FFCP PHASE1:Hg19::chr7:5569195..5569233,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr7:5569195..5569233,- to FFCP PHASE1:Hg19::chr7:5569195..5569233,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=60 | |EntrezGene=60 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=132 | |HGNC=132 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_uc011jwi.1_5end | |||
|cluster_id=chr7:5569195..5569233,- | |||
|description=CAGE_peak_6_at_ACTB_5end | |||
|id=chr7:5569195..5569233,- | |||
|ontology_enrichment_celltype=CL:0002371!8.36e-11!591;CL:0000144!6.23e-10!625;CL:0000222!2.37e-07!119;CL:0000055!3.48e-07!180;CL:0000183!4.78e-07!59 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,9.40e-08,121 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003081!2.77e-13!216;UBERON:0001981!5.10e-10!60;UBERON:0007500!5.10e-10!60;UBERON:0004537!5.10e-10!60;UBERON:0006965!5.10e-10!60;UBERON:0004872!6.14e-10!84;UBERON:0002049!1.49e-09!79;UBERON:0007798!1.49e-09!79;UBERON:0003914!1.95e-09!118;UBERON:0000926!2.81e-09!448;UBERON:0004120!2.81e-09!448;UBERON:0006603!2.81e-09!448;UBERON:0000055!3.76e-09!69;UBERON:0004535!1.44e-08!110;UBERON:0001637!3.79e-08!42;UBERON:0003509!3.79e-08!42;UBERON:0004572!3.79e-08!42;UBERON:0001009!5.14e-08!113;UBERON:0004290!4.07e-07!70;UBERON:0000468!4.78e-07!659;UBERON:0000914!4.96e-07!83;UBERON:0002329!4.96e-07!83;UBERON:0003077!4.96e-07!83;UBERON:0003059!4.96e-07!83;UBERON:0007282!4.96e-07!83;UBERON:0009618!4.96e-07!83;UBERON:0007285!4.96e-07!83;UBERON:0005256!5.31e-07!143;UBERON:0002204!6.37e-07!167;UBERON:0000486!6.43e-07!82 | |||
|ontology_enrichment_uberon_v019=UBERON:0003914;9.65e-07;74 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000926,1.20e-17,315;UBERON:0004120,1.20e-17,315;UBERON:0006603,1.20e-17,315;UBERON:0003081,3.41e-13,203;UBERON:0004872,7.66e-10,83;UBERON:0007500,7.76e-10,59;UBERON:0001981,7.76e-10,59;UBERON:0004537,7.76e-10,59;UBERON:0006965,7.76e-10,59;UBERON:0003914,1.52e-09,117;UBERON:0007503,1.67e-09,78;UBERON:0002049,1.98e-09,78;UBERON:0007798,1.98e-09,78;UBERON:0000055,5.01e-09,68;UBERON:0004535,1.86e-08,109;UBERON:0001637,3.63e-08,42;UBERON:0003509,3.63e-08,42;UBERON:0004572,3.63e-08,42;UBERON:0001009,6.56e-08,112;UBERON:0002329,2.86e-07,71;UBERON:0003059,2.86e-07,71;UBERON:0007282,2.86e-07,71;UBERON:0004290,2.86e-07,71;UBERON:0009618,2.86e-07,71;UBERON:0007524,3.50e-07,73;UBERON:0002204,4.20e-07,167;UBERON:0000486,4.56e-07,83;UBERON:0003077,5.78e-07,72;UBERON:0007285,5.78e-07,72;UBERON:0000490,5.95e-07,148 | |||
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| ||
|short_description=p6@ACTB | |||
}} | }} |
Latest revision as of 02:10, 19 September 2015
Short description: | p6@ACTB |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_ACTB_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_uc011jwi.1_5end |
EntrezGene: | ACTB |
HGNC: | 132 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 9.40e-08 | 121 |
Ontology term | p-value | n |
---|---|---|
mesoderm | 1.20e-17 | 315 |
mesoderm-derived structure | 1.20e-17 | 315 |
presumptive mesoderm | 1.20e-17 | 315 |
lateral plate mesoderm | 3.41e-13 | 203 |
splanchnic layer of lateral plate mesoderm | 7.66e-10 | 83 |
epithelial tube open at both ends | 7.76e-10 | 59 |
blood vessel | 7.76e-10 | 59 |
blood vasculature | 7.76e-10 | 59 |
vascular cord | 7.76e-10 | 59 |
epithelial tube | 1.52e-09 | 117 |
epithelial vesicle | 1.67e-09 | 78 |
vasculature | 1.98e-09 | 78 |
vascular system | 1.98e-09 | 78 |
vessel | 5.01e-09 | 68 |
cardiovascular system | 1.86e-08 | 109 |
artery | 3.63e-08 | 42 |
arterial blood vessel | 3.63e-08 | 42 |
arterial system | 3.63e-08 | 42 |
circulatory system | 6.56e-08 | 112 |
somite | 2.86e-07 | 71 |
presomitic mesoderm | 2.86e-07 | 71 |
presumptive segmental plate | 2.86e-07 | 71 |
dermomyotome | 2.86e-07 | 71 |
trunk paraxial mesoderm | 2.86e-07 | 71 |
dense mesenchyme tissue | 3.50e-07 | 73 |
musculoskeletal system | 4.20e-07 | 167 |
multilaminar epithelium | 4.56e-07 | 83 |
paraxial mesoderm | 5.78e-07 | 72 |
presumptive paraxial mesoderm | 5.78e-07 | 72 |
unilaminar epithelium | 5.95e-07 | 148 |