FFCP PHASE1:Hg19::chr7:5566911..5566936,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=60 | |EntrezGene=60 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=132 | |HGNC=132 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=386bp_to_BC009636_5end | |association_with_transcript=386bp_to_BC009636_5end | ||
|cluster_id=chr7:5566911..5566936,- | |||
|description=CAGE_peak_9_at_ACTB_5end | |description=CAGE_peak_9_at_ACTB_5end | ||
|id=chr7:5566911..5566936,- | |id=chr7:5566911..5566936,- | ||
|ontology_enrichment_celltype=CL:0000393!1.87e-09!60;CL:0000211!1.87e-09!60;CL:0000055!2.31e-09!180;CL:0000222!3.77e-08!119;CL:0000183!3.96e-08!59;CL:0002371!1.03e-07!591;CL:0000187!2.55e-07!54;CL:0000144!4.51e-07!625;CL:0000680!5.95e-07!57;CL:0000056!5.95e-07!57;CL:0000355!5.95e-07!57;CL:0000192!7.51e-07!42;CL:0000514!7.51e-07!42 | |ontology_enrichment_celltype=CL:0000393!1.87e-09!60;CL:0000211!1.87e-09!60;CL:0000055!2.31e-09!180;CL:0000222!3.77e-08!119;CL:0000183!3.96e-08!59;CL:0002371!1.03e-07!591;CL:0000187!2.55e-07!54;CL:0000144!4.51e-07!625;CL:0000680!5.95e-07!57;CL:0000056!5.95e-07!57;CL:0000355!5.95e-07!57;CL:0000192!7.51e-07!42;CL:0000514!7.51e-07!42 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000393,4.79e-09,61;CL:0000211,4.79e-09,61;CL:0000222,3.47e-08,121;CL:0000187,5.85e-07,55;CL:0000723,6.65e-07,433 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004872!3.29e-08!84;UBERON:0000486!3.86e-08!82;UBERON:0000055!1.24e-07!69;UBERON:0001637!1.34e-07!42;UBERON:0003509!1.34e-07!42;UBERON:0004572!1.34e-07!42;UBERON:0001981!1.51e-07!60;UBERON:0007500!1.51e-07!60;UBERON:0004537!1.51e-07!60;UBERON:0006965!1.51e-07!60;UBERON:0004535!1.54e-07!110;UBERON:0003081!2.77e-07!216;UBERON:0002049!2.84e-07!79;UBERON:0007798!2.84e-07!79;UBERON:0004290!4.17e-07!70;UBERON:0001009!5.40e-07!113 | |ontology_enrichment_uberon=UBERON:0004872!3.29e-08!84;UBERON:0000486!3.86e-08!82;UBERON:0000055!1.24e-07!69;UBERON:0001637!1.34e-07!42;UBERON:0003509!1.34e-07!42;UBERON:0004572!1.34e-07!42;UBERON:0001981!1.51e-07!60;UBERON:0007500!1.51e-07!60;UBERON:0004537!1.51e-07!60;UBERON:0006965!1.51e-07!60;UBERON:0004535!1.54e-07!110;UBERON:0003081!2.77e-07!216;UBERON:0002049!2.84e-07!79;UBERON:0007798!2.84e-07!79;UBERON:0004290!4.17e-07!70;UBERON:0001009!5.40e-07!113 | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000926,4.46e-14,315;UBERON:0004120,4.46e-14,315;UBERON:0006603,4.46e-14,315;UBERON:0007503,1.26e-08,78;UBERON:0003081,3.50e-08,203;UBERON:0000486,7.74e-08,83;UBERON:0004872,8.62e-08,83;UBERON:0001637,1.30e-07,42;UBERON:0003509,1.30e-07,42;UBERON:0004572,1.30e-07,42;UBERON:0005256,2.51e-07,122;UBERON:0000055,2.99e-07,68;UBERON:0004535,3.33e-07,109;UBERON:0007524,3.75e-07,73;UBERON:0007500,3.78e-07,59;UBERON:0001981,3.78e-07,59;UBERON:0004537,3.78e-07,59;UBERON:0006965,3.78e-07,59;UBERON:0002049,6.45e-07,78;UBERON:0007798,6.45e-07,78;UBERON:0003077,7.68e-07,72;UBERON:0007285,7.68e-07,72;UBERON:0002329,8.18e-07,71;UBERON:0003059,8.18e-07,71;UBERON:0007282,8.18e-07,71;UBERON:0004290,8.18e-07,71;UBERON:0009618,8.18e-07,71 | |||
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| ||
|short_description=p9@ACTB | |short_description=p9@ACTB | ||
}} | }} |
Latest revision as of 01:51, 19 September 2015
Short description: | p9@ACTB |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_ACTB_5end |
Coexpression cluster: | NA |
Association with transcript: | 386bp_to_BC009636_5end |
EntrezGene: | ACTB |
HGNC: | 132 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
electrically responsive cell | 4.79e-09 | 61 |
electrically active cell | 4.79e-09 | 61 |
mesodermal cell | 3.47e-08 | 121 |
muscle cell | 5.85e-07 | 55 |
somatic stem cell | 6.65e-07 | 433 |
Ontology term | p-value | n |
---|---|---|
mesoderm | 4.46e-14 | 315 |
mesoderm-derived structure | 4.46e-14 | 315 |
presumptive mesoderm | 4.46e-14 | 315 |
epithelial vesicle | 1.26e-08 | 78 |
lateral plate mesoderm | 3.50e-08 | 203 |
multilaminar epithelium | 7.74e-08 | 83 |
splanchnic layer of lateral plate mesoderm | 8.62e-08 | 83 |
artery | 1.30e-07 | 42 |
arterial blood vessel | 1.30e-07 | 42 |
arterial system | 1.30e-07 | 42 |
trunk mesenchyme | 2.51e-07 | 122 |
vessel | 2.99e-07 | 68 |
cardiovascular system | 3.33e-07 | 109 |
dense mesenchyme tissue | 3.75e-07 | 73 |
epithelial tube open at both ends | 3.78e-07 | 59 |
blood vessel | 3.78e-07 | 59 |
blood vasculature | 3.78e-07 | 59 |
vascular cord | 3.78e-07 | 59 |
vasculature | 6.45e-07 | 78 |
vascular system | 6.45e-07 | 78 |
paraxial mesoderm | 7.68e-07 | 72 |
presumptive paraxial mesoderm | 7.68e-07 | 72 |
somite | 8.18e-07 | 71 |
presomitic mesoderm | 8.18e-07 | 71 |
presumptive segmental plate | 8.18e-07 | 71 |
dermomyotome | 8.18e-07 | 71 |
trunk paraxial mesoderm | 8.18e-07 | 71 |