FFCP PHASE1:Hg19::chr11:66139199..66139274,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3177 | |EntrezGene=3177 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11004 | |HGNC=11004 | ||
|TSSclassifier=strong | |||
|UniProt=Q14542,Q96FB2 | |UniProt=Q14542,Q96FB2 | ||
|association_with_transcript=16bp_to_ENST00000357440,ENST00000540386,NM_001532,uc001oht.2_5end | |association_with_transcript=16bp_to_ENST00000357440,ENST00000540386,NM_001532,uc001oht.2_5end | ||
|cluster_id=chr11:66139199..66139274,- | |||
|description=CAGE_peak_1_at_SLC29A2_5end | |description=CAGE_peak_1_at_SLC29A2_5end | ||
|id=chr11:66139199..66139274,- | |id=chr11:66139199..66139274,- | ||
|ontology_enrichment_celltype=CL:0000066!4.83e-12!254 | |ontology_enrichment_celltype=CL:0000066!4.83e-12!254 | ||
|ontology_enrichment_celltype_v019=CL:1000507;5.72e-07;10!CL:1000494;5.72e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,6.37e-11,253;CL:1000507,5.64e-07,10;CL:1000494,5.64e-07,10 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:0050687!5.21e-17!143;DOID:305!7.85e-17!106;DOID:162!8.50e-15!235;DOID:14566!1.95e-13!239;DOID:299!5.96e-09!25;DOID:0050686!9.48e-07!137 | |||
|ontology_enrichment_disease_v019=DOID:299;3.87e-09;25!DOID:3095;5.91e-07;22!DOID:2994;5.91e-07;22 | |||
|ontology_enrichment_disease_v019_2=DOID:0050687,1.45e-17,143;DOID:305,7.53e-17,106;DOID:162,2.62e-15,235;DOID:14566,4.19e-14,239;DOID:299,3.27e-09,25;DOID:0050686,3.37e-07,137;DOID:3095,6.64e-07,22;DOID:2994,6.64e-07,22 | |||
|ontology_enrichment_uberon=UBERON:0000064!1.43e-12!219;UBERON:0002346!8.90e-12!90;UBERON:0000481!8.85e-11!347;UBERON:0000924!2.19e-10!173;UBERON:0006601!2.19e-10!173;UBERON:0003075!3.07e-10!86;UBERON:0007284!3.07e-10!86;UBERON:0000073!1.72e-09!94;UBERON:0001016!1.72e-09!94;UBERON:0005177!3.14e-09!107;UBERON:0004121!3.54e-09!169;UBERON:0005743!4.81e-09!86;UBERON:0000063!9.66e-09!97;UBERON:0003056!1.20e-08!61;UBERON:0001049!3.40e-08!57;UBERON:0005068!3.40e-08!57;UBERON:0006241!3.40e-08!57;UBERON:0007135!3.40e-08!57;UBERON:0001017!4.31e-08!82;UBERON:0007023!7.62e-08!115;UBERON:0000153!8.71e-08!129;UBERON:0007811!8.71e-08!129;UBERON:0000033!1.19e-07!123;UBERON:0004119!1.52e-07!169;UBERON:0000925!1.52e-07!169;UBERON:0006595!1.52e-07!169;UBERON:0002616!2.52e-07!59;UBERON:0000464!3.51e-07!104;UBERON:0004921!3.70e-07!129;UBERON:0004185!3.70e-07!129;UBERON:0001007!9.05e-07!155;UBERON:0001555!9.05e-07!155;UBERON:0007026!9.05e-07!155 | |||
|ontology_enrichment_uberon_v019=UBERON:0004211;5.72e-07;10!UBERON:0009773;5.72e-07;10!UBERON:0001231;5.72e-07;10!UBERON:0004810;5.72e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0011216,2.50e-11,223;UBERON:0002346,1.10e-10,86;UBERON:0005177,3.64e-09,101;UBERON:0003075,3.67e-09,82;UBERON:0007284,3.67e-09,82;UBERON:0004121,8.24e-09,171;UBERON:0000924,8.24e-09,171;UBERON:0006601,8.24e-09,171;UBERON:0001016,3.29e-08,89;UBERON:0003056,7.79e-08,61;UBERON:0001049,8.04e-08,56;UBERON:0005068,8.04e-08,56;UBERON:0006241,8.04e-08,56;UBERON:0007135,8.04e-08,56;UBERON:0001017,8.77e-08,81;UBERON:0000073,1.17e-07,53;UBERON:0002616,1.17e-07,53;UBERON:0010371,2.84e-07,104;UBERON:0007023,3.76e-07,114;UBERON:0004810,5.64e-07,10 | |||
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| ||
|short_description=p1@SLC29A2 | |short_description=p1@SLC29A2 | ||
}} | }} |
Latest revision as of 14:20, 19 September 2015
Short description: | p1@SLC29A2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SLC29A2_5end |
Coexpression cluster: | NA |
Association with transcript: | 16bp_to_ENST00000357440, ENST00000540386, NM_001532, uc001oht.2_5end |
EntrezGene: | SLC29A2 |
HGNC: | 11004 |
UniProt: | Q14542Q96FB2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 6.37e-11 | 253 |
kidney tubule cell | 5.64e-07 | 10 |
nephron tubule epithelial cell | 5.64e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
organ system subdivision | 2.50e-11 | 223 |
neurectoderm | 1.10e-10 | 86 |
trunk region element | 3.64e-09 | 101 |
neural plate | 3.67e-09 | 82 |
presumptive neural plate | 3.67e-09 | 82 |
ectoderm-derived structure | 8.24e-09 | 171 |
ectoderm | 8.24e-09 | 171 |
presumptive ectoderm | 8.24e-09 | 171 |
nervous system | 3.29e-08 | 89 |
pre-chordal neural plate | 7.79e-08 | 61 |
neural tube | 8.04e-08 | 56 |
neural rod | 8.04e-08 | 56 |
future spinal cord | 8.04e-08 | 56 |
neural keel | 8.04e-08 | 56 |
central nervous system | 8.77e-08 | 81 |
regional part of nervous system | 1.17e-07 | 53 |
regional part of brain | 1.17e-07 | 53 |
ecto-epithelium | 2.84e-07 | 104 |
adult organism | 3.76e-07 | 114 |
nephron tubule epithelium | 5.64e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
cell type cancer | 1.45e-17 | 143 |
carcinoma | 7.53e-17 | 106 |
cancer | 2.62e-15 | 235 |
disease of cellular proliferation | 4.19e-14 | 239 |
adenocarcinoma | 3.27e-09 | 25 |
organ system cancer | 3.37e-07 | 137 |
germ cell and embryonal cancer | 6.64e-07 | 22 |
germ cell cancer | 6.64e-07 | 22 |