FFCP PHASE1:Hg19::chr3:55515400..55515437,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7474 | |EntrezGene=7474 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12784 | |HGNC=12784 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000497027,uc010hmw.2_5end | |association_with_transcript=0bp_to_ENST00000497027,uc010hmw.2_5end | ||
|cluster_id=chr3:55515400..55515437,- | |||
|coexpression_cluster_id=C1516 | |coexpression_cluster_id=C1516 | ||
|description=CAGE_peak_3_at_WNT5A_5end | |description=CAGE_peak_3_at_WNT5A_5end | ||
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|ontology_enrichment_celltype=CL:0000055!6.81e-26!180;CL:0000057!3.53e-19!75;CL:0002620!3.68e-11!23;CL:0000680!1.88e-08!57;CL:0000056!1.88e-08!57;CL:0000355!1.88e-08!57;CL:0000187!1.84e-07!54 | |ontology_enrichment_celltype=CL:0000055!6.81e-26!180;CL:0000057!3.53e-19!75;CL:0002620!3.68e-11!23;CL:0000680!1.88e-08!57;CL:0000056!1.88e-08!57;CL:0000355!1.88e-08!57;CL:0000187!1.84e-07!54 | ||
|ontology_enrichment_celltype_v019=CL:0002620;9.51e-14;23!CL:0000134;1.28e-13;55!CL:0000349;3.40e-13;19!CL:0000723;1.17e-12;61!CL:0000048;3.19e-12;58!CL:0000057;4.30e-10;73!CL:0000034;4.22e-09;69!CL:0002320;1.16e-08;188!CL:0000499;2.12e-07;28!CL:0000327;8.67e-07;15 | |ontology_enrichment_celltype_v019=CL:0002620;9.51e-14;23!CL:0000134;1.28e-13;55!CL:0000349;3.40e-13;19!CL:0000723;1.17e-12;61!CL:0000048;3.19e-12;58!CL:0000057;4.30e-10;73!CL:0000034;4.22e-09;69!CL:0002320;1.16e-08;188!CL:0000499;2.12e-07;28!CL:0000327;8.67e-07;15 | ||
|ontology_enrichment_celltype_v019_2=CL:0000057,2.38e-22,76;CL:0002620,9.43e-14,23;CL:0000349,3.58e-13,19;CL:0000048,7.02e-11,427;CL:0000723,4.21e-10,433;CL:0000034,4.03e-09,441;CL:0000499,1.63e-07,28;CL:0002320,5.48e-07,361;CL:0000327,6.29e-07,15;CL:0000680,6.62e-07,58;CL:0000056,6.62e-07,58;CL:0000355,6.62e-07,58 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:2394;4.02e-07;14 | |ontology_enrichment_disease_v019=DOID:2394;4.02e-07;14 | ||
|ontology_enrichment_disease_v019_2=DOID:2394,3.66e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0000475!5.70e-14!365;UBERON:0000914!1.57e-13!83;UBERON:0002329!1.57e-13!83;UBERON:0003077!1.57e-13!83;UBERON:0003059!1.57e-13!83;UBERON:0007282!1.57e-13!83;UBERON:0009618!1.57e-13!83;UBERON:0007285!1.57e-13!83;UBERON:0003102!6.90e-12!95;UBERON:0000481!6.17e-11!347;UBERON:0005631!8.84e-11!14;UBERON:0000158!8.84e-11!14;UBERON:0004290!2.95e-10!70;UBERON:0005256!5.15e-09!143;UBERON:0002199!6.40e-09!45;UBERON:0002416!6.40e-09!45;UBERON:0000478!1.55e-08!24;UBERON:0000486!2.72e-08!82;UBERON:0002097!9.35e-08!40;UBERON:0000064!1.13e-07!219;UBERON:0001134!2.16e-07!61;UBERON:0002036!2.16e-07!61;UBERON:0003082!2.16e-07!61;UBERON:0002385!2.23e-07!63;UBERON:0001015!2.23e-07!63;UBERON:0000383!2.23e-07!63;UBERON:0004871!2.56e-07!8;UBERON:0004923!3.44e-07!57;UBERON:0001444!5.30e-07!48;UBERON:0000305!7.65e-07!7 | |ontology_enrichment_uberon=UBERON:0000475!5.70e-14!365;UBERON:0000914!1.57e-13!83;UBERON:0002329!1.57e-13!83;UBERON:0003077!1.57e-13!83;UBERON:0003059!1.57e-13!83;UBERON:0007282!1.57e-13!83;UBERON:0009618!1.57e-13!83;UBERON:0007285!1.57e-13!83;UBERON:0003102!6.90e-12!95;UBERON:0000481!6.17e-11!347;UBERON:0005631!8.84e-11!14;UBERON:0000158!8.84e-11!14;UBERON:0004290!2.95e-10!70;UBERON:0005256!5.15e-09!143;UBERON:0002199!6.40e-09!45;UBERON:0002416!6.40e-09!45;UBERON:0000478!1.55e-08!24;UBERON:0000486!2.72e-08!82;UBERON:0002097!9.35e-08!40;UBERON:0000064!1.13e-07!219;UBERON:0001134!2.16e-07!61;UBERON:0002036!2.16e-07!61;UBERON:0003082!2.16e-07!61;UBERON:0002385!2.23e-07!63;UBERON:0001015!2.23e-07!63;UBERON:0000383!2.23e-07!63;UBERON:0004871!2.56e-07!8;UBERON:0004923!3.44e-07!57;UBERON:0001444!5.30e-07!48;UBERON:0000305!7.65e-07!7 | ||
|ontology_enrichment_uberon_v019=UBERON:0000478;4.49e-11;24!UBERON:0005631;7.75e-10;10!UBERON:0000158;7.75e-10;10!UBERON:0002097;3.71e-08;41!UBERON:0000305;3.81e-08;7!UBERON:0002384;5.03e-08;198!UBERON:0001737;3.01e-07;9!UBERON:0001557;3.01e-07;9!UBERON:0003102;3.50e-07;50!UBERON:0002199;4.96e-07;46!UBERON:0002416;4.96e-07;46 | |ontology_enrichment_uberon_v019=UBERON:0000478;4.49e-11;24!UBERON:0005631;7.75e-10;10!UBERON:0000158;7.75e-10;10!UBERON:0002097;3.71e-08;41!UBERON:0000305;3.81e-08;7!UBERON:0002384;5.03e-08;198!UBERON:0001737;3.01e-07;9!UBERON:0001557;3.01e-07;9!UBERON:0003102;3.50e-07;50!UBERON:0002199;4.96e-07;46!UBERON:0002416;4.96e-07;46 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,4.90e-13,14;UBERON:0000158,4.90e-13,14;UBERON:0003102,1.41e-12,99;UBERON:0002199,1.09e-11,46;UBERON:0002416,1.09e-11,46;UBERON:0000478,4.56e-11,24;UBERON:0002097,1.28e-10,41;UBERON:0007524,1.59e-09,73;UBERON:0002329,2.35e-09,71;UBERON:0003059,2.35e-09,71;UBERON:0007282,2.35e-09,71;UBERON:0004290,2.35e-09,71;UBERON:0009618,2.35e-09,71;UBERON:0003077,4.86e-09,72;UBERON:0007285,4.86e-09,72;UBERON:0004871,9.84e-09,8;UBERON:0004923,1.38e-08,66;UBERON:0007503,2.12e-08,78;UBERON:0000305,3.84e-08,7;UBERON:0000486,6.69e-08,83;UBERON:0001444,2.19e-07,49;UBERON:0001737,2.90e-07,9 | |||
|phase1_expression=2.54349730978779,2.35510576280081,0.422863212287913,2.00146596706261,2.23480547213644,4.36169262050184,5.06599756336621,1.89515962028049,0.261185628199839,0.737201809504527,0,109.220686065086,93.3735102928726,3.46545788288131,5.30235801164665,0.672325146451775,0.602694528023977,0.730310090387373,0.975865597581014,17.1138270726735,21.8280739631351,8.14982275843028,2.0036519099174,2.87436292653057,1.12988375635323,0,0,0,0,0,3.2511385896376,0,0,0,0.0774672005803016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.32592226663359,0,0,0,0,0,0,0,0.130059347559878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0,40.842624219456,55.1471701699478,30.9971550576163,31.811437882044,16.058950719987,4.25406677238305,13.3037638477538,11.9455308542651,0.196468613246569,0,0,0.97364218096405,2.08955684759121,1.06366368415092,0,0,0,0,0,0,0,0,0,0,0,0.35576626268671,0,0,0,0.24406205754817,0,0,0,0,0,0,0,0,0,0,0,3.47880366186723,0,0.529636723252875,0.286836620748814,2.83734705758686,2.80338800071154,1.06748995729705,1.2333377420858,0,1.34710672069688,0.653847612453835,2.11900398702904,1.72852777344,6.32667865951251,3.1216007683032,1.1409436430889,1.49448680551801,4.46251094846307,8.57926605151097,6.60118791500568,18.1697212416855,8.59840221182376,17.7720343622317,95.0402285825643,74.6746126421242,4.55080680969013,2.15585442544872,7.91179735584111,7.38199267244589,23.2733857006714,14.9252391099485,30.955267375701,43.1183229061933,0.680593098960126,31.7519655169286,69.619708754853,32.2136489762534,29.7090185123558,34.8317548825923,28.3404594050192,29.034229587728,6.07594796068558,2.82567314967476,21.7093045849938,53.2968913138913,6.62748832957129,50.0563525448426,16.3218399128777,13.564847384839,0,0.272746120590835,0,0.121973706129595,0,0,0,0,0,81.3537568115043,55.3187206845881,38.6777779786946,25.0758681137269,10.8281922250438,10.4109984035063,11.632343615389,11.3275184045237,12.7941008369577,13.5085255337292,10.9144484791104,9.842685495692,14.1279454890249,11.5424147083917,0,14.0241773803446,3.2925920906512,1.47008711385542,0,0,0,0,0.122988438543114,16.8136454092555,0,0,0.100528972411631,0.370353780634118,6.84197441151682,10.3993478527958,7.21656710126366,4.86907700895323,19.4898432431464,0.288732895522148,0,0,0,0,0,0,0,0,1.34385702559088,0.283550194484773,0,0,0,0,0,0.207328115540772,0.144119953416961,0,0.952468414382536,0,0,0,4.52440967894623,0,0,1.12131084345361,2.61576041299968,3.59357600522655,1.16344544182,0,27.894990834348,59.570138115011,33.2823798116371,4.62973273671856,4.25547396069835,4.52917704327369,11.7241954799681,11.3950537132203,7.40916303102692,27.6875756649675,11.0171504110189,21.3827005692026,7.53598442648965,2.61460037580088,6.09835246210548,0,0,0,1.19812427745791,0,14.2636905040718,9.12122232005749,5.13690806375959,7.87868238255541,0,0,0,0,2.03275699377971,0,0,0.335032530668698,0.637938751653163,0,0,0,2.4538298343828,1.00034104211935,6.51036056879365,31.4036000911519,48.7111139416252,73.0162181607118,57.165010516444,7.52365249319297,4.5481500811197,4.1389228517002,10.627609576567,10.1403042697937,31.451868437446,0.391602314925481,0,0,0,0,47.5910287170627,104.854326891613,89.8099171189151,2.23297027036899,1.53461973288062,1.40330047216537,0.384417447767103,3.07024349440022,2.2519548960105,2.96836132889982,14.9583402988576,4.6166048581413,9.69100440962948,14.0198695879578,8.59956800603698,0,0.200506470303285,0.184161977871793,9.64441364582697,11.1075612484097,5.37610101333639,0,0.231046011313244,0,0,0.422206515571503,0,0,5.82972973475776,0,1.89662506280697,0,0,0,2.23874754722178,0,0,1.02580050046556,0.328014645699706,1.30151357865721,0.824328093181778,0,0,10.9110452219273,0,11.2478750890912,12.3738519413916,3.38906957652218,1.07452572308291,7.58101148664918,6.23037420235987,5.36561767482646,4.68746450788555,2.31483292681517,0,0,0,0,0.464845549297286,18.5739284630078,0.6970372701606,0,0,0.869932992075073,3.7064843820784,1.14499909393593,2.60510858551767,4.11293252134344,15.6316759017536,3.83846686967001,2.99557291623744,0.95460974377781,0,7.91438813366585,6.86342574340137,10.0140541993833,1.2130948894399,0,0.842516912477962,4.38870365180631,2.92456187557541,2.11300293513511,13.6499911407986,13.8577323314639,0,0.551365343546124,0,2.19225442626881,1.15755106853338,4.59126326432643,9.13096696332168,2.78841148289775,1.12678241012897,4.58916327052965,4.81420300964294,7.133421029625,0,2.53329162357197,2.96365403663912,4.9331512589543,6.29882496440969,0.0962221127255121,0.670302275535787,0,0.376575203107117,0,0,0,0,0,0,0,0,0,0,0,0,1.38871292465715,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.70481688083848,76.6369796007985,131.555353608859,92.1482106297696,0.994147647766298,0.703347082052564,0.333926115068718,0,0,0.398495976502139,0,0,0,0,3.73247505194169,0,0,0,0,0,0,0,0.463840490809256,0,0,0,0,0.1137934482855,0,0,0,2.04123229368278,0.520874984799877,0,0.361789315876224,0,0.9952133393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| |phase1_expression=2.54349730978779,2.35510576280081,0.422863212287913,2.00146596706261,2.23480547213644,4.36169262050184,5.06599756336621,1.89515962028049,0.261185628199839,0.737201809504527,0,109.220686065086,93.3735102928726,3.46545788288131,5.30235801164665,0.672325146451775,0.602694528023977,0.730310090387373,0.975865597581014,17.1138270726735,21.8280739631351,8.14982275843028,2.0036519099174,2.87436292653057,1.12988375635323,0,0,0,0,0,3.2511385896376,0,0,0,0.0774672005803016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.32592226663359,0,0,0,0,0,0,0,0.130059347559878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0,40.842624219456,55.1471701699478,30.9971550576163,31.811437882044,16.058950719987,4.25406677238305,13.3037638477538,11.9455308542651,0.196468613246569,0,0,0.97364218096405,2.08955684759121,1.06366368415092,0,0,0,0,0,0,0,0,0,0,0,0.35576626268671,0,0,0,0.24406205754817,0,0,0,0,0,0,0,0,0,0,0,3.47880366186723,0,0.529636723252875,0.286836620748814,2.83734705758686,2.80338800071154,1.06748995729705,1.2333377420858,0,1.34710672069688,0.653847612453835,2.11900398702904,1.72852777344,6.32667865951251,3.1216007683032,1.1409436430889,1.49448680551801,4.46251094846307,8.57926605151097,6.60118791500568,18.1697212416855,8.59840221182376,17.7720343622317,95.0402285825643,74.6746126421242,4.55080680969013,2.15585442544872,7.91179735584111,7.38199267244589,23.2733857006714,14.9252391099485,30.955267375701,43.1183229061933,0.680593098960126,31.7519655169286,69.619708754853,32.2136489762534,29.7090185123558,34.8317548825923,28.3404594050192,29.034229587728,6.07594796068558,2.82567314967476,21.7093045849938,53.2968913138913,6.62748832957129,50.0563525448426,16.3218399128777,13.564847384839,0,0.272746120590835,0,0.121973706129595,0,0,0,0,0,81.3537568115043,55.3187206845881,38.6777779786946,25.0758681137269,10.8281922250438,10.4109984035063,11.632343615389,11.3275184045237,12.7941008369577,13.5085255337292,10.9144484791104,9.842685495692,14.1279454890249,11.5424147083917,0,14.0241773803446,3.2925920906512,1.47008711385542,0,0,0,0,0.122988438543114,16.8136454092555,0,0,0.100528972411631,0.370353780634118,6.84197441151682,10.3993478527958,7.21656710126366,4.86907700895323,19.4898432431464,0.288732895522148,0,0,0,0,0,0,0,0,1.34385702559088,0.283550194484773,0,0,0,0,0,0.207328115540772,0.144119953416961,0,0.952468414382536,0,0,0,4.52440967894623,0,0,1.12131084345361,2.61576041299968,3.59357600522655,1.16344544182,0,27.894990834348,59.570138115011,33.2823798116371,4.62973273671856,4.25547396069835,4.52917704327369,11.7241954799681,11.3950537132203,7.40916303102692,27.6875756649675,11.0171504110189,21.3827005692026,7.53598442648965,2.61460037580088,6.09835246210548,0,0,0,1.19812427745791,0,14.2636905040718,9.12122232005749,5.13690806375959,7.87868238255541,0,0,0,0,2.03275699377971,0,0,0.335032530668698,0.637938751653163,0,0,0,2.4538298343828,1.00034104211935,6.51036056879365,31.4036000911519,48.7111139416252,73.0162181607118,57.165010516444,7.52365249319297,4.5481500811197,4.1389228517002,10.627609576567,10.1403042697937,31.451868437446,0.391602314925481,0,0,0,0,47.5910287170627,104.854326891613,89.8099171189151,2.23297027036899,1.53461973288062,1.40330047216537,0.384417447767103,3.07024349440022,2.2519548960105,2.96836132889982,14.9583402988576,4.6166048581413,9.69100440962948,14.0198695879578,8.59956800603698,0,0.200506470303285,0.184161977871793,9.64441364582697,11.1075612484097,5.37610101333639,0,0.231046011313244,0,0,0.422206515571503,0,0,5.82972973475776,0,1.89662506280697,0,0,0,2.23874754722178,0,0,1.02580050046556,0.328014645699706,1.30151357865721,0.824328093181778,0,0,10.9110452219273,0,11.2478750890912,12.3738519413916,3.38906957652218,1.07452572308291,7.58101148664918,6.23037420235987,5.36561767482646,4.68746450788555,2.31483292681517,0,0,0,0,0.464845549297286,18.5739284630078,0.6970372701606,0,0,0.869932992075073,3.7064843820784,1.14499909393593,2.60510858551767,4.11293252134344,15.6316759017536,3.83846686967001,2.99557291623744,0.95460974377781,0,7.91438813366585,6.86342574340137,10.0140541993833,1.2130948894399,0,0.842516912477962,4.38870365180631,2.92456187557541,2.11300293513511,13.6499911407986,13.8577323314639,0,0.551365343546124,0,2.19225442626881,1.15755106853338,4.59126326432643,9.13096696332168,2.78841148289775,1.12678241012897,4.58916327052965,4.81420300964294,7.133421029625,0,2.53329162357197,2.96365403663912,4.9331512589543,6.29882496440969,0.0962221127255121,0.670302275535787,0,0.376575203107117,0,0,0,0,0,0,0,0,0,0,0,0,1.38871292465715,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.70481688083848,76.6369796007985,131.555353608859,92.1482106297696,0.994147647766298,0.703347082052564,0.333926115068718,0,0,0.398495976502139,0,0,0,0,3.73247505194169,0,0,0,0,0,0,0,0.463840490809256,0,0,0,0,0.1137934482855,0,0,0,2.04123229368278,0.520874984799877,0,0.361789315876224,0,0.9952133393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| ||
|short_description=p3@WNT5A | |short_description=p3@WNT5A | ||
}} | }} |
Latest revision as of 02:59, 19 September 2015
Short description: | p3@WNT5A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_WNT5A_5end |
Coexpression cluster: | C1516_amniotic_Fibroblast_Hair_Amniotic_Placental_Chondrocyte_liposarcoma |
Association with transcript: | 0bp_to_ENST00000497027, uc010hmw.2_5end |
EntrezGene: | WNT5A |
HGNC: | 12784 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 2.38e-22 | 76 |
skin fibroblast | 9.43e-14 | 23 |
extraembryonic cell | 3.58e-13 | 19 |
multi fate stem cell | 7.02e-11 | 427 |
somatic stem cell | 4.21e-10 | 433 |
stem cell | 4.03e-09 | 441 |
stromal cell | 1.63e-07 | 28 |
connective tissue cell | 5.48e-07 | 361 |
extracellular matrix secreting cell | 6.29e-07 | 15 |
muscle precursor cell | 6.62e-07 | 58 |
myoblast | 6.62e-07 | 58 |
multi-potent skeletal muscle stem cell | 6.62e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 4.90e-13 | 14 |
membranous layer | 4.90e-13 | 14 |
surface structure | 1.41e-12 | 99 |
integument | 1.09e-11 | 46 |
integumental system | 1.09e-11 | 46 |
extraembryonic structure | 4.56e-11 | 24 |
skin of body | 1.28e-10 | 41 |
dense mesenchyme tissue | 1.59e-09 | 73 |
somite | 2.35e-09 | 71 |
presomitic mesoderm | 2.35e-09 | 71 |
presumptive segmental plate | 2.35e-09 | 71 |
dermomyotome | 2.35e-09 | 71 |
trunk paraxial mesoderm | 2.35e-09 | 71 |
paraxial mesoderm | 4.86e-09 | 72 |
presumptive paraxial mesoderm | 4.86e-09 | 72 |
somatic layer of lateral plate mesoderm | 9.84e-09 | 8 |
organ component layer | 1.38e-08 | 66 |
epithelial vesicle | 2.12e-08 | 78 |
amnion | 3.84e-08 | 7 |
multilaminar epithelium | 6.69e-08 | 83 |
subdivision of head | 2.19e-07 | 49 |
larynx | 2.90e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 3.66e-07 | 14 |