FFCP PHASE1:Hg19::chr2:204398141..204398180,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=65059 | |EntrezGene=65059 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14436 | |HGNC=14436 | ||
|TSSclassifier=strong | |||
|UniProt=C9JLG4 | |UniProt=C9JLG4 | ||
|association_with_transcript=0bp_to_ENST00000428637_5end | |association_with_transcript=0bp_to_ENST00000428637_5end | ||
|cluster_id=chr2:204398141..204398180,- | |||
|coexpression_cluster_id=C80 | |||
|description=CAGE_peak_7_at_RAPH1_5end | |description=CAGE_peak_7_at_RAPH1_5end | ||
|id=chr2:204398141..204398180,- | |id=chr2:204398141..204398180,- | ||
|ontology_enrichment_celltype=CL:0000055!1.65e-07!180;CL:0000667!6.48e-07!6;CL:0000058!6.48e-07!6;CL:0000138!6.48e-07!6 | |ontology_enrichment_celltype=CL:0000055!1.65e-07!180;CL:0000667!6.48e-07!6;CL:0000058!6.48e-07!6;CL:0000138!6.48e-07!6 | ||
|ontology_enrichment_celltype_v019=CL:0000453;2.14e-13;5!CL:0000515;2.71e-12;3!CL:0000138;8.55e-11;6!CL:0001014;6.61e-10;2!CL:0001016;6.61e-10;2!CL:0000056;2.45e-09;4!CL:0000990;1.85e-07;8!CL:0000153;3.27e-07;9!CL:0000447;3.27e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000453,1.56e-13,5;CL:0000058,8.91e-11,6;CL:0000138,8.91e-11,6;CL:0001014,6.63e-10,2;CL:0001016,6.63e-10,2;CL:0000515,1.68e-09,4;CL:0000990,1.57e-07,8;CL:0000153,3.35e-07,9;CL:0000447,3.35e-07,9 | |||
|ontology_enrichment_development_v019=CL:0000515;2.45e-09;4 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000477!1.34e-07!286;UBERON:0004872!8.79e-07!84 | |||
|ontology_enrichment_uberon_v019=UBERON:0002133;1.47e-08;2!UBERON:0000948;6.26e-08;22!UBERON:0007100;7.28e-07;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002133,1.17e-08,2;UBERON:0000948,3.03e-07,24;UBERON:0005498,3.03e-07,24;UBERON:0004140,3.03e-07,24;UBERON:0009881,3.03e-07,24;UBERON:0004141,3.03e-07,24;UBERON:0003084,3.03e-07,24;UBERON:0007005,3.03e-07,24;UBERON:0004139,3.03e-07,24;UBERON:0004291,3.03e-07,24 | |||
|phase1_expression=0,0,0.422863212287913,0,0.446961094427288,0.872338524100369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.940364164434263,0.85870796139317,0,0.251085279189606,0,0,0,0,0,0.309632246632152,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.473447805734733,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34140171940727,2.30152611318355,1.0843174571537,0.50133791063589,0.724232594804119,3.1811437882044,2.91980922181582,1.89069634328136,0.221729397462564,0.43917392846563,0.327447688744282,0,0,0,0,0,0,0,0,0.39752481473341,0,0,0.56530794192401,0.419499436209906,0,0,0.775250277507987,0,0,0,0,0.488124115096339,0.367663080345869,0,0.17859945656816,0,0.112611480483322,0,0,0.549605231791222,0,0,0,0,0.25326102332916,1.05927344650575,0.860509862246441,0,1.68203280042692,0,0.24666754841716,4.97937656639626,0.404132016209064,0.490385709340376,0,0,0,0.312160076830321,0,0.149448680551801,0.23486899728753,0,0,0,0,0,0,0,2.73048408581408,0.718618141816238,0,0,0,0,0.612975591598039,1.05166641234618,0.113432183160021,0,1.06778694409284,0.423863802319124,0.300091096084402,0.92747276314595,0,0.744467425326359,0.168776332241266,0.389748020644795,0,0.368199594569197,0.161646056818812,0,0.10075209822764,0.169560592310488,0,0,0,0,0,0,0,0,0,0,0,0,0.464367928031979,0,0,0,0,0.110293972732394,0,0.237270619111097,0,0.392442930250692,0.769494313892781,2.21446636387394,0,0.4115740113314,0,17.7457048750563,0,2.95394953340702,0,0,0.171567810298526,0,0,0,0,0,0,0,0,0.117408694235822,0.144366447761074,0.925971025153221,0.190254152234598,0,0.858486162094873,0,0.234004265139238,0.148631162288728,0,0,0,0,0,0,0,0,0,0,0,0.063497894292169,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0.257207374262142,0,0,0.285955987316295,0.542621605391443,0,0,0.355391948742546,0,3.31583314765545,3.48613383440118,3.59902768255405,0,0,0,0,0,0,2.89562613335158,1.43833425785268,1.79060963239896,0,0,0,0,0,0,0,0,0.637938751653163,0,0,0,0.12269149171914,0,0,0.207970861530807,0.178428988797162,0,0.585707074963566,4.21324539618807,0,0,0,2.21243002250044,0,0,0,0,0,0,0,0,0.30239029332968,0,0.306923946576125,0,0.512556597022804,0,0.160853921143607,0,0,0.355123450626254,0.164254312027618,0,0.464841513839837,0,0,0,0,0,0,0,0,0,0,0,1.13733384070897,0,0,0,0,0,0,0,0,0,0,0,0,0,10.8193062230108,0.183138929636687,0.082509499920588,0,0,1.6068392984416,0,0,0,0,0.214840489736547,0.290033387828457,0.0852266274161009,0.623224249527161,0,0,0.127612712494584,0,0,0.94443704049192,0,0.616067160352178,0,0,0.18532421910392,0,0,0.632758849437452,0.38126038784765,0,0.42793898803392,1.27281299170375,0,0,0,0.117812402345686,0,0,0,0,0,0,0,0,0,0,0.66343897524122,0.438450885253763,0,0,0,0,0,0,0,0,0,0.211107635297664,0.329294892959902,0,0,0,0,0,10.1675304838921,0,0,0,0,0,0,0,0,0,0,0,0,0,0.962479855263359,0,0,0,0.0711418433484141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439524537815682,0,0,0,0,0,0,0,0.140669416410513,0,0,0.211125408127993,0.398495976502139,0,0,0,0,2.17727711363265,0,0,0,0.197286811273867,0,0,0,0.278304294485554,0,0,0,0,0,0,0.236387681767936,0,0,0,0,0.361789315876224,0,0,0,0.219385397153973,0,0,0.230850775511391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141353071433941,0,0,0.353830258013357,0,0,0,0,0,0,0,0,0,1.69946265673865,0,0,0,0.189559738885464,0.150323419414493,0,0,0,0,0,0,0.832048038078832,0,0,0,0,0,0,0,0,0,1.588610280447,0.225980740780532,0.274083849293502,0,0.50648636764703,0,0,0,0,0,0,0,0.14405479798815,0.248505071130865,0.235694034616795,0,0.313808538937,0.101998217636322,0,0,0,0,0,0,1.67569440763353,0.229160424011684,1.43574604915363,0,0,0,0.335917362433631,0,0,0,0,0,0,0,0,0,0,0.275078873194468,0,26.5469192030771,27.0830684095282,0.485996453264197,0,0.315222829196793,0.104909176269996,0,1.25501137532991,0,0,0,0,0,0,0,0,0,0,0,0.732761168390412,2.65013777824443,0,0.13223260174269,0.171086837884329,0,0.533937062838473,1.10043013569766,1.24271716604159,0.992332043623902,0,0,0,0,0.5013797880454,0,0,0,0,0.366078794705889,0.500763722825999,0,0,0.0620964029413835,0.138348634936231,0,0,0,0,0,0,0.149254802886874,0,0,1.89403005275089,0.754703705257725,0,0.457680136793847,5.29308233171337,0.15543720058278,0,0,0,0,0,1.06336685823198,0,0.901545653983311,4.56966254602554,0.813741466409323,0,0,0.464033759878494,0,0.400027764663154,0.343395705182793,0,7.57109389371906,0,0,0,0,0.231522474323834,2.20263034055821,0.895444205407437,0.308801447160972,0.219284049578707,0.883445729729405,0,0.506827321959218,0,0,0,0.553033744606923,1.94860308839388,1.32864840313363,0.490696182767533,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.425149840203366,0,0,0,0,0,0,0,0.321146125482298,0,0,0,0,0.138314504928436,0.645902582527404,0,0,0,0,0,1.52552838186867,0,0.596748666348824,0.150420656698515,0,0,0,0.818859587550484,0,0.270150338473579,0,0.206686796501184,0.253663240775627,0,0.548257766857182,0,0,0,0,0,0.606965604236632,0.227662191351298,0.0887023701626388,0,0.514464028312255,0,0.0657727735628491,0.118193840883968,0,0,0.157115589916002,0,0,0,0,0.428859265059938,0,0,0,0,0.62164849248911,0.85359238546975,0,0,0,0,0,0,0,0,0,0.098150233615243,0,0,0.205325613712494,2.3196288626764,0,0,0,0,0,0,0,0,0,0,0,0,0.196308467114945,0,0,0.509781344063451,6.01497075071063,4.89879948599187,0,0.178553938605658,0,0,0,0,0,0,0.339957450954573,0.436350690340377,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0.213233981900981,0.476128862927481,0,0.124149428591716,0,0.25458863311266,0.606351566874658,0.217716747896961,0,0,0.0717222053926763,0.332660356546013,0,0.320182037633146,0,0,0,0.244482888365733,0,0,0.402547587182052,0 | |phase1_expression=0,0,0.422863212287913,0,0.446961094427288,0.872338524100369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.940364164434263,0.85870796139317,0,0.251085279189606,0,0,0,0,0,0.309632246632152,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.473447805734733,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34140171940727,2.30152611318355,1.0843174571537,0.50133791063589,0.724232594804119,3.1811437882044,2.91980922181582,1.89069634328136,0.221729397462564,0.43917392846563,0.327447688744282,0,0,0,0,0,0,0,0,0.39752481473341,0,0,0.56530794192401,0.419499436209906,0,0,0.775250277507987,0,0,0,0,0.488124115096339,0.367663080345869,0,0.17859945656816,0,0.112611480483322,0,0,0.549605231791222,0,0,0,0,0.25326102332916,1.05927344650575,0.860509862246441,0,1.68203280042692,0,0.24666754841716,4.97937656639626,0.404132016209064,0.490385709340376,0,0,0,0.312160076830321,0,0.149448680551801,0.23486899728753,0,0,0,0,0,0,0,2.73048408581408,0.718618141816238,0,0,0,0,0.612975591598039,1.05166641234618,0.113432183160021,0,1.06778694409284,0.423863802319124,0.300091096084402,0.92747276314595,0,0.744467425326359,0.168776332241266,0.389748020644795,0,0.368199594569197,0.161646056818812,0,0.10075209822764,0.169560592310488,0,0,0,0,0,0,0,0,0,0,0,0,0.464367928031979,0,0,0,0,0.110293972732394,0,0.237270619111097,0,0.392442930250692,0.769494313892781,2.21446636387394,0,0.4115740113314,0,17.7457048750563,0,2.95394953340702,0,0,0.171567810298526,0,0,0,0,0,0,0,0,0.117408694235822,0.144366447761074,0.925971025153221,0.190254152234598,0,0.858486162094873,0,0.234004265139238,0.148631162288728,0,0,0,0,0,0,0,0,0,0,0,0.063497894292169,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0.257207374262142,0,0,0.285955987316295,0.542621605391443,0,0,0.355391948742546,0,3.31583314765545,3.48613383440118,3.59902768255405,0,0,0,0,0,0,2.89562613335158,1.43833425785268,1.79060963239896,0,0,0,0,0,0,0,0,0.637938751653163,0,0,0,0.12269149171914,0,0,0.207970861530807,0.178428988797162,0,0.585707074963566,4.21324539618807,0,0,0,2.21243002250044,0,0,0,0,0,0,0,0,0.30239029332968,0,0.306923946576125,0,0.512556597022804,0,0.160853921143607,0,0,0.355123450626254,0.164254312027618,0,0.464841513839837,0,0,0,0,0,0,0,0,0,0,0,1.13733384070897,0,0,0,0,0,0,0,0,0,0,0,0,0,10.8193062230108,0.183138929636687,0.082509499920588,0,0,1.6068392984416,0,0,0,0,0.214840489736547,0.290033387828457,0.0852266274161009,0.623224249527161,0,0,0.127612712494584,0,0,0.94443704049192,0,0.616067160352178,0,0,0.18532421910392,0,0,0.632758849437452,0.38126038784765,0,0.42793898803392,1.27281299170375,0,0,0,0.117812402345686,0,0,0,0,0,0,0,0,0,0,0.66343897524122,0.438450885253763,0,0,0,0,0,0,0,0,0,0.211107635297664,0.329294892959902,0,0,0,0,0,10.1675304838921,0,0,0,0,0,0,0,0,0,0,0,0,0,0.962479855263359,0,0,0,0.0711418433484141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439524537815682,0,0,0,0,0,0,0,0.140669416410513,0,0,0.211125408127993,0.398495976502139,0,0,0,0,2.17727711363265,0,0,0,0.197286811273867,0,0,0,0.278304294485554,0,0,0,0,0,0,0.236387681767936,0,0,0,0,0.361789315876224,0,0,0,0.219385397153973,0,0,0.230850775511391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141353071433941,0,0,0.353830258013357,0,0,0,0,0,0,0,0,0,1.69946265673865,0,0,0,0.189559738885464,0.150323419414493,0,0,0,0,0,0,0.832048038078832,0,0,0,0,0,0,0,0,0,1.588610280447,0.225980740780532,0.274083849293502,0,0.50648636764703,0,0,0,0,0,0,0,0.14405479798815,0.248505071130865,0.235694034616795,0,0.313808538937,0.101998217636322,0,0,0,0,0,0,1.67569440763353,0.229160424011684,1.43574604915363,0,0,0,0.335917362433631,0,0,0,0,0,0,0,0,0,0,0.275078873194468,0,26.5469192030771,27.0830684095282,0.485996453264197,0,0.315222829196793,0.104909176269996,0,1.25501137532991,0,0,0,0,0,0,0,0,0,0,0,0.732761168390412,2.65013777824443,0,0.13223260174269,0.171086837884329,0,0.533937062838473,1.10043013569766,1.24271716604159,0.992332043623902,0,0,0,0,0.5013797880454,0,0,0,0,0.366078794705889,0.500763722825999,0,0,0.0620964029413835,0.138348634936231,0,0,0,0,0,0,0.149254802886874,0,0,1.89403005275089,0.754703705257725,0,0.457680136793847,5.29308233171337,0.15543720058278,0,0,0,0,0,1.06336685823198,0,0.901545653983311,4.56966254602554,0.813741466409323,0,0,0.464033759878494,0,0.400027764663154,0.343395705182793,0,7.57109389371906,0,0,0,0,0.231522474323834,2.20263034055821,0.895444205407437,0.308801447160972,0.219284049578707,0.883445729729405,0,0.506827321959218,0,0,0,0.553033744606923,1.94860308839388,1.32864840313363,0.490696182767533,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.425149840203366,0,0,0,0,0,0,0,0.321146125482298,0,0,0,0,0.138314504928436,0.645902582527404,0,0,0,0,0,1.52552838186867,0,0.596748666348824,0.150420656698515,0,0,0,0.818859587550484,0,0.270150338473579,0,0.206686796501184,0.253663240775627,0,0.548257766857182,0,0,0,0,0,0.606965604236632,0.227662191351298,0.0887023701626388,0,0.514464028312255,0,0.0657727735628491,0.118193840883968,0,0,0.157115589916002,0,0,0,0,0.428859265059938,0,0,0,0,0.62164849248911,0.85359238546975,0,0,0,0,0,0,0,0,0,0.098150233615243,0,0,0.205325613712494,2.3196288626764,0,0,0,0,0,0,0,0,0,0,0,0,0.196308467114945,0,0,0.509781344063451,6.01497075071063,4.89879948599187,0,0.178553938605658,0,0,0,0,0,0,0.339957450954573,0.436350690340377,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0.213233981900981,0.476128862927481,0,0.124149428591716,0,0.25458863311266,0.606351566874658,0.217716747896961,0,0,0.0717222053926763,0.332660356546013,0,0.320182037633146,0,0,0,0.244482888365733,0,0,0.402547587182052,0 | ||
|short_description=p7@RAPH1 | |short_description=p7@RAPH1 | ||
}} | }} |
Latest revision as of 15:53, 19 September 2015
Short description: | p7@RAPH1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_RAPH1_5end |
Coexpression cluster: | C80_immature_migratory_CD14_Dendritic_splenic_cord_Mast |
Association with transcript: | 0bp_to_ENST00000428637_5end |
EntrezGene: | RAPH1 |
HGNC: | 14436 |
UniProt: | C9JLG4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Langerhans cell | 1.56e-13 | 5 |
chondroblast | 8.91e-11 | 6 |
chondrocyte | 8.91e-11 | 6 |
CD1a-positive Langerhans cell | 6.63e-10 | 2 |
immature CD1a-positive Langerhans cell | 6.63e-10 | 2 |
skeletal muscle myoblast | 1.68e-09 | 4 |
conventional dendritic cell | 1.57e-07 | 8 |
GAG secreting cell | 3.35e-07 | 9 |
carbohydrate secreting cell | 3.35e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
atrioventricular valve | 1.17e-08 | 2 |
heart | 3.03e-07 | 24 |
primitive heart tube | 3.03e-07 | 24 |
primary heart field | 3.03e-07 | 24 |
anterior lateral plate mesoderm | 3.03e-07 | 24 |
heart tube | 3.03e-07 | 24 |
heart primordium | 3.03e-07 | 24 |
cardiac mesoderm | 3.03e-07 | 24 |
cardiogenic plate | 3.03e-07 | 24 |
heart rudiment | 3.03e-07 | 24 |