Personal tools

FFCP PHASE1:Hg19::chr12:54982916..54982965,-: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(2 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{FFCP|DPIdataset=robustDPI|EntrezGene=5502|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=9286|TSSclassifier=W|UniProt=Q13522,E7ENB4|association_with_transcript=-473bp_to_ENST00000257905,ENST00000379690,NM_006741,uc001sgg.2_5end|coexpression_cluster_id=C63|description=CAGE_peak_5_at_PPP1R1A_5end|id=chr12:54982916..54982965,-|ontology_enrichment_celltype=CL:0000136!1.94e-37!15;CL:0002521!1.27e-16!3;CL:0000325!4.37e-14!39;CL:0002535!3.09e-07!2;CL:0002617!4.69e-07!2|ontology_enrichment_celltype_v019=CL:0000333;2.94e-11;5|ontology_enrichment_celltype_v019_2=|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:171!1.94e-19!10;DOID:3095!5.72e-09!22;DOID:2994!5.72e-09!22;DOID:3193!2.28e-07!2;DOID:962!2.28e-07!2|ontology_enrichment_disease_v019=DOID:3193;5.56e-26;2!DOID:962;5.56e-26;2!DOID:171;6.99e-21;10!DOID:1192;8.00e-18;3!DOID:3095;4.14e-10;22!DOID:2994;4.14e-10;22!DOID:169;1.32e-09;6|ontology_enrichment_disease_v019_2=DOID:3193,5.56e-26,2;DOID:962,5.56e-26,2;DOID:171,6.99e-21,10;DOID:1192,8.00e-18,3;DOID:3095,4.14e-10,22;DOID:2994,4.14e-10,22;DOID:169,1.32e-09,6|ontology_enrichment_uberon=UBERON:0002190!1.27e-16!3;UBERON:0002135!5.38e-13!1;UBERON:0007190!1.09e-12!1;UBERON:0002072!2.35e-10!5;UBERON:0001013!4.59e-08!14;UBERON:0003714!2.28e-07!2;UBERON:0006955!3.09e-07!2;UBERON:0004801!3.09e-07!2;UBERON:0002133!3.93e-07!2|ontology_enrichment_uberon_v019=UBERON:0003714;5.56e-26;2!UBERON:0002346;8.82e-14;4!UBERON:0000923;8.82e-14;4!UBERON:0010316;8.82e-14;4!UBERON:0005291;8.82e-14;4!UBERON:0002050;2.66e-11;5!UBERON:0005423;2.66e-11;5!UBERON:0000013;2.94e-11;5!UBERON:0002410;2.94e-11;5!UBERON:0000010;7.91e-07;8|ontology_enrichment_uberon_v019_2=UBERON:0003714,5.56e-26,2;UBERON:0000013,2.94e-11,5;UBERON:0002410,2.94e-11,5;UBERON:0000010,7.91e-07,8|phase1_expression=0,0.214100523890983,0,0,0,0,0,0.631719873426831,0.261185628199839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0,0,0,0,0.503865495708552,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.04123229368278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279282401272254,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.08803560673895,0.2506898940227,0.306345576763462,0.327872630709804,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.33946505990805,0.850299680406731,11.8978333688642,4.46915934378595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p5@PPP1R1A}}
{{FFCP
|DHSsupport=supported 
|DPIdataset=robust
|EntrezGene=5502
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding
|HGNC=9286
|TSSclassifier=strong
|UniProt=Q13522,E7ENB4
|association_with_transcript=-473bp_to_ENST00000257905,ENST00000379690,NM_006741,uc001sgg.2_5end
|cluster_id=chr12:54982916..54982965,-
|coexpression_cluster_id=C63
|description=CAGE_peak_5_at_PPP1R1A_5end
|id=chr12:54982916..54982965,-
|ontology_enrichment_celltype=CL:0000136!1.94e-37!15;CL:0002521!1.27e-16!3;CL:0000325!4.37e-14!39;CL:0002535!3.09e-07!2;CL:0002617!4.69e-07!2
|ontology_enrichment_celltype_v019=CL:0000333;2.94e-11;5
|ontology_enrichment_celltype_v019_2=
|ontology_enrichment_development_v019=
|ontology_enrichment_disease=DOID:171!1.94e-19!10;DOID:3095!5.72e-09!22;DOID:2994!5.72e-09!22;DOID:3193!2.28e-07!2;DOID:962!2.28e-07!2
|ontology_enrichment_disease_v019=DOID:3193;5.56e-26;2!DOID:962;5.56e-26;2!DOID:171;6.99e-21;10!DOID:1192;8.00e-18;3!DOID:3095;4.14e-10;22!DOID:2994;4.14e-10;22!DOID:169;1.32e-09;6
|ontology_enrichment_disease_v019_2=DOID:3193,5.56e-26,2;DOID:962,5.56e-26,2;DOID:171,6.99e-21,10;DOID:1192,8.00e-18,3;DOID:3095,4.14e-10,22;DOID:2994,4.14e-10,22;DOID:169,1.32e-09,6
|ontology_enrichment_uberon=UBERON:0002190!1.27e-16!3;UBERON:0002135!5.38e-13!1;UBERON:0007190!1.09e-12!1;UBERON:0002072!2.35e-10!5;UBERON:0001013!4.59e-08!14;UBERON:0003714!2.28e-07!2;UBERON:0006955!3.09e-07!2;UBERON:0004801!3.09e-07!2;UBERON:0002133!3.93e-07!2
|ontology_enrichment_uberon_v019=UBERON:0003714;5.56e-26;2!UBERON:0002346;8.82e-14;4!UBERON:0000923;8.82e-14;4!UBERON:0010316;8.82e-14;4!UBERON:0005291;8.82e-14;4!UBERON:0002050;2.66e-11;5!UBERON:0005423;2.66e-11;5!UBERON:0000013;2.94e-11;5!UBERON:0002410;2.94e-11;5!UBERON:0000010;7.91e-07;8
|ontology_enrichment_uberon_v019_2=UBERON:0003714,5.56e-26,2;UBERON:0000013,2.94e-11,5;UBERON:0002410,2.94e-11,5;UBERON:0000010,7.91e-07,8
|phase1_expression=0,0.214100523890983,0,0,0,0,0,0.631719873426831,0.261185628199839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0,0,0,0,0.503865495708552,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.04123229368278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279282401272254,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.08803560673895,0.2506898940227,0.306345576763462,0.327872630709804,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.33946505990805,0.850299680406731,11.8978333688642,4.46915934378595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
|short_description=p5@PPP1R1A
}}

Latest revision as of 06:51, 19 September 2015

Short description:p5@PPP1R1A
Species:Human (Homo sapiens)
DPI dataset: Robust
TSS-like-by-RIKEN-classifier(Yes/No): Yes
DHS support(Yes/No): Yes
Description: CAGE_peak_5_at_PPP1R1A_5end
Coexpression cluster:C63_neuroectodermal_neuroblastoma_carcinoid_peripheral_chronic_neuroepithelioma_acute
Association with transcript: -473bp_to_ENST00000257905, ENST00000379690, NM_006741, uc001sgg.2_5end
EntrezGene:PPP1R1A
HGNC: 9286
UniProt: Q13522E7ENB4
Genome view:ZENBU


View on UCSC genome browser


Mouse over to see Genome browser image, Click image to go to Genome browser


CAGE Expression




0.0
2.5
5.0
7.5
10.0
12.5




  • Click each plot point to find sample in table


Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data