FFCP PHASE1:Hg19::chr1:77530053..77530075,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=81849 | |EntrezGene=81849 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=19342 | |HGNC=19342 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=392bp_to_uc001dhj.2_5end | |association_with_transcript=392bp_to_uc001dhj.2_5end | ||
|cluster_id=chr1:77530053..77530075,+ | |||
|coexpression_cluster_id=C24 | |coexpression_cluster_id=C24 | ||
|description=CAGE_peak_11_at_ST6GALNAC5_5end | |description=CAGE_peak_11_at_ST6GALNAC5_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000047;1.07e-17;2 | |ontology_enrichment_celltype_v019=CL:0000047;1.07e-17;2 | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:154;1.07e-17;2!DOID:4236;1.07e-17;2 | |ontology_enrichment_disease_v019=DOID:154;1.07e-17;2!DOID:4236;1.07e-17;2 | ||
|ontology_enrichment_disease_v019_2=DOID:154,1.27e-17,2;DOID:4236,1.27e-17,2 | |||
|ontology_enrichment_uberon=UBERON:0002780!3.16e-28!41;UBERON:0001890!3.16e-28!41;UBERON:0006240!3.16e-28!41;UBERON:0003080!1.86e-27!42;UBERON:0002020!3.01e-27!34;UBERON:0003528!3.01e-27!34;UBERON:0001869!1.21e-25!32;UBERON:0000955!1.21e-24!69;UBERON:0006238!1.21e-24!69;UBERON:0005743!1.36e-24!86;UBERON:0001017!4.71e-24!82;UBERON:0001893!5.98e-24!34;UBERON:0001049!1.16e-23!57;UBERON:0005068!1.16e-23!57;UBERON:0006241!1.16e-23!57;UBERON:0007135!1.16e-23!57;UBERON:0000073!1.27e-23!94;UBERON:0001016!1.27e-23!94;UBERON:0002616!1.08e-22!59;UBERON:0002619!7.80e-22!22;UBERON:0002791!8.51e-22!33;UBERON:0003056!9.73e-22!61;UBERON:0001950!4.08e-20!20;UBERON:0000956!5.40e-19!25;UBERON:0000203!5.40e-19!25;UBERON:0003075!5.83e-19!86;UBERON:0007284!5.83e-19!86;UBERON:0002346!7.32e-18!90;UBERON:0000200!6.02e-16!6;UBERON:0007023!2.22e-15!115;UBERON:0000153!2.32e-15!129;UBERON:0007811!2.32e-15!129;UBERON:0000033!4.13e-15!123;UBERON:0004121!2.05e-13!169;UBERON:0000924!6.11e-13!173;UBERON:0006601!6.11e-13!173;UBERON:0002771!1.63e-12!3;UBERON:0002308!8.56e-10!9;UBERON:0000125!8.56e-10!9;UBERON:0003296!1.10e-09!4;UBERON:0010133!1.10e-09!4;UBERON:0001905!2.41e-09!2;UBERON:0002757!2.41e-09!2;UBERON:0010134!2.41e-09!2;UBERON:0002784!2.41e-09!2;UBERON:0005408!2.41e-09!2;UBERON:0001899!2.41e-09!2;UBERON:0001870!1.33e-08!2;UBERON:0002148!3.51e-08!2;UBERON:0009662!3.51e-08!2;UBERON:0001871!5.15e-08!7;UBERON:0000025!1.81e-07!194;UBERON:0002021!2.20e-07!5;UBERON:0000349!2.45e-07!5 | |ontology_enrichment_uberon=UBERON:0002780!3.16e-28!41;UBERON:0001890!3.16e-28!41;UBERON:0006240!3.16e-28!41;UBERON:0003080!1.86e-27!42;UBERON:0002020!3.01e-27!34;UBERON:0003528!3.01e-27!34;UBERON:0001869!1.21e-25!32;UBERON:0000955!1.21e-24!69;UBERON:0006238!1.21e-24!69;UBERON:0005743!1.36e-24!86;UBERON:0001017!4.71e-24!82;UBERON:0001893!5.98e-24!34;UBERON:0001049!1.16e-23!57;UBERON:0005068!1.16e-23!57;UBERON:0006241!1.16e-23!57;UBERON:0007135!1.16e-23!57;UBERON:0000073!1.27e-23!94;UBERON:0001016!1.27e-23!94;UBERON:0002616!1.08e-22!59;UBERON:0002619!7.80e-22!22;UBERON:0002791!8.51e-22!33;UBERON:0003056!9.73e-22!61;UBERON:0001950!4.08e-20!20;UBERON:0000956!5.40e-19!25;UBERON:0000203!5.40e-19!25;UBERON:0003075!5.83e-19!86;UBERON:0007284!5.83e-19!86;UBERON:0002346!7.32e-18!90;UBERON:0000200!6.02e-16!6;UBERON:0007023!2.22e-15!115;UBERON:0000153!2.32e-15!129;UBERON:0007811!2.32e-15!129;UBERON:0000033!4.13e-15!123;UBERON:0004121!2.05e-13!169;UBERON:0000924!6.11e-13!173;UBERON:0006601!6.11e-13!173;UBERON:0002771!1.63e-12!3;UBERON:0002308!8.56e-10!9;UBERON:0000125!8.56e-10!9;UBERON:0003296!1.10e-09!4;UBERON:0010133!1.10e-09!4;UBERON:0001905!2.41e-09!2;UBERON:0002757!2.41e-09!2;UBERON:0010134!2.41e-09!2;UBERON:0002784!2.41e-09!2;UBERON:0005408!2.41e-09!2;UBERON:0001899!2.41e-09!2;UBERON:0001870!1.33e-08!2;UBERON:0002148!3.51e-08!2;UBERON:0009662!3.51e-08!2;UBERON:0001871!5.15e-08!7;UBERON:0000025!1.81e-07!194;UBERON:0002021!2.20e-07!5;UBERON:0000349!2.45e-07!5 | ||
|ontology_enrichment_uberon_v019=UBERON:0001905;7.41e-67;2!UBERON:0002757;7.41e-67;2!UBERON:0010134;7.41e-67;2!UBERON:0005408;7.41e-67;2!UBERON:0001899;7.41e-67;2!UBERON:0003296;4.28e-34;4!UBERON:0010133;4.28e-34;4!UBERON:0002784;4.28e-34;4!UBERON:0001894;5.35e-20;7!UBERON:0001954;1.07e-17;2!UBERON:0003022;1.07e-17;2!UBERON:0002421;1.07e-17;2!UBERON:0002600;1.07e-17;2!UBERON:0002780;3.99e-11;41!UBERON:0001890;3.99e-11;41!UBERON:0001872;6.13e-08;5!UBERON:0000349;7.01e-08;5!UBERON:0000073;1.04e-07;53!UBERON:0002616;1.04e-07;53 | |ontology_enrichment_uberon_v019=UBERON:0001905;7.41e-67;2!UBERON:0002757;7.41e-67;2!UBERON:0010134;7.41e-67;2!UBERON:0005408;7.41e-67;2!UBERON:0001899;7.41e-67;2!UBERON:0003296;4.28e-34;4!UBERON:0010133;4.28e-34;4!UBERON:0002784;4.28e-34;4!UBERON:0001894;5.35e-20;7!UBERON:0001954;1.07e-17;2!UBERON:0003022;1.07e-17;2!UBERON:0002421;1.07e-17;2!UBERON:0002600;1.07e-17;2!UBERON:0002780;3.99e-11;41!UBERON:0001890;3.99e-11;41!UBERON:0001872;6.13e-08;5!UBERON:0000349;7.01e-08;5!UBERON:0000073;1.04e-07;53!UBERON:0002616;1.04e-07;53 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001905,7.41e-67,2;UBERON:0002757,7.41e-67,2;UBERON:0010134,7.41e-67,2;UBERON:0005408,7.41e-67,2;UBERON:0001899,7.41e-67,2;UBERON:0003296,4.28e-34,4;UBERON:0010133,4.28e-34,4;UBERON:0002784,4.28e-34,4;UBERON:0001894,5.35e-20,7;UBERON:0006222,5.35e-20,7;UBERON:0001954,9.07e-18,2;UBERON:0003022,9.07e-18,2;UBERON:0002421,9.07e-18,2;UBERON:0002600,9.07e-18,2;UBERON:0002780,3.31e-13,41;UBERON:0001890,3.31e-13,41;UBERON:0003080,3.31e-13,41;UBERON:0006240,3.31e-13,41;UBERON:0001017,2.00e-10,81;UBERON:0000073,2.12e-10,53;UBERON:0002616,2.12e-10,53;UBERON:0001049,7.01e-10,56;UBERON:0005068,7.01e-10,56;UBERON:0006241,7.01e-10,56;UBERON:0007135,7.01e-10,56;UBERON:0001016,1.91e-09,89;UBERON:0003056,3.98e-09,61;UBERON:0000955,3.85e-08,68;UBERON:0006238,3.85e-08,68;UBERON:0001872,6.13e-08,5;UBERON:0000349,6.55e-08,5;UBERON:0003075,6.13e-07,82;UBERON:0007284,6.13e-07,82;UBERON:0002619,9.95e-07,22 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112328631146495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213557388818567,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109750285408626,0,0,0.0925884451585296,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199945982364114,0,0,0,0,0,0,0,0,0,0,0,0,0,1.52456774533478,0,0,0,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160853921143607,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201799707191048,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.281338832821026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,1.04174996959975,0,0.120596438625408,0,0,0,0,0,0,0,0.113942055847001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.182454789215666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126621591911757,0,0.0801588202515337,0.213452994739353,0,0.144090417154106,0,0,0,0,0,0,0,0,0.288950589901519,0,0.273810757783986,0,0,0,0,0.229160424011684,0,0.199679000498991,0,0,0,0.360299883542404,0,0,0,0,0,0,0,1.63444087333891,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.886068179966986,0.244052529803926,0.500763722825999,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.521745061811734,0,0,0,0,0,0,0,0.400027764663154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.967809053062115,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383683113910955,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0.638535436228605,0,0.504143392443436,0.0691572524642179,0.161475645631851,0,0,0,0,0,0,0,0,0,0.20170506870352,0,0,0,0,0.0675375846183947,0,0.620060389503552,0,2.18789923607288,0,0,0,0,3.74991285114801,18.1593209998165,0,0.227662191351298,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0714765441766563,0.158013611732727,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109940516745429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436350690340377,0,0,0,0,0,0.109265571963696,0,0,0,0,0,0,0,0,0,0,0,0,0.0620747142958579,0,0.0636471582781649,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112328631146495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213557388818567,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109750285408626,0,0,0.0925884451585296,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199945982364114,0,0,0,0,0,0,0,0,0,0,0,0,0,1.52456774533478,0,0,0,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160853921143607,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201799707191048,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.281338832821026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,1.04174996959975,0,0.120596438625408,0,0,0,0,0,0,0,0.113942055847001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.182454789215666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126621591911757,0,0.0801588202515337,0.213452994739353,0,0.144090417154106,0,0,0,0,0,0,0,0,0.288950589901519,0,0.273810757783986,0,0,0,0,0.229160424011684,0,0.199679000498991,0,0,0,0.360299883542404,0,0,0,0,0,0,0,1.63444087333891,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.886068179966986,0.244052529803926,0.500763722825999,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.521745061811734,0,0,0,0,0,0,0,0.400027764663154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.967809053062115,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383683113910955,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0.638535436228605,0,0.504143392443436,0.0691572524642179,0.161475645631851,0,0,0,0,0,0,0,0,0,0.20170506870352,0,0,0,0,0.0675375846183947,0,0.620060389503552,0,2.18789923607288,0,0,0,0,3.74991285114801,18.1593209998165,0,0.227662191351298,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0714765441766563,0.158013611732727,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109940516745429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436350690340377,0,0,0,0,0,0.109265571963696,0,0,0,0,0,0,0,0,0,0,0,0,0.0620747142958579,0,0.0636471582781649,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p11@ST6GALNAC5 | |short_description=p11@ST6GALNAC5 | ||
}} | }} |
Latest revision as of 06:39, 19 September 2015
Short description: | p11@ST6GALNAC5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_11_at_ST6GALNAC5_5end |
Coexpression cluster: | C24_pineal_eye_retina_retinoblastoma_medulloblastoma_small_cerebral |
Association with transcript: | 392bp_to_uc001dhj.2_5end |
EntrezGene: | ST6GALNAC5 |
HGNC: | 19342 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pineal body | 7.41e-67 | 2 |
regional part of epithalamus | 7.41e-67 | 2 |
secretory circumventricular organ | 7.41e-67 | 2 |
circumventricular organ | 7.41e-67 | 2 |
epithalamus | 7.41e-67 | 2 |
gland of diencephalon | 4.28e-34 | 4 |
neuroendocrine gland | 4.28e-34 | 4 |
regional part of diencephalon | 4.28e-34 | 4 |
diencephalon | 5.35e-20 | 7 |
future diencephalon | 5.35e-20 | 7 |
Ammon's horn | 9.07e-18 | 2 |
lobe parts of cerebral cortex | 9.07e-18 | 2 |
hippocampal formation | 9.07e-18 | 2 |
limbic lobe | 9.07e-18 | 2 |
regional part of forebrain | 3.31e-13 | 41 |
forebrain | 3.31e-13 | 41 |
anterior neural tube | 3.31e-13 | 41 |
future forebrain | 3.31e-13 | 41 |
central nervous system | 2.00e-10 | 81 |
regional part of nervous system | 2.12e-10 | 53 |
regional part of brain | 2.12e-10 | 53 |
neural tube | 7.01e-10 | 56 |
neural rod | 7.01e-10 | 56 |
future spinal cord | 7.01e-10 | 56 |
neural keel | 7.01e-10 | 56 |
nervous system | 1.91e-09 | 89 |
pre-chordal neural plate | 3.98e-09 | 61 |
brain | 3.85e-08 | 68 |
future brain | 3.85e-08 | 68 |
parietal lobe | 6.13e-08 | 5 |
limbic system | 6.55e-08 | 5 |
neural plate | 6.13e-07 | 82 |
presumptive neural plate | 6.13e-07 | 82 |
regional part of cerebral cortex | 9.95e-07 | 22 |
Ontology term | p-value | n |
---|---|---|
mixed cell type cancer | 1.27e-17 | 2 |
carcinosarcoma | 1.27e-17 | 2 |