FFCP PHASE1:Hg19::chr11:64546565..64546600,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(11 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7536 | |EntrezGene=7536 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12950 | |HGNC=12950 | ||
|TSSclassifier=strong | |||
|UniProt=Q15637 | |UniProt=Q15637 | ||
|association_with_transcript=-249bp_to_NM_004630,NM_201995,NM_201997,NM_201998,NR_033649,NR_033650_5end | |association_with_transcript=-249bp_to_NM_004630,NM_201995,NM_201997,NM_201998,NR_033649,NR_033650_5end | ||
|cluster_id=chr11:64546565..64546600,- | |||
|coexpression_cluster_id=C1 | |||
|description=CAGE_peak_28_at_SF1_5end | |description=CAGE_peak_28_at_SF1_5end | ||
|id=chr11:64546565..64546600,- | |id=chr11:64546565..64546600,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000775;1.23e-21;3!CL:0000094;6.26e-18;8!CL:0000081;3.20e-13;11!CL:0000771;6.67e-09;2!CL:0002363;6.67e-09;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000775,1.17e-21,3;CL:0000094,4.97e-18,8;CL:0000081,2.71e-13,11;CL:0000771,5.08e-09,2;CL:0002363,8.74e-09,2;CL:0000008,8.74e-09,2 | |||
|ontology_enrichment_development_v019=UBERON:0005754;1.78e-16;1!CL:0000008;6.67e-09;2!UBERON:0007297;6.67e-09;2!UBERON:0009117;3.33e-07;10!UBERON:0005564;3.33e-07;10 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.22e-08!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0000007;4.04e-31;2!UBERON:0000473;4.82e-18;8!UBERON:0000998;1.78e-16;1!UBERON:0006868;1.78e-16;1!UBERON:0003296;4.18e-16;4!UBERON:0010133;4.18e-16;4!UBERON:0003135;2.66e-13;11!UBERON:0001894;1.29e-09;7!UBERON:0003566;6.67e-09;2!UBERON:0001777;6.67e-09;2!UBERON:0000991;3.11e-07;21!UBERON:0003101;6.29e-07;22!UBERON:0000079;6.29e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000007,4.71e-31,2;UBERON:0000473,4.18e-18,8;UBERON:0000998,1.21e-16,1;UBERON:0006868,1.21e-16,1;UBERON:0003296,4.51e-16,4;UBERON:0010133,4.51e-16,4;UBERON:0003135,2.39e-13,11;UBERON:0001894,1.35e-09,7;UBERON:0006222,1.35e-09,7;UBERON:0003566,8.74e-09,2;UBERON:0001777,8.74e-09,2;UBERON:0000991,2.95e-07,21;UBERON:0009196,2.95e-07,21;UBERON:0009117,2.95e-07,21;UBERON:0005564,2.95e-07,21;UBERON:0004176,5.98e-07,22;UBERON:0003101,5.98e-07,22;UBERON:0000079,5.98e-07,22 | |||
|phase1_expression=0,0.214100523890983,0,0,0,0,0,0.631719873426831,0,0,0,0.218441372130172,0.263766978228454,0,0,0,0,0,0,0,0,0,0,0,0.125542639594803,0.0764134057479513,0.0821005894499457,0.157421562627358,0,0.767658796194425,0.154816123316076,0,0,0,0.154934401160603,0,0,0,0.200544447470142,0,0,0,0,0.290796477559129,0,0.242584061187816,0.232429036905685,0,0,0,0.256160706529101,0,0,0,0,0,0.545812300115692,0.224723484445085,0.612167784741805,0,0,0,0,0,0.580418477257168,0,0,0,0,0.217188844705117,0,0,0.316462387440884,0,0,0.209658645508376,0.112328631146495,0.150176892841506,0,0,0.19891667719909,0.365328307529268,0,0,0,0,0,0.574752439954483,0,0.954053754535364,0,0.587237189370939,0,0,0,0,0.393419540227666,0,0,0.167186495390678,0.32592226663359,0.946895611469467,0,0,0.883817722424512,0.443067789167242,0,0,0,0,0,0.289803085735052,0.14828656316206,0,0,0.113309342697566,0.383220493601921,0,0.253019692019503,0,0,0,0.301150238155546,0.127986611154418,0,0,0,0,0.534880391567015,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0.087834785693126,4.32230949142452,0,0.370784442784429,0,0,0,0,0,0,0,0,0.347140501607594,0,0,0,0,0,0,0,0,0,0,0,0.81014194788176,0.17859945656816,0,0.112611480483322,0,0,0.183201743930407,1.31780417436063,0,0,0,0,0.132409180813219,0.286836620748814,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117434498643765,0.161872944368132,0,0,0,0,0,0,0.910161361938026,0,0,0,0,0,0,0,0,0,0,0,0,0.103052529238439,0,0,0,0,0,0.0920498986422993,0,0.355009592516614,0,0,0,0.272746120590835,0,0,0.530119073285941,0.116193942869518,0.207322110030741,0,0,0,0,0,0,0.721879481669586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109750285408626,0,0,0,0,1.03993478527958,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0895585227028483,0,0,0.492663237895943,0,0,0.144119953416961,0.25248486685276,0,0,0,0,0,0,0,0.112131084345361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.871533458600294,0.099972991182057,0,0,0,0,0,0,0,0,0,0,0.197030760201927,0,0.128343036279748,0,0,0,0,0,0.749007023947182,5.9832291840805,4.55857064779639,0,0,0,0,0,0,0,0.300946099727719,0,0,0,0,0,0,0,0,0.647142602455851,0.213455115606889,0,0,0,0,0.153461973288062,0,0,0,0,0,0,0,0,0,0,0,0.200506470303285,0.184161977871793,0,0,0.131124414959424,0.451199612907412,0.0770153371044148,0,0,0.105551628892876,0,0.170093705276516,0,0,0,0,0,0,0.447749509444357,0,0,0,0,0,0.103041011647722,0.0915694648183434,0,0,0,0,0.096670718292122,0,0,0,0,0,0,0,0,0,0,0.10115778085555,0,0.62962469366128,0,0.308033580176089,0,0.869932992075073,0,0,0,0,0,0,0,0,0.78494864019923,0,0.274537029736055,0,0.202182481573316,0,0.421258456238981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.08006287447623,0.79312517629427,0,0,0.245040215981032,0,0,0,0.159426272728822,0,0,0.211673582723883,0,0.280797178113459,0,0,0,0,0,0,0,0,0,0,0,0,0,1.23087398947712,0,0,0,0.18714054040822,0.146508179271894,0,0,0,0.47748896947538,0,0,0,0.281338832821026,0,0,0,0,0.276283915531148,0.251932747854276,0.102268682502155,0,0,0.0898683511473268,0,0,0.0986434056369336,0,0,0,0,0,0,0.0874599999961957,0,0,0,0,0,0,0,0,0.120596438625408,0,0.442317039724898,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0.067401132980677,0,0.234264445725339,0,0,0,0.789168805698781,0,0,0.063186579628488,0,0,0,0,0,0,0,0.138674673013139,0.520679215005393,0,0,0.52418000472609,0,0,0,0,0,0,0,0.137041924646751,0.19871461170299,0.189932387867636,0.195551382734803,0,0,0,0,0,0,0,0,0,0.271808412147228,0,0,0,0,0,0,0,0,0.279282401272254,0,0,0,0,0,0.0671834724867263,0,0,0.157566364614447,0,0.13480708770837,0.0984274815147488,0.169346664131569,0,0.136203406111576,0,0.137539436597234,0,0,0,0.182248669974074,0,0,0.104909176269996,0.211200673038813,0,0.191915197319445,0,0,0.25426853765475,0,0,0,0,0.082092520749339,0,0.226624183040251,0.146552233678082,0,0,0,0,0,0.213574825135389,0.471612915298998,0,0,0.197611631897944,0.243585196761792,0,0,0,0,0,0,0,0,0.250381861413,1.14681839138014,0.221858103073705,0,0.138348634936231,0,0.151649117541648,0,0,0,0,0,0,0,0,0,0,0,0.151230923763239,0.15543720058278,0,0.477890301491107,0,0,0,0,0,0,0,0,0.363697318405119,0,0,0,0,0,0,0,0,0.428883182749851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194860308839388,0,0.163565394255844,0,0,0,0,0,0.172214979660816,0,0,0,0,0,0.107824811396682,0,0,0,0,0,0.558644917973244,0,0,0,0,0,0,0,0.319267718114302,0,0,0.0691572524642179,0,0,0.0981477185010256,0,0,0.115525666150338,0,0,0,0.0752103283492573,0,0.781514011233092,0,0,0.739280431085226,0.0675375846183947,0,0.206686796501184,0.126831620387814,0,0.548257766857182,0,0,0,0,0,1.21393120847326,1.13831095675649,0.0887023701626388,0,0,0.0679697329768317,0.0657727735628491,0,0,0,0.157115589916002,0,0,0,0,0.142953088353313,0,0,0,0,0,0,0,0.430227358820278,0.118332000730565,0,1.27016115057279,0.4582137370881,0,0,0,0,0,0,0,0,0,0,0.198950775161368,0,0,0.109940516745429,0.150962843566674,0.154348316215889,0,0,0,0,0,0,0,0.169927114687817,0.187967835959707,0.0644578879735772,0.0999411559249289,0,0,0.0802413666891683,0,0.458729283404541,0.143339583151451,0.157771562193185,0,0,0,0,0.462175628631418,0,0.126166424835079,0,0,0,0,0.0918948995348449,0,9.24500118262521,20.9012021521819,0,0.20686599172379,0,0,0.258355639344024,0.124149428591716,0.112131862580613,0.0636471582781649,0,0,0,0.26940821205835,0.0717222053926763,0,0,0,0,0,0,0,0,0,0.201273793591026,0 | |phase1_expression=0,0.214100523890983,0,0,0,0,0,0.631719873426831,0,0,0,0.218441372130172,0.263766978228454,0,0,0,0,0,0,0,0,0,0,0,0.125542639594803,0.0764134057479513,0.0821005894499457,0.157421562627358,0,0.767658796194425,0.154816123316076,0,0,0,0.154934401160603,0,0,0,0.200544447470142,0,0,0,0,0.290796477559129,0,0.242584061187816,0.232429036905685,0,0,0,0.256160706529101,0,0,0,0,0,0.545812300115692,0.224723484445085,0.612167784741805,0,0,0,0,0,0.580418477257168,0,0,0,0,0.217188844705117,0,0,0.316462387440884,0,0,0.209658645508376,0.112328631146495,0.150176892841506,0,0,0.19891667719909,0.365328307529268,0,0,0,0,0,0.574752439954483,0,0.954053754535364,0,0.587237189370939,0,0,0,0,0.393419540227666,0,0,0.167186495390678,0.32592226663359,0.946895611469467,0,0,0.883817722424512,0.443067789167242,0,0,0,0,0,0.289803085735052,0.14828656316206,0,0,0.113309342697566,0.383220493601921,0,0.253019692019503,0,0,0,0.301150238155546,0.127986611154418,0,0,0,0,0.534880391567015,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0.087834785693126,4.32230949142452,0,0.370784442784429,0,0,0,0,0,0,0,0,0.347140501607594,0,0,0,0,0,0,0,0,0,0,0,0.81014194788176,0.17859945656816,0,0.112611480483322,0,0,0.183201743930407,1.31780417436063,0,0,0,0,0.132409180813219,0.286836620748814,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117434498643765,0.161872944368132,0,0,0,0,0,0,0.910161361938026,0,0,0,0,0,0,0,0,0,0,0,0,0.103052529238439,0,0,0,0,0,0.0920498986422993,0,0.355009592516614,0,0,0,0.272746120590835,0,0,0.530119073285941,0.116193942869518,0.207322110030741,0,0,0,0,0,0,0.721879481669586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109750285408626,0,0,0,0,1.03993478527958,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0895585227028483,0,0,0.492663237895943,0,0,0.144119953416961,0.25248486685276,0,0,0,0,0,0,0,0.112131084345361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.871533458600294,0.099972991182057,0,0,0,0,0,0,0,0,0,0,0.197030760201927,0,0.128343036279748,0,0,0,0,0,0.749007023947182,5.9832291840805,4.55857064779639,0,0,0,0,0,0,0,0.300946099727719,0,0,0,0,0,0,0,0,0.647142602455851,0.213455115606889,0,0,0,0,0.153461973288062,0,0,0,0,0,0,0,0,0,0,0,0.200506470303285,0.184161977871793,0,0,0.131124414959424,0.451199612907412,0.0770153371044148,0,0,0.105551628892876,0,0.170093705276516,0,0,0,0,0,0,0.447749509444357,0,0,0,0,0,0.103041011647722,0.0915694648183434,0,0,0,0,0.096670718292122,0,0,0,0,0,0,0,0,0,0,0.10115778085555,0,0.62962469366128,0,0.308033580176089,0,0.869932992075073,0,0,0,0,0,0,0,0,0.78494864019923,0,0.274537029736055,0,0.202182481573316,0,0.421258456238981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.08006287447623,0.79312517629427,0,0,0.245040215981032,0,0,0,0.159426272728822,0,0,0.211673582723883,0,0.280797178113459,0,0,0,0,0,0,0,0,0,0,0,0,0,1.23087398947712,0,0,0,0.18714054040822,0.146508179271894,0,0,0,0.47748896947538,0,0,0,0.281338832821026,0,0,0,0,0.276283915531148,0.251932747854276,0.102268682502155,0,0,0.0898683511473268,0,0,0.0986434056369336,0,0,0,0,0,0,0.0874599999961957,0,0,0,0,0,0,0,0,0.120596438625408,0,0.442317039724898,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0.067401132980677,0,0.234264445725339,0,0,0,0.789168805698781,0,0,0.063186579628488,0,0,0,0,0,0,0,0.138674673013139,0.520679215005393,0,0,0.52418000472609,0,0,0,0,0,0,0,0.137041924646751,0.19871461170299,0.189932387867636,0.195551382734803,0,0,0,0,0,0,0,0,0,0.271808412147228,0,0,0,0,0,0,0,0,0.279282401272254,0,0,0,0,0,0.0671834724867263,0,0,0.157566364614447,0,0.13480708770837,0.0984274815147488,0.169346664131569,0,0.136203406111576,0,0.137539436597234,0,0,0,0.182248669974074,0,0,0.104909176269996,0.211200673038813,0,0.191915197319445,0,0,0.25426853765475,0,0,0,0,0.082092520749339,0,0.226624183040251,0.146552233678082,0,0,0,0,0,0.213574825135389,0.471612915298998,0,0,0.197611631897944,0.243585196761792,0,0,0,0,0,0,0,0,0.250381861413,1.14681839138014,0.221858103073705,0,0.138348634936231,0,0.151649117541648,0,0,0,0,0,0,0,0,0,0,0,0.151230923763239,0.15543720058278,0,0.477890301491107,0,0,0,0,0,0,0,0,0.363697318405119,0,0,0,0,0,0,0,0,0.428883182749851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194860308839388,0,0.163565394255844,0,0,0,0,0,0.172214979660816,0,0,0,0,0,0.107824811396682,0,0,0,0,0,0.558644917973244,0,0,0,0,0,0,0,0.319267718114302,0,0,0.0691572524642179,0,0,0.0981477185010256,0,0,0.115525666150338,0,0,0,0.0752103283492573,0,0.781514011233092,0,0,0.739280431085226,0.0675375846183947,0,0.206686796501184,0.126831620387814,0,0.548257766857182,0,0,0,0,0,1.21393120847326,1.13831095675649,0.0887023701626388,0,0,0.0679697329768317,0.0657727735628491,0,0,0,0.157115589916002,0,0,0,0,0.142953088353313,0,0,0,0,0,0,0,0.430227358820278,0.118332000730565,0,1.27016115057279,0.4582137370881,0,0,0,0,0,0,0,0,0,0,0.198950775161368,0,0,0.109940516745429,0.150962843566674,0.154348316215889,0,0,0,0,0,0,0,0.169927114687817,0.187967835959707,0.0644578879735772,0.0999411559249289,0,0,0.0802413666891683,0,0.458729283404541,0.143339583151451,0.157771562193185,0,0,0,0,0.462175628631418,0,0.126166424835079,0,0,0,0,0.0918948995348449,0,9.24500118262521,20.9012021521819,0,0.20686599172379,0,0,0.258355639344024,0.124149428591716,0.112131862580613,0.0636471582781649,0,0,0,0.26940821205835,0.0717222053926763,0,0,0,0,0,0,0,0,0,0.201273793591026,0 | ||
|short_description=p28@SF1 | |short_description=p28@SF1 | ||
}} | }} |
Latest revision as of 04:34, 19 September 2015
Short description: | p28@SF1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_28_at_SF1_5end |
Coexpression cluster: | C1_testis_epididymis_embryonic_medulla_pituitary_trachea_caudate |
Association with transcript: | -249bp_to_NM_004630, NM_201995, NM_201997, NM_201998, NR_033649, NR_033650_5end |
EntrezGene: | SF1 |
HGNC: | 12950 |
UniProt: | Q15637 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neutrophil | 1.17e-21 | 3 |
granulocyte | 4.97e-18 | 8 |
blood cell | 2.71e-13 | 11 |
eosinophil | 5.08e-09 | 2 |
keratocyte | 8.74e-09 | 2 |
migratory cranial neural crest cell | 8.74e-09 | 2 |
Ontology term | p-value | n |
---|---|---|
pituitary gland | 4.71e-31 | 2 |
testis | 4.18e-18 | 8 |
seminal vesicle | 1.21e-16 | 1 |
seminal fluid secreting gland | 1.21e-16 | 1 |
gland of diencephalon | 4.51e-16 | 4 |
neuroendocrine gland | 4.51e-16 | 4 |
male reproductive organ | 2.39e-13 | 11 |
diencephalon | 1.35e-09 | 7 |
future diencephalon | 1.35e-09 | 7 |
head connective tissue | 8.74e-09 | 2 |
substantia propria of cornea | 8.74e-09 | 2 |
gonad | 2.95e-07 | 21 |
indifferent external genitalia | 2.95e-07 | 21 |
indifferent gonad | 2.95e-07 | 21 |
gonad primordium | 2.95e-07 | 21 |
external genitalia | 5.98e-07 | 22 |
male organism | 5.98e-07 | 22 |
male reproductive system | 5.98e-07 | 22 |