FFCP PHASE1:Hg19::chr7:5570229..5570234,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr7:5570229..5570234,-
|short_description=p1@ACTB
|description=CAGE_peak_1_at_ACTB_5end
|association_with_transcript=0bp_to_ENST00000320713,ENST00000400179,ENS...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=60 | |EntrezGene=60 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=132 | |HGNC=132 | ||
|TSSclassifier=strong | |||
|UniProt=F5GYT4,B4DW52,G5E9R0,B4E335,P60709,Q1KLZ0 | |UniProt=F5GYT4,B4DW52,G5E9R0,B4E335,P60709,Q1KLZ0 | ||
|association_with_transcript=0bp_to_ENST00000320713,ENST00000400179,ENST00000425660,ENST00000445914,ENST00000462494,ENST00000473257,ENST00000484841,NM_001101,uc003soq.3,uc003sot.3,uc010ksy.2_5end | |||
|cluster_id=chr7:5570229..5570234,- | |||
|coexpression_cluster_id=C2155 | |||
|description=CAGE_peak_1_at_ACTB_5end | |||
|id=chr7:5570229..5570234,- | |||
|ontology_enrichment_celltype=CL:0002371!3.79e-37!591;CL:0000144!5.25e-35!625;CL:0000548!8.48e-27!679;CL:0000004!8.48e-27!679;CL:0000255!8.48e-27!679;CL:0000012!7.81e-26!682;CL:0000003!5.64e-23!722;CL:0000222!1.33e-16!119;CL:0000055!3.22e-15!180;CL:0000723!3.27e-15!436;CL:0000048!7.62e-15!430;CL:0000034!1.18e-14!444;CL:0000192!5.12e-14!42;CL:0000514!5.12e-14!42;CL:0000183!6.37e-14!59;CL:0000187!1.93e-12!54;CL:0000680!2.04e-12!57;CL:0000056!2.04e-12!57;CL:0000355!2.04e-12!57;CL:0000359!3.49e-12!32;CL:0000393!1.05e-11!60;CL:0000211!1.05e-11!60;CL:0002321!8.18e-11!248;CL:0000220!8.93e-11!246;CL:0000063!1.76e-10!578;CL:1000449!4.44e-07!16;CL:0000115!5.63e-07!35 | |||
|ontology_enrichment_celltype_v019=CL:0000359;1.57e-11;32!CL:0000192;4.73e-10;43!CL:1000449;2.07e-07;15!CL:0000187;4.29e-07;55 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,9.81e-17,121;CL:0000723,6.11e-16,433;CL:0000048,1.45e-15,427;CL:0000034,2.29e-15,441;CL:0000192,9.06e-14,43;CL:0000514,9.06e-14,43;CL:0000187,2.81e-12,55;CL:0000680,2.90e-12,58;CL:0000056,2.90e-12,58;CL:0000355,2.90e-12,58;CL:0000359,3.49e-12,32;CL:0000393,1.43e-11,61;CL:0000211,1.43e-11,61;CL:0002321,5.66e-11,250;CL:1000449,2.07e-07,15;CL:0000115,3.53e-07,36 | |||
|ontology_enrichment_development_v019=CL:0000514;4.73e-10;43!CL:0000355;8.55e-07;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003081!1.71e-21!216;UBERON:0002049!7.68e-18!79;UBERON:0007798!7.68e-18!79;UBERON:0004535!3.81e-17!110;UBERON:0001009!1.96e-15!113;UBERON:0000055!4.57e-15!69;UBERON:0001981!1.02e-14!60;UBERON:0007500!1.02e-14!60;UBERON:0004537!1.02e-14!60;UBERON:0006965!1.02e-14!60;UBERON:0001637!1.06e-13!42;UBERON:0003509!1.06e-13!42;UBERON:0004572!1.06e-13!42;UBERON:0004872!4.68e-13!84;UBERON:0002204!1.03e-11!167;UBERON:0000914!1.85e-11!83;UBERON:0002329!1.85e-11!83;UBERON:0003077!1.85e-11!83;UBERON:0003059!1.85e-11!83;UBERON:0007282!1.85e-11!83;UBERON:0009618!1.85e-11!83;UBERON:0007285!1.85e-11!83;UBERON:0000486!2.47e-11!82;UBERON:0003914!5.59e-11!118;UBERON:0004290!6.92e-11!70;UBERON:0005256!2.53e-10!143;UBERON:0002385!5.21e-10!63;UBERON:0001015!5.21e-10!63;UBERON:0000383!5.21e-10!63;UBERON:0004573!7.74e-10!33;UBERON:0004571!7.74e-10!33;UBERON:0001134!8.45e-10!61;UBERON:0002036!8.45e-10!61;UBERON:0003082!8.45e-10!61;UBERON:0000926!1.34e-08!448;UBERON:0004120!1.34e-08!448;UBERON:0006603!1.34e-08!448;UBERON:0000490!5.00e-08!138;UBERON:0004211!4.44e-07!16;UBERON:0001285!4.44e-07!16;UBERON:0007684!4.44e-07!16;UBERON:0003220!4.44e-07!16;UBERON:0004208!4.44e-07!16 | |||
|ontology_enrichment_uberon_v019=UBERON:0001637;4.51e-10;42!UBERON:0003509;4.51e-10;42!UBERON:0004572;4.51e-10;42!UBERON:0007500;8.10e-10;56!UBERON:0001981;8.10e-10;56!UBERON:0004537;8.10e-10;56!UBERON:0003914;1.45e-09;74!UBERON:0004573;5.97e-09;33!UBERON:0004571;5.97e-09;33!UBERON:0000055;2.82e-08;65!UBERON:0002049;5.93e-08;75!UBERON:0007798;5.93e-08;75!UBERON:0006555;2.07e-07;15!UBERON:0004819;2.07e-07;15!UBERON:0001285;2.07e-07;15!UBERON:0007684;2.07e-07;15 | |||
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| ||
|short_description=p1@ACTB | |||
}} | }} |
Latest revision as of 02:16, 19 September 2015
Short description: | p1@ACTB |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ACTB_5end |
Coexpression cluster: | C2155_Alveolar_Mesenchymal_Renal_Hair_Smooth_Fibroblast_Bronchial |
Association with transcript: | 0bp_to_ENST00000320713, ENST00000400179, ENST00000425660, ENST00000445914, ENST00000462494, ENST00000473257, ENST00000484841, NM_001101, uc003soq.3, uc003sot.3, uc010ksy.2_5end |
EntrezGene: | ACTB |
HGNC: | 132 |
UniProt: | F5GYT4B4DW52G5E9R0B4E335P60709Q1KLZ0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 9.81e-17 | 121 |
somatic stem cell | 6.11e-16 | 433 |
multi fate stem cell | 1.45e-15 | 427 |
stem cell | 2.29e-15 | 441 |
smooth muscle cell | 9.06e-14 | 43 |
smooth muscle myoblast | 9.06e-14 | 43 |
muscle cell | 2.81e-12 | 55 |
muscle precursor cell | 2.90e-12 | 58 |
myoblast | 2.90e-12 | 58 |
multi-potent skeletal muscle stem cell | 2.90e-12 | 58 |
vascular associated smooth muscle cell | 3.49e-12 | 32 |
electrically responsive cell | 1.43e-11 | 61 |
electrically active cell | 1.43e-11 | 61 |
embryonic cell | 5.66e-11 | 250 |
epithelial cell of nephron | 2.07e-07 | 15 |
endothelial cell | 3.53e-07 | 36 |