.97756435993729,6.14600032110789,3.12442658418473,4.011320628678,5.60762366814972,7.502995644373,4.1458471972939,3.93045384275202,1.27940389140589,4.52322419781107,16.7285276475256,9.62158071585798,5.15806567870822,2.22765053973577,4.24446096812261,3.04803447055746,1.71116650542641,6.39844503638581,4.2316101181679,3.32660356546013,6.83787456332186,4.58927587274176,11.5843369372164,5.12003652007545,4.69281884806909,2.44482888365733,4.06896178315738,2.66302709674205,2.01273793591026,10.8993287383099 | |||
|short_description=p3@CSK | |||
}} |
Latest revision as of 01:48, 19 September 2015
Short description: | p3@CSK |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_CSK_5end |
Coexpression cluster: | NA |
Association with transcript: | -19bp_to_ENST00000220003, ENST00000439220, NM_001127190, NM_004383, uc002ays.2, uc010bka.2, uc010bkb.1_5end |
EntrezGene: | CSK |
HGNC: | 2444 |
UniProt: | P41240A8K3B6B2R6Q4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 3.47e-09 | 72 |
neurectodermal cell | 1.22e-08 | 59 |
embryonic cell | 4.05e-08 | 250 |
epithelial cell | 3.46e-07 | 253 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 3.36e-10 | 171 |
ectoderm | 3.36e-10 | 171 |
presumptive ectoderm | 3.36e-10 | 171 |
organ system subdivision | 3.37e-08 | 223 |
nervous system | 1.06e-07 | 89 |
ecto-epithelium | 6.54e-07 | 104 |
Ontology term | p-value | n |
---|---|---|
cancer | 2.99e-07 | 235 |
disease of cellular proliferation | 3.54e-07 | 239 |