FFCP PHASE1:Hg19::chr2:20648556..20648582,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=388 | |EntrezGene=388 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=668 | |HGNC=668 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-38bp_to_BC062781_5end | |association_with_transcript=-38bp_to_BC062781_5end | ||
|cluster_id=chr2:20648556..20648582,+ | |||
|description=CAGE_peak_3_at_RHOB_5end | |description=CAGE_peak_3_at_RHOB_5end | ||
|id=chr2:20648556..20648582,+ | |id=chr2:20648556..20648582,+ | ||
|ontology_enrichment_celltype=CL:0002139!2.16e-07!24;CL:0002078!4.43e-07!44;CL:0000115!6.76e-07!35 | |ontology_enrichment_celltype=CL:0002139!2.16e-07!24;CL:0002078!4.43e-07!44;CL:0000115!6.76e-07!35 | ||
|ontology_enrichment_celltype_v019=CL:0002139;2.11e-07;24 | |ontology_enrichment_celltype_v019=CL:0002139;2.11e-07;24 | ||
|ontology_enrichment_celltype_v019_2=CL:0002139,2.06e-07,24;CL:0002078,7.30e-07,45;CL:0000136,9.75e-07,15 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000468!1.09e-18!659;UBERON:0000480!1.07e-15!626;UBERON:0000467!2.62e-15!625;UBERON:0007023!4.05e-14!115;UBERON:0000922!5.40e-13!612;UBERON:0002050!1.60e-12!605;UBERON:0005423!1.60e-12!605;UBERON:0000923!1.76e-12!604;UBERON:0005291!1.76e-12!604;UBERON:0006598!1.76e-12!604;UBERON:0002532!1.76e-12!604;UBERON:0000477!2.62e-12!286;UBERON:0000025!3.85e-12!194;UBERON:0004111!4.35e-12!241;UBERON:0000483!7.09e-10!309;UBERON:0003075!1.98e-09!86;UBERON:0007284!1.98e-09!86;UBERON:0000119!2.21e-09!312;UBERON:0005743!4.05e-09!86;UBERON:0000073!6.05e-09!94;UBERON:0001016!6.05e-09!94;UBERON:0002346!1.26e-08!90;UBERON:0001049!2.00e-08!57;UBERON:0005068!2.00e-08!57;UBERON:0006241!2.00e-08!57;UBERON:0007135!2.00e-08!57;UBERON:0001017!2.84e-08!82;UBERON:0000064!3.18e-08!219;UBERON:0002616!2.13e-07!59;UBERON:0000062!5.75e-07!511 | |ontology_enrichment_uberon=UBERON:0000468!1.09e-18!659;UBERON:0000480!1.07e-15!626;UBERON:0000467!2.62e-15!625;UBERON:0007023!4.05e-14!115;UBERON:0000922!5.40e-13!612;UBERON:0002050!1.60e-12!605;UBERON:0005423!1.60e-12!605;UBERON:0000923!1.76e-12!604;UBERON:0005291!1.76e-12!604;UBERON:0006598!1.76e-12!604;UBERON:0002532!1.76e-12!604;UBERON:0000477!2.62e-12!286;UBERON:0000025!3.85e-12!194;UBERON:0004111!4.35e-12!241;UBERON:0000483!7.09e-10!309;UBERON:0003075!1.98e-09!86;UBERON:0007284!1.98e-09!86;UBERON:0000119!2.21e-09!312;UBERON:0005743!4.05e-09!86;UBERON:0000073!6.05e-09!94;UBERON:0001016!6.05e-09!94;UBERON:0002346!1.26e-08!90;UBERON:0001049!2.00e-08!57;UBERON:0005068!2.00e-08!57;UBERON:0006241!2.00e-08!57;UBERON:0007135!2.00e-08!57;UBERON:0001017!2.84e-08!82;UBERON:0000064!3.18e-08!219;UBERON:0002616!2.13e-07!59;UBERON:0000062!5.75e-07!511 | ||
|ontology_enrichment_uberon_v019= | |ontology_enrichment_uberon_v019= | ||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.24e-12,114;UBERON:0000025,2.64e-12,192;UBERON:0004111,5.60e-11,240;UBERON:0003075,1.21e-10,82;UBERON:0007284,1.21e-10,82;UBERON:0002346,8.82e-10,86;UBERON:0000483,3.52e-09,306;UBERON:0000119,1.03e-08,309;UBERON:0001049,2.34e-08,56;UBERON:0005068,2.34e-08,56;UBERON:0006241,2.34e-08,56;UBERON:0007135,2.34e-08,56;UBERON:0005423,6.46e-08,581;UBERON:0000922,1.01e-07,592;UBERON:0002050,1.05e-07,564;UBERON:0000923,1.23e-07,560;UBERON:0010316,1.23e-07,560;UBERON:0005291,1.23e-07,560;UBERON:0006598,1.23e-07,560;UBERON:0010317,1.23e-07,560;UBERON:0002532,1.23e-07,560;UBERON:0010371,1.46e-07,104;UBERON:0001017,2.21e-07,81;UBERON:0000073,4.28e-07,53;UBERON:0002616,4.28e-07,53 | |||
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| ||
|short_description=p3@RHOB | |short_description=p3@RHOB | ||
}} | }} |
Latest revision as of 16:54, 19 September 2015
Short description: | p3@RHOB |
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Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_RHOB_5end |
Coexpression cluster: | NA |
Association with transcript: | -38bp_to_BC062781_5end |
EntrezGene: | RHOB |
HGNC: | 668 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of vascular tree | 2.06e-07 | 24 |
meso-epithelial cell | 7.30e-07 | 45 |
fat cell | 9.75e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
adult organism | 1.24e-12 | 114 |
tube | 2.64e-12 | 192 |
anatomical conduit | 5.60e-11 | 240 |
neural plate | 1.21e-10 | 82 |
presumptive neural plate | 1.21e-10 | 82 |
neurectoderm | 8.82e-10 | 86 |
epithelium | 3.52e-09 | 306 |
cell layer | 1.03e-08 | 309 |
neural tube | 2.34e-08 | 56 |
neural rod | 2.34e-08 | 56 |
future spinal cord | 2.34e-08 | 56 |
neural keel | 2.34e-08 | 56 |
developing anatomical structure | 6.46e-08 | 581 |
embryo | 1.01e-07 | 592 |
embryonic structure | 1.05e-07 | 564 |
germ layer | 1.23e-07 | 560 |
germ layer / neural crest | 1.23e-07 | 560 |
embryonic tissue | 1.23e-07 | 560 |
presumptive structure | 1.23e-07 | 560 |
germ layer / neural crest derived structure | 1.23e-07 | 560 |
epiblast (generic) | 1.23e-07 | 560 |
ecto-epithelium | 1.46e-07 | 104 |
central nervous system | 2.21e-07 | 81 |
regional part of nervous system | 4.28e-07 | 53 |
regional part of brain | 4.28e-07 | 53 |