FFCP PHASE1:Hg19::chr2:204400113..204400149,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=65059 | |EntrezGene=65059 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14436 | |HGNC=14436 | ||
|TSSclassifier=strong | |||
|UniProt=Q70E73 | |UniProt=Q70E73 | ||
|association_with_transcript=0bp_to_ENST00000319170_5end | |association_with_transcript=0bp_to_ENST00000319170_5end | ||
|cluster_id=chr2:204400113..204400149,- | |||
|description=CAGE_peak_3_at_RAPH1_5end | |description=CAGE_peak_3_at_RAPH1_5end | ||
|id=chr2:204400113..204400149,- | |id=chr2:204400113..204400149,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,8.60e-07,48;CL:0000234,8.60e-07,48 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000468!1.01e-25!659;UBERON:0000480!2.25e-24!626;UBERON:0000467!6.03e-24!625;UBERON:0000062!6.47e-17!511;UBERON:0002050!1.01e-15!605;UBERON:0005423!1.01e-15!605;UBERON:0000923!2.47e-15!604;UBERON:0005291!2.47e-15!604;UBERON:0006598!2.47e-15!604;UBERON:0002532!2.47e-15!604;UBERON:0000922!2.70e-15!612;UBERON:0004111!1.38e-12!241;UBERON:0000926!4.11e-11!448;UBERON:0004120!4.11e-11!448;UBERON:0006603!4.11e-11!448;UBERON:0000025!4.52e-11!194;UBERON:0000477!7.35e-11!286;UBERON:0003914!3.61e-09!118;UBERON:0000483!7.10e-09!309;UBERON:0000119!2.05e-08!312;UBERON:0004872!2.83e-07!84;UBERON:0000475!3.25e-07!365;UBERON:0000055!5.65e-07!69 | |ontology_enrichment_uberon=UBERON:0000468!1.01e-25!659;UBERON:0000480!2.25e-24!626;UBERON:0000467!6.03e-24!625;UBERON:0000062!6.47e-17!511;UBERON:0002050!1.01e-15!605;UBERON:0005423!1.01e-15!605;UBERON:0000923!2.47e-15!604;UBERON:0005291!2.47e-15!604;UBERON:0006598!2.47e-15!604;UBERON:0002532!2.47e-15!604;UBERON:0000922!2.70e-15!612;UBERON:0004111!1.38e-12!241;UBERON:0000926!4.11e-11!448;UBERON:0004120!4.11e-11!448;UBERON:0006603!4.11e-11!448;UBERON:0000025!4.52e-11!194;UBERON:0000477!7.35e-11!286;UBERON:0003914!3.61e-09!118;UBERON:0000483!7.10e-09!309;UBERON:0000119!2.05e-08!312;UBERON:0004872!2.83e-07!84;UBERON:0000475!3.25e-07!365;UBERON:0000055!5.65e-07!69 | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000923,2.32e-15,560;UBERON:0010316,2.32e-15,560;UBERON:0005291,2.32e-15,560;UBERON:0006598,2.32e-15,560;UBERON:0010317,2.32e-15,560;UBERON:0002532,2.32e-15,560;UBERON:0002050,5.11e-15,564;UBERON:0005423,2.77e-14,581;UBERON:0000922,3.61e-14,592;UBERON:0004111,4.59e-12,240;UBERON:0000025,1.70e-10,192;UBERON:0003914,6.57e-09,117;UBERON:0000483,6.54e-08,306;UBERON:0000926,9.32e-08,315;UBERON:0004120,9.32e-08,315;UBERON:0006603,9.32e-08,315;UBERON:0000119,1.76e-07,309;UBERON:0004872,4.30e-07,83;UBERON:0000055,9.26e-07,68 | |||
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| ||
|short_description=p3@RAPH1 | |short_description=p3@RAPH1 | ||
}} | }} |
Latest revision as of 15:56, 19 September 2015
Short description: | p3@RAPH1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_RAPH1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000319170_5end |
EntrezGene: | RAPH1 |
HGNC: | 14436 |
UniProt: | Q70E73 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 8.60e-07 | 48 |
phagocyte | 8.60e-07 | 48 |
Ontology term | p-value | n |
---|---|---|
germ layer | 2.32e-15 | 560 |
germ layer / neural crest | 2.32e-15 | 560 |
embryonic tissue | 2.32e-15 | 560 |
presumptive structure | 2.32e-15 | 560 |
germ layer / neural crest derived structure | 2.32e-15 | 560 |
epiblast (generic) | 2.32e-15 | 560 |
embryonic structure | 5.11e-15 | 564 |
developing anatomical structure | 2.77e-14 | 581 |
embryo | 3.61e-14 | 592 |
anatomical conduit | 4.59e-12 | 240 |
tube | 1.70e-10 | 192 |
epithelial tube | 6.57e-09 | 117 |
epithelium | 6.54e-08 | 306 |
mesoderm | 9.32e-08 | 315 |
mesoderm-derived structure | 9.32e-08 | 315 |
presumptive mesoderm | 9.32e-08 | 315 |
cell layer | 1.76e-07 | 309 |
splanchnic layer of lateral plate mesoderm | 4.30e-07 | 83 |
vessel | 9.26e-07 | 68 |