FFCP PHASE1:Hg19::chr12:57644952..57644978,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=246329 | |EntrezGene=246329 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28423 | |HGNC=28423 | ||
|TSSclassifier=strong | |||
|UniProt=Q96MF2,B4DUK9,G3V5D4,G3V2L9 | |UniProt=Q96MF2,B4DUK9,G3V5D4,G3V2L9 | ||
|association_with_transcript=0bp_to_ENST00000332782,ENST00000546246,ENST00000553294,ENST00000553489,ENST00000554578,ENST00000557176,NM_145064,uc001snp.2,uc001snq.2,uc009zpl.2,uc010srm.1_5end | |association_with_transcript=0bp_to_ENST00000332782,ENST00000546246,ENST00000553294,ENST00000553489,ENST00000554578,ENST00000557176,NM_145064,uc001snp.2,uc001snq.2,uc009zpl.2,uc010srm.1_5end | ||
|cluster_id=chr12:57644952..57644978,- | |||
|coexpression_cluster_id=C9 | |||
|description=CAGE_peak_1_at_STAC3_5end | |description=CAGE_peak_1_at_STAC3_5end | ||
|id=chr12:57644952..57644978,- | |id=chr12:57644952..57644978,- | ||
|ontology_enrichment_celltype=CL:0000188!7.59e-22!9;CL:0000515!3.25e-10!4;CL:0000594!3.69e-08!3;CL:0000680!3.44e-07!57;CL:0000056!3.44e-07!57;CL:0000355!3.44e-07!57 | |ontology_enrichment_celltype=CL:0000188!7.59e-22!9;CL:0000515!3.25e-10!4;CL:0000594!3.69e-08!3;CL:0000680!3.44e-07!57;CL:0000056!3.44e-07!57;CL:0000355!3.44e-07!57 | ||
|ontology_enrichment_celltype_v019=CL:0000188;1.86e-29;9!CL:0000680;8.50e-21;7!CL:0000056;1.50e-16;4!CL:0000515;6.08e-13;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000188,1.73e-29,9;CL:0000515,1.53e-16,4 | |||
|ontology_enrichment_development_v019=CL:0000515;1.50e-16;4 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001134!2.25e-11!61;UBERON:0002036!2.25e-11!61;UBERON:0003082!2.25e-11!61;UBERON:0002385!7.57e-11!63;UBERON:0001015!7.57e-11!63;UBERON:0000383!7.57e-11!63;UBERON:0007023!8.50e-11!115;UBERON:0004290!3.00e-09!70;UBERON:0000486!6.37e-09!82;UBERON:0000914!6.82e-08!83;UBERON:0002329!6.82e-08!83;UBERON:0003077!6.82e-08!83;UBERON:0003059!6.82e-08!83;UBERON:0007282!6.82e-08!83;UBERON:0009618!6.82e-08!83;UBERON:0007285!6.82e-08!83;UBERON:0008814!3.05e-07!15;UBERON:0003135!3.38e-07!11;UBERON:0003104!7.48e-07!238;UBERON:0009142!7.48e-07!238;UBERON:0000475!8.21e-07!365 | |||
|ontology_enrichment_uberon_v019=UBERON:0001134;5.75e-58;16!UBERON:0002036;5.75e-58;16!UBERON:0002385;1.02e-27;31!UBERON:0001015;1.02e-27;31!UBERON:0000383;1.02e-27;31!UBERON:0005090;1.76e-10;2!UBERON:0001630;1.76e-10;2!UBERON:0000341;2.65e-10;2!UBERON:0003127;8.25e-10;2!UBERON:0001829;1.59e-09;2!UBERON:0001723;3.03e-07;3!UBERON:0001033;3.03e-07;3!UBERON:0002204;4.11e-07;70!UBERON:0001044;6.62e-07;6!UBERON:0003293;6.62e-07;6!UBERON:0003294;6.62e-07;6!UBERON:0010047;6.62e-07;6!UBERON:0003408;6.62e-07;6!UBERON:0000167;6.62e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001134,2.17e-12,62;UBERON:0002036,2.17e-12,62;UBERON:0003082,2.17e-12,62;UBERON:0002385,6.74e-12,64;UBERON:0001015,6.74e-12,64;UBERON:0000383,6.74e-12,64;UBERON:0005090,1.76e-10,2;UBERON:0001630,1.76e-10,2;UBERON:0002329,2.13e-10,71;UBERON:0003059,2.13e-10,71;UBERON:0007282,2.13e-10,71;UBERON:0004290,2.13e-10,71;UBERON:0009618,2.13e-10,71;UBERON:0000341,2.65e-10,2;UBERON:0003077,3.29e-10,72;UBERON:0007285,3.29e-10,72;UBERON:0007524,5.04e-10,73;UBERON:0003127,8.08e-10,2;UBERON:0001829,1.62e-09,2;UBERON:0007503,3.57e-09,78;UBERON:0000486,1.99e-08,83;UBERON:0005256,2.05e-08,122;UBERON:0001723,3.03e-07,3;UBERON:0001033,3.03e-07,3;UBERON:0010056,3.03e-07,3;UBERON:0001044,6.69e-07,6;UBERON:0003293,6.69e-07,6;UBERON:0003294,6.69e-07,6;UBERON:0010047,6.69e-07,6;UBERON:0000167,6.69e-07,6 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.313454721478088,0,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.81619850790011,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103325781175765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0.414644220061482,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.40241773803446,0,8.82052268313252,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.42636905040718,4.34343920002738,3.28762116080613,3.40215830155802,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,1.00034104211935,0,0,0,0,0,0,0,0,0,0,0.0868836144680828,0.195801157462741,69.6581150336037,0,0,0,0,0,0.30239029332968,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,57.1323945106441,4.77550713055398,10.4382498813768,16.2647155531746,0.537101224341368,6.38073453222605,14.1476201510727,166.133778516812,0,0,0,0,0,0,0,0,0,0,0,0,0.372158369359667,0,0,0,0,0,0,0,0,0,0,0,0,0.975267478179181,0,0,0,0,0,0,0,0,0,0.655894752046633,0,0.6196469961995,0,0,0,0,0,0.211107635297664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.191505370132367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,16.9949487955397,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.295930216910801,0,0,0,0.185536196323703,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,307.387238915436,0,0,0,0,0,0,0,0.252746318513952,0,0,0,0,0,0,0,0,0,0,0,50.1465537854627,0,0,0,0,11.7356709950987,0,54.9133200096694,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.399358000997982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.124192805882767,0,0,0,0,0,0,0,0,0,0,0.757612021100357,1.50940741051545,3.55924488638614,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.20049976393677,0,0,1.26184898228651,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.352675943690684,0,0.128458450192919,0,0,0,0,0.0691572524642179,0,0,0,0,0,0,0,0,0,0,0,0,0.261906694481422,0,0,0.135075169236789,0,0,0,0,3.28954660114309,280.855526968341,0,0,0,0,0,0,0,0,0,0.0679697329768317,0.131545547125698,0,0,0.863424021355654,0,0,0,0,0,0.643288897589907,0,0,118.571341710359,0,0,0,0,5.16272830584333,0,0,0,0,0,0,0,0,0,877.913503226785,735.476348318154,263.277875913771,48.0853883128548,0,0,0,0,0.109940516745429,0,0,0,0,0,0,0,0,4.226557275834,0,0,0,0,0,0,0,0,27.982486287677,0,0,0,0,0,0,0,0.432626562123789,0,0,0,0.101988829741982,0,0.0918948995348449,0,1.13668047327359,0.267964130156178,0,0,406.850437467072,100.939318940626,0.129177819672012,0.434523000071005,0,4.45530107947154,21.4244220295712,474.622510415376,407.257628291484,15.4909721933551,10.9734974250795,56.8849209693683,0,0.106727345877715,0,0,14.0784565442073,0,0,0,17.7120938360103,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.313454721478088,0,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.81619850790011,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103325781175765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0.414644220061482,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.40241773803446,0,8.82052268313252,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.42636905040718,4.34343920002738,3.28762116080613,3.40215830155802,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,1.00034104211935,0,0,0,0,0,0,0,0,0,0,0.0868836144680828,0.195801157462741,69.6581150336037,0,0,0,0,0,0.30239029332968,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,57.1323945106441,4.77550713055398,10.4382498813768,16.2647155531746,0.537101224341368,6.38073453222605,14.1476201510727,166.133778516812,0,0,0,0,0,0,0,0,0,0,0,0,0.372158369359667,0,0,0,0,0,0,0,0,0,0,0,0,0.975267478179181,0,0,0,0,0,0,0,0,0,0.655894752046633,0,0.6196469961995,0,0,0,0,0,0.211107635297664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.191505370132367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,16.9949487955397,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.295930216910801,0,0,0,0.185536196323703,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,307.387238915436,0,0,0,0,0,0,0,0.252746318513952,0,0,0,0,0,0,0,0,0,0,0,50.1465537854627,0,0,0,0,11.7356709950987,0,54.9133200096694,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.399358000997982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.124192805882767,0,0,0,0,0,0,0,0,0,0,0.757612021100357,1.50940741051545,3.55924488638614,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.20049976393677,0,0,1.26184898228651,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.352675943690684,0,0.128458450192919,0,0,0,0,0.0691572524642179,0,0,0,0,0,0,0,0,0,0,0,0,0.261906694481422,0,0,0.135075169236789,0,0,0,0,3.28954660114309,280.855526968341,0,0,0,0,0,0,0,0,0,0.0679697329768317,0.131545547125698,0,0,0.863424021355654,0,0,0,0,0,0.643288897589907,0,0,118.571341710359,0,0,0,0,5.16272830584333,0,0,0,0,0,0,0,0,0,877.913503226785,735.476348318154,263.277875913771,48.0853883128548,0,0,0,0,0.109940516745429,0,0,0,0,0,0,0,0,4.226557275834,0,0,0,0,0,0,0,0,27.982486287677,0,0,0,0,0,0,0,0.432626562123789,0,0,0,0.101988829741982,0,0.0918948995348449,0,1.13668047327359,0.267964130156178,0,0,406.850437467072,100.939318940626,0.129177819672012,0.434523000071005,0,4.45530107947154,21.4244220295712,474.622510415376,407.257628291484,15.4909721933551,10.9734974250795,56.8849209693683,0,0.106727345877715,0,0,14.0784565442073,0,0,0,17.7120938360103,0 | ||
|short_description=p1@STAC3 | |short_description=p1@STAC3 | ||
}} | }} |
Latest revision as of 14:00, 19 September 2015
Short description: | p1@STAC3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_STAC3_5end |
Coexpression cluster: | C9_skeletal_diaphragm_tongue_throat_penis_heart_left |
Association with transcript: | 0bp_to_ENST00000332782, ENST00000546246, ENST00000553294, ENST00000553489, ENST00000554578, ENST00000557176, NM_145064, uc001snp.2, uc001snq.2, uc009zpl.2, uc010srm.1_5end |
EntrezGene: | STAC3 |
HGNC: | 28423 |
UniProt: | Q96MF2B4DUK9G3V5D4G3V2L9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cell of skeletal muscle | 1.73e-29 | 9 |
skeletal muscle myoblast | 1.53e-16 | 4 |
Ontology term | p-value | n |
---|---|---|
skeletal muscle tissue | 2.17e-12 | 62 |
striated muscle tissue | 2.17e-12 | 62 |
myotome | 2.17e-12 | 62 |
muscle tissue | 6.74e-12 | 64 |
musculature | 6.74e-12 | 64 |
musculature of body | 6.74e-12 | 64 |
muscle structure | 1.76e-10 | 2 |
muscle organ | 1.76e-10 | 2 |
somite | 2.13e-10 | 71 |
presomitic mesoderm | 2.13e-10 | 71 |
presumptive segmental plate | 2.13e-10 | 71 |
dermomyotome | 2.13e-10 | 71 |
trunk paraxial mesoderm | 2.13e-10 | 71 |
throat | 2.65e-10 | 2 |
paraxial mesoderm | 3.29e-10 | 72 |
presumptive paraxial mesoderm | 3.29e-10 | 72 |
dense mesenchyme tissue | 5.04e-10 | 73 |
open tracheal system trachea | 8.08e-10 | 2 |
major salivary gland | 1.62e-09 | 2 |
epithelial vesicle | 3.57e-09 | 78 |
multilaminar epithelium | 1.99e-08 | 83 |
trunk mesenchyme | 2.05e-08 | 122 |
tongue | 3.03e-07 | 3 |
gustatory system | 3.03e-07 | 3 |
future tongue | 3.03e-07 | 3 |
saliva-secreting gland | 6.69e-07 | 6 |
gland of oral region | 6.69e-07 | 6 |
gland of foregut | 6.69e-07 | 6 |
oral gland | 6.69e-07 | 6 |
oral cavity | 6.69e-07 | 6 |