FFCP PHASE1:Hg19::chr7:75864316..75864323,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=222183 | |EntrezGene=222183 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26729 | |HGNC=26729 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=16bp_to_ENST00000479294_5end | |association_with_transcript=16bp_to_ENST00000479294_5end | ||
|cluster_id=chr7:75864316..75864323,+ | |||
|coexpression_cluster_id=C24 | |||
|description=CAGE_peak_8_at_SRRM3_5end | |description=CAGE_peak_8_at_SRRM3_5end | ||
|id=chr7:75864316..75864323,+ | |id=chr7:75864316..75864323,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0003056;1.03e-17;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001905!1.05e-79!2;UBERON:0002757!1.05e-79!2;UBERON:0010134!1.05e-79!2;UBERON:0002784!1.05e-79!2;UBERON:0005408!1.05e-79!2;UBERON:0001899!1.05e-79!2;UBERON:0003296!1.48e-40!4;UBERON:0010133!1.48e-40!4;UBERON:0000966!2.34e-32!5;UBERON:0005388!2.34e-32!5;UBERON:0001802!2.34e-32!5;UBERON:0001894!1.02e-23!7;UBERON:0006222!1.02e-23!7;UBERON:0000970!1.60e-18!20;UBERON:0002104!1.10e-17!21;UBERON:0000020!3.17e-16!23;UBERON:0001032!1.38e-15!24;UBERON:0004456!1.38e-15!24;UBERON:0003056!6.50e-11!61;UBERON:0000019!2.46e-09!19;UBERON:0000047!2.46e-09!19;UBERON:0004088!2.46e-09!19;UBERON:0003072!2.46e-09!19;UBERON:0003071!2.46e-09!19;UBERON:0004128!2.46e-09!19;UBERON:0001456!1.53e-08!21;UBERON:0003075!5.87e-08!86;UBERON:0007284!5.87e-08!86;UBERON:0005743!7.11e-08!86;UBERON:0002346!1.24e-07!90;UBERON:0000073!3.39e-07!94;UBERON:0001016!3.39e-07!94 | |||
|ontology_enrichment_uberon_v019=UBERON:0001905;5.68e-99;2!UBERON:0002757;5.68e-99;2!UBERON:0010134;5.68e-99;2!UBERON:0005408;5.68e-99;2!UBERON:0001899;5.68e-99;2!UBERON:0003296;3.11e-50;4!UBERON:0010133;3.11e-50;4!UBERON:0002784;3.11e-50;4!UBERON:0001894;2.74e-29;7!UBERON:0000966;3.42e-11;5!UBERON:0005388;3.42e-11;5!UBERON:0001802;3.42e-11;5!UBERON:0000970;6.30e-11;20!UBERON:0002104;1.86e-10;21!UBERON:0000020;1.22e-09;23!UBERON:0001032;2.78e-09;24!UBERON:0004456;2.78e-09;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001905,5.68e-99,2;UBERON:0002757,5.68e-99,2;UBERON:0010134,5.68e-99,2;UBERON:0005408,5.68e-99,2;UBERON:0001899,5.68e-99,2;UBERON:0003296,3.11e-50,4;UBERON:0010133,3.11e-50,4;UBERON:0002784,3.11e-50,4;UBERON:0001894,2.74e-29,7;UBERON:0006222,2.74e-29,7;UBERON:0000970,1.86e-10,21;UBERON:0002104,1.86e-10,21;UBERON:0000966,1.44e-09,6;UBERON:0005388,1.44e-09,6;UBERON:0001802,1.44e-09,6;UBERON:0000020,2.78e-09,24;UBERON:0001032,2.78e-09,24;UBERON:0004456,2.78e-09,24;UBERON:0003056,4.28e-08,61;UBERON:0002368,9.98e-07,35 | |||
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|short_description=p8@SRRM3 | |short_description=p8@SRRM3 | ||
}} | }} |
Latest revision as of 13:08, 19 September 2015
Short description: | p8@SRRM3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_SRRM3_5end |
Coexpression cluster: | C24_pineal_eye_retina_retinoblastoma_medulloblastoma_small_cerebral |
Association with transcript: | 16bp_to_ENST00000479294_5end |
EntrezGene: | SRRM3 |
HGNC: | 26729 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pineal body | 5.68e-99 | 2 |
regional part of epithalamus | 5.68e-99 | 2 |
secretory circumventricular organ | 5.68e-99 | 2 |
circumventricular organ | 5.68e-99 | 2 |
epithalamus | 5.68e-99 | 2 |
gland of diencephalon | 3.11e-50 | 4 |
neuroendocrine gland | 3.11e-50 | 4 |
regional part of diencephalon | 3.11e-50 | 4 |
diencephalon | 2.74e-29 | 7 |
future diencephalon | 2.74e-29 | 7 |
eye | 1.86e-10 | 21 |
visual system | 1.86e-10 | 21 |
retina | 1.44e-09 | 6 |
photoreceptor array | 1.44e-09 | 6 |
posterior segment of eyeball | 1.44e-09 | 6 |
sense organ | 2.78e-09 | 24 |
sensory system | 2.78e-09 | 24 |
entire sense organ system | 2.78e-09 | 24 |
pre-chordal neural plate | 4.28e-08 | 61 |
endocrine gland | 9.98e-07 | 35 |