FFCP PHASE1:Hg19::chr15:78933542..78933562,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1143 | |EntrezGene=1143 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1964 | |HGNC=1964 | ||
|TSSclassifier=strong | |||
|UniProt=P30926,E9PHE8,A4FTX5 | |UniProt=P30926,E9PHE8,A4FTX5 | ||
|association_with_transcript=24bp_to_ENST00000261751,ENST00000412074,NM_000750,uc002bed.1,uc002bee.1_5end | |association_with_transcript=24bp_to_ENST00000261751,ENST00000412074,NM_000750,uc002bed.1,uc002bee.1_5end | ||
|cluster_id=chr15:78933542..78933562,- | |||
|coexpression_cluster_id=C1753 | |||
|description=CAGE_peak_2_at_CHRNB4_5end | |description=CAGE_peak_2_at_CHRNB4_5end | ||
|id=chr15:78933542..78933562,- | |id=chr15:78933542..78933562,- | ||
|ontology_enrichment_celltype=CL:0000540!7.53e-11!6;CL:0000031!7.53e-11!6;CL:0000404!7.53e-11!6;CL:0000047!1.97e-10!8;CL:0002322!6.63e-10!5 | |ontology_enrichment_celltype=CL:0000540!7.53e-11!6;CL:0000031!7.53e-11!6;CL:0000404!7.53e-11!6;CL:0000047!1.97e-10!8;CL:0002322!6.63e-10!5 | ||
|ontology_enrichment_celltype_v019=CL:0002321;1.33e-20;15!CL:0002322;1.54e-20;5!CL:0000333;5.98e-13;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,2.21e-20,5 | |||
|ontology_enrichment_development_v019=UBERON:0001045;1.31e-07;1!UBERON:0005754;1.31e-07;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:169;7.15e-11;6 | |||
|ontology_enrichment_disease_v019_2=DOID:169,7.28e-11,6 | |||
|ontology_enrichment_uberon=UBERON:0000073!6.69e-13!94;UBERON:0001016!6.69e-13!94;UBERON:0005743!9.38e-12!86;UBERON:0001017!1.06e-10!82;UBERON:0001894!3.09e-09!7;UBERON:0006222!3.09e-09!7;UBERON:0004121!5.71e-09!169;UBERON:0003075!6.75e-09!86;UBERON:0007284!6.75e-09!86;UBERON:0005409!1.61e-08!35;UBERON:0000924!1.66e-08!173;UBERON:0006601!1.66e-08!173;UBERON:0002346!3.54e-08!90;UBERON:0003296!3.70e-08!4;UBERON:0010133!3.70e-08!4;UBERON:0007023!4.57e-08!115;UBERON:0000160!6.82e-08!27;UBERON:0000059!2.18e-07!11;UBERON:0001049!3.92e-07!57;UBERON:0005068!3.92e-07!57;UBERON:0006241!3.92e-07!57;UBERON:0007135!3.92e-07!57;UBERON:0001155!9.57e-07!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0001905;1.22e-14;2!UBERON:0002757;1.22e-14;2!UBERON:0010134;1.22e-14;2!UBERON:0005408;1.22e-14;2!UBERON:0001899;1.22e-14;2!UBERON:0002370;3.66e-14;2!UBERON:0005058;3.66e-14;2!UBERON:0009113;3.66e-14;2!UBERON:0000922;3.91e-13;49!UBERON:0005409;5.12e-13;22!UBERON:0000013;5.98e-13;5!UBERON:0002410;5.98e-13;5!UBERON:0000160;1.40e-12;17!UBERON:0000059;1.10e-09;11!UBERON:0004921;4.38e-08;33!UBERON:0003296;9.57e-08;4!UBERON:0010133;9.57e-08;4!UBERON:0002784;9.57e-08;4!UBERON:0001154;1.31e-07;1!UBERON:0000998;1.31e-07;1!UBERON:0001153;1.31e-07;1!UBERON:0006868;1.31e-07;1!UBERON:0009854;1.31e-07;1!UBERON:0000010;2.16e-07;8!UBERON:0001155;5.90e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001905,1.18e-14,2;UBERON:0002757,1.18e-14,2;UBERON:0010134,1.18e-14,2;UBERON:0005408,1.18e-14,2;UBERON:0001899,1.18e-14,2;UBERON:0000013,6.10e-13,5;UBERON:0002410,6.10e-13,5;UBERON:0000160,1.32e-12,17;UBERON:0005409,1.95e-11,25;UBERON:0000059,1.03e-09,11;UBERON:0003296,9.42e-08,4;UBERON:0010133,9.42e-08,4;UBERON:0002784,9.42e-08,4;UBERON:0002370,1.49e-07,4;UBERON:0005058,1.49e-07,4;UBERON:0009113,1.49e-07,4;UBERON:0003295,1.49e-07,4;UBERON:0005562,1.49e-07,4;UBERON:0001154,1.54e-07,1;UBERON:0001153,1.54e-07,1;UBERON:0001045,1.54e-07,1;UBERON:0000998,1.75e-07,1;UBERON:0006868,1.75e-07,1;UBERON:0000010,2.19e-07,8;UBERON:0001155,5.55e-07,9 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.492484232307152,0,0,0.286235987131057,0,0,0,0,0,0,0,0,0,0,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.661743720148475,0.221729397462564,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234321431833797,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272746120590835,0,1.58565817968474,0.927708378250397,1.39432731443422,2.07322110030741,1.26160425437814,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0,0,0.171567810298526,0,0,0,0,0,0,0,2.55046890945169,0,0.288732895522148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063497894292169,0.381988425558278,0,0,0,0,0,0,1.30788020649984,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,0,0.773288812777695,0.335032530668698,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184369168541703,0,0,0,0,0.215714200818617,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0,0.184161977871793,0,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325378394664303,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121360521749513,0,0,0,0,0,0,0.140669416410513,0,0,0,0.19924798825107,1.38141957765574,1.51159648712566,0,0,0,0,0,0,0.295930216910801,0,0,0,0,1.99613798001194,0.260427761085233,0,0,0,0.254253650292766,0,0,0,9.37574972639778,0,0,0,0.110579259931225,0.295547618953547,0.219385397153973,0,0.139423744278603,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141353071433941,0.432777279484182,1.99052386215701,0.353830258013357,3.66618086960175,0,0,0,0,0.802577647298789,0.234264445725339,0,0.19566461893209,0,0,0,0.61214552326098,0.252746318513952,0.150323419414493,0.103688191397247,0,0,0,0,0,0,0,0.0979923974143777,0.261177619741208,0.17472666824203,0,0,0,0,0,0,2.71176888936639,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0,0.795229689809303,0,1.60753148465019,0.825236619583403,0.83088067605837,0,0,0,0,0,0.209818352539992,0.105600336519406,0,0,0,0,0,0,0,0,0,0.082092520749339,0,0,0,0,0,0,0.342173675768659,0,0,0,0,0,0,0,0.638341257770182,0,0,0,0,0,0,0,0,0.573409195690071,0.110929051536852,0.124192805882767,0,0,0,0,0,11.2400377393652,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194860308839388,0,0,0,0,0,0,0,0,0,0,0,0,28.7762335433216,8.08686085475114,0,28.3945059299236,0,0,0,0,0,0.23658523500376,0,0,0,0,0,0,0,0,0,0,0,0,0.235939446695481,0,0.577628330751691,0,0,0,0,0.20170506870352,0,0,0,0.147856086217045,0.135075169236789,0,0,0,1.09394961803644,0,0,0,0.127762427639595,19.8209679274966,8.4070930554706,0.606965604236632,0.455324382702595,0,0,0,0,0,0,0.111231401892069,0.156986185701028,0,0,14.6105395281519,0,0,2.00134323694638,0,0,0.347716544605159,0,0,0,0,0,0,0,1.27016115057279,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109940516745429,0.150962843566674,0.463044948647668,2.62271472604749,0,0,0.235676547101626,0.196308467114945,0,0.4226557275834,0,0.0939839179798536,0.193373663920732,0,0,0,0,1.46067277649303,0.917458566809082,0,0,0,0.872701380680755,2.1161073620616,0,0,0,0,0.546327859818478,0.126698501011437,1.52983244612973,0,0.735159196278759,0.752122617877125,0,0.535928260312357,0.829169439458779,0,0.213233981900981,0.476128862927481,2.90650094262028,2.54506328613017,0,0,0,0,0,0.134704106029175,0,0,0,0,0,0,0,0,0.406896178315738,0,1.61019034872821,0 | 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| ||
|short_description=p2@CHRNB4 | |short_description=p2@CHRNB4 | ||
}} | }} |
Latest revision as of 07:16, 19 September 2015
Short description: | p2@CHRNB4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_CHRNB4_5end |
Coexpression cluster: | C1753_neuroblastoma_pineal_rectum_retina_merkel_carcinosarcoma_eye |
Association with transcript: | 24bp_to_ENST00000261751, ENST00000412074, NM_000750, uc002bed.1, uc002bee.1_5end |
EntrezGene: | CHRNB4 |
HGNC: | 1964 |
UniProt: | P30926E9PHE8A4FTX5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 2.21e-20 | 5 |
Ontology term | p-value | n |
---|---|---|
pineal body | 1.18e-14 | 2 |
regional part of epithalamus | 1.18e-14 | 2 |
secretory circumventricular organ | 1.18e-14 | 2 |
circumventricular organ | 1.18e-14 | 2 |
epithalamus | 1.18e-14 | 2 |
sympathetic nervous system | 6.10e-13 | 5 |
autonomic nervous system | 6.10e-13 | 5 |
intestine | 1.32e-12 | 17 |
gastrointestinal system | 1.95e-11 | 25 |
large intestine | 1.03e-09 | 11 |
gland of diencephalon | 9.42e-08 | 4 |
neuroendocrine gland | 9.42e-08 | 4 |
regional part of diencephalon | 9.42e-08 | 4 |
thymus | 1.49e-07 | 4 |
hemolymphoid system gland | 1.49e-07 | 4 |
thymic region | 1.49e-07 | 4 |
pharyngeal gland | 1.49e-07 | 4 |
thymus primordium | 1.49e-07 | 4 |
vermiform appendix | 1.54e-07 | 1 |
caecum | 1.54e-07 | 1 |
midgut | 1.54e-07 | 1 |
seminal vesicle | 1.75e-07 | 1 |
seminal fluid secreting gland | 1.75e-07 | 1 |
peripheral nervous system | 2.19e-07 | 8 |
colon | 5.55e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
neuroendocrine tumor | 7.28e-11 | 6 |