FFCP PHASE1:Hg19::chr15:88119982..88120003,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=145978 | |EntrezGene=145978 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=26455 | |HGNC=26455 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-156bp_to_ENST00000560153,NR_026869,uc002bmc.1_5end | |association_with_transcript=-156bp_to_ENST00000560153,NR_026869,uc002bmc.1_5end | ||
|cluster_id=chr15:88119982..88120003,+ | |||
|coexpression_cluster_id=C255 | |||
|description=CAGE_peak_2_at_LINC00052_5end | |description=CAGE_peak_2_at_LINC00052_5end | ||
|id=chr15:88119982..88120003,+ | |id=chr15:88119982..88120003,+ | ||
|ontology_enrichment_celltype=CL:0002605!8.41e-38!3;CL:0000128!7.32e-29!7;CL:0000126!7.32e-29!7;CL:0000127!7.32e-29!7;CL:0002453!7.32e-29!7;CL:0000243!4.45e-12!15;CL:0000125!4.45e-12!15;CL:0000030!4.45e-12!15;CL:0000339!4.45e-12!15;CL:0002319!1.38e-11!25;CL:0000095!7.83e-11!17;CL:0000123!7.83e-11!17;CL:0000133!4.98e-07!59 | |ontology_enrichment_celltype=CL:0002605!8.41e-38!3;CL:0000128!7.32e-29!7;CL:0000126!7.32e-29!7;CL:0000127!7.32e-29!7;CL:0002453!7.32e-29!7;CL:0000243!4.45e-12!15;CL:0000125!4.45e-12!15;CL:0000030!4.45e-12!15;CL:0000339!4.45e-12!15;CL:0002319!1.38e-11!25;CL:0000095!7.83e-11!17;CL:0000123!7.83e-11!17;CL:0000133!4.98e-07!59 | ||
|ontology_enrichment_celltype_v019=CL:0000128;5.38e-07;7!CL:0000126;5.38e-07;7!CL:0000127;5.38e-07;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0000128,5.38e-07,7;CL:0000126,5.38e-07,7;CL:0000127,5.38e-07,7;CL:0002453,5.38e-07,7 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:5093!3.98e-29!4;DOID:1612!3.98e-29!4;DOID:7!2.60e-11!39;DOID:299!2.67e-08!25 | |ontology_enrichment_disease=DOID:5093!3.98e-29!4;DOID:1612!3.98e-29!4;DOID:7!2.60e-11!39;DOID:299!2.67e-08!25 | ||
|ontology_enrichment_disease_v019=DOID:5093;2.57e-88;4!DOID:1612;2.57e-88;4!DOID:299;5.33e-15;25!DOID:7;1.05e-12;39 | |||
|ontology_enrichment_disease_v019_2=DOID:5093,2.57e-88,4;DOID:1612,2.57e-88,4;DOID:7,6.89e-17,39;DOID:299,5.33e-15,25 | |||
|ontology_enrichment_uberon=UBERON:0000310!4.82e-12!10;UBERON:0001443!5.33e-11!11 | |ontology_enrichment_uberon=UBERON:0000310!4.82e-12!10;UBERON:0001443!5.33e-11!11 | ||
|ontology_enrichment_uberon_v019=UBERON:0000310;4.93e-36;10!UBERON:0001443;7.42e-33;11!UBERON:0000915;1.22e-07;52 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000310,4.93e-36,10;UBERON:0001443,7.42e-33,11;UBERON:0000915,1.26e-07,52 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286235987131057,0.410623275218653,0.627713197974014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231860809950154,0,0,0,0,1.58040879591855,1.71697232418975,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.534120355637366,10.5872784078969,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121360521749513,0,0,0,0,0,0,0,0,0,0,0,0,0,2.35217969754956,0.246169610922139,0,0,0,0,0,0,0,0,0,0,1.30213880542617,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.191915197319445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0679697329768317,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286235987131057,0.410623275218653,0.627713197974014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231860809950154,0,0,0,0,1.58040879591855,1.71697232418975,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.534120355637366,10.5872784078969,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121360521749513,0,0,0,0,0,0,0,0,0,0,0,0,0,2.35217969754956,0.246169610922139,0,0,0,0,0,0,0,0,0,0,1.30213880542617,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.191915197319445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0679697329768317,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p2@LINC00052 | |short_description=p2@LINC00052 | ||
}} | }} |
Latest revision as of 14:59, 19 September 2015
Short description: | p2@LINC00052 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_LINC00052_5end |
Coexpression cluster: | C255_Wilms_leiomyoblastoma_kidney_adrenal_MCF7_epithelioid_Mast |
Association with transcript: | -156bp_to_ENST00000560153, NR_026869, uc002bmc.1_5end |
EntrezGene: | LINC00052 |
HGNC: | 26455 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
oligodendrocyte | 5.38e-07 | 7 |
macroglial cell | 5.38e-07 | 7 |
astrocyte | 5.38e-07 | 7 |
oligodendrocyte precursor cell | 5.38e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
breast | 4.93e-36 | 10 |
chest | 7.42e-33 | 11 |
thoracic segment of trunk | 1.26e-07 | 52 |
Ontology term | p-value | n |
---|---|---|
thoracic cancer | 2.57e-88 | 4 |
breast cancer | 2.57e-88 | 4 |
disease of anatomical entity | 6.89e-17 | 39 |
adenocarcinoma | 5.33e-15 | 25 |