FFCP PHASE1:Hg19::chr3:62228807..62228819,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5793 | |EntrezGene=5793 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9671 | |HGNC=9671 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-430bp_to_ENST00000485215_5end | |association_with_transcript=-430bp_to_ENST00000485215_5end | ||
|cluster_id=chr3:62228807..62228819,+ | |||
|coexpression_cluster_id=C361 | |coexpression_cluster_id=C361 | ||
|description=CAGE_peak_10_at_PTPRG_5end | |description=CAGE_peak_10_at_PTPRG_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0002605!2.47e-14!3;CL:0002319!4.57e-10!25;CL:0000133!3.26e-07!59 | |ontology_enrichment_celltype=CL:0002605!2.47e-14!3;CL:0002319!4.57e-10!25;CL:0000133!3.26e-07!59 | ||
|ontology_enrichment_celltype_v019=CL:0000047;1.74e-57;2!CL:0000306;2.43e-08;4!CL:0002222;2.43e-08;4!CL:0002224;2.43e-08;4 | |ontology_enrichment_celltype_v019=CL:0000047;1.74e-57;2!CL:0000306;2.43e-08;4!CL:0002222;2.43e-08;4!CL:0002224;2.43e-08;4 | ||
|ontology_enrichment_celltype_v019_2=CL:0000047,2.85e-15,8;CL:0000306,2.43e-08,4;CL:0002222,2.43e-08,4;CL:0002224,2.43e-08,4 | |||
|ontology_enrichment_development_v019=UBERON:0006215;1.12e-38;3 | |ontology_enrichment_development_v019=UBERON:0006215;1.12e-38;3 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
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|short_description=p10@PTPRG | |short_description=p10@PTPRG | ||
}} | }} |
Latest revision as of 07:55, 19 September 2015
Short description: | p10@PTPRG |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_10_at_PTPRG_5end |
Coexpression cluster: | C361_Neural_Astrocyte_Neurons_spinal_Chondrocyte_Fibroblast_sacrococcigeal |
Association with transcript: | -430bp_to_ENST00000485215_5end |
EntrezGene: | PTPRG |
HGNC: | 9671 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 2.85e-15 | 8 |
crystallin accumulating cell | 2.43e-08 | 4 |
vertebrate lens cell | 2.43e-08 | 4 |
lens epithelial cell | 2.43e-08 | 4 |
Ontology term | p-value | n |
---|---|---|
cerebellum | 6.48e-20 | 6 |
rhombic lip | 6.48e-20 | 6 |
middle frontal gyrus | 2.05e-15 | 2 |
regional part of metencephalon | 1.23e-13 | 9 |
metencephalon | 1.23e-13 | 9 |
future metencephalon | 1.23e-13 | 9 |
frontal cortex | 9.90e-11 | 3 |
segmental subdivision of hindbrain | 1.77e-10 | 12 |
hindbrain | 1.77e-10 | 12 |
presumptive hindbrain | 1.77e-10 | 12 |
segmental subdivision of nervous system | 9.51e-10 | 13 |
central nervous system | 6.78e-09 | 81 |
posterior neural tube | 1.42e-08 | 15 |
chordal neural plate | 1.42e-08 | 15 |
cuboidal epithelium | 2.43e-08 | 4 |
transparent eye structure | 2.43e-08 | 4 |
simple cuboidal epithelium | 2.43e-08 | 4 |
cranial placode | 2.43e-08 | 4 |
lens of camera-type eye | 2.43e-08 | 4 |
epithelium of lens | 2.43e-08 | 4 |
lens placode | 2.43e-08 | 4 |
lens vesicle | 2.43e-08 | 4 |
nervous system | 4.75e-08 | 89 |