FFCP PHASE1:Hg19::chr19:52693259..52693335,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr19:52693259..52693335,+
|short_description=p1@PPP2R1A
|description=CAGE_peak_1_at_PPP2R1A_5end
|association_with_transcript=0bp_to_ENST00000322088,ENST000003...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5518 | |EntrezGene=5518 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9302 | |HGNC=9302 | ||
|TSSclassifier=strong | |||
|UniProt=P30153,E9PH38,B4DDF7,B4E1Q0,F5H3X9,C9J9C1 | |UniProt=P30153,E9PH38,B4DDF7,B4E1Q0,F5H3X9,C9J9C1 | ||
|association_with_transcript=0bp_to_ENST00000322088,ENST00000391791,ENST00000423369,ENST00000436460,ENST00000444322,ENST00000454220,ENST00000490868,uc010epm.1_5end | |||
|cluster_id=chr19:52693259..52693335,+ | |||
|coexpression_cluster_id=C1671 | |||
|description=CAGE_peak_1_at_PPP2R1A_5end | |||
|id=chr19:52693259..52693335,+ | |||
|ontology_enrichment_celltype=CL:0002321!5.60e-20!248;CL:0000055!1.54e-19!180;CL:0000220!2.40e-19!246;CL:0000222!5.62e-17!119;CL:0000183!6.30e-17!59;CL:0000393!5.39e-16!60;CL:0000211!5.39e-16!60;CL:0000192!6.70e-15!42;CL:0000514!6.70e-15!42;CL:0000680!1.59e-14!57;CL:0000056!1.59e-14!57;CL:0000355!1.59e-14!57;CL:0000187!2.88e-14!54;CL:0000359!9.41e-13!32;CL:0000066!2.42e-08!254;CL:1000449!4.71e-08!16;CL:0000548!1.88e-07!679;CL:0000004!1.88e-07!679;CL:0000255!1.88e-07!679;CL:0000144!2.17e-07!625;CL:1000497!2.76e-07!18;CL:0002518!2.76e-07!18;CL:0000012!6.04e-07!682;CL:0002681!7.38e-07!13;CL:0002584!7.38e-07!13;CL:1000507!7.68e-07!12;CL:1000494!7.68e-07!12 | |||
|ontology_enrichment_celltype_v019=CL:0000359;3.08e-12;32!CL:0000192;3.34e-11;43!CL:0000393;3.38e-08;61!CL:0000211;3.38e-08;61!CL:0000187;5.79e-08;55!CL:1000449;6.17e-08;15!CL:1000497;4.01e-07;17!CL:0002518;4.01e-07;17!CL:0002681;9.51e-07;12!CL:0002584;9.51e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,1.73e-20,250;CL:0000222,1.75e-17,121;CL:0000393,3.60e-16,61;CL:0000211,3.60e-16,61;CL:0000192,4.72e-15,43;CL:0000514,4.72e-15,43;CL:0000680,1.06e-14,58;CL:0000056,1.06e-14,58;CL:0000355,1.06e-14,58;CL:0000187,1.94e-14,55;CL:0000359,9.41e-13,32;CL:0000066,3.30e-08,253;CL:1000449,6.04e-08,15;CL:1000497,3.80e-07,17;CL:0002518,3.80e-07,17;CL:0002681,9.40e-07,12;CL:0002584,9.40e-07,12 | |||
|ontology_enrichment_development_v019=CL:0000514;3.34e-11;43!CL:0000355;1.07e-07;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000119!7.03e-19!312;UBERON:0000483!2.75e-18!309;UBERON:0004290!2.79e-16!70;UBERON:0000486!3.99e-16!82;UBERON:0000914!7.00e-16!83;UBERON:0002329!7.00e-16!83;UBERON:0003077!7.00e-16!83;UBERON:0003059!7.00e-16!83;UBERON:0007282!7.00e-16!83;UBERON:0009618!7.00e-16!83;UBERON:0007285!7.00e-16!83;UBERON:0002049!8.75e-15!79;UBERON:0007798!8.75e-15!79;UBERON:0001637!3.16e-14!42;UBERON:0003509!3.16e-14!42;UBERON:0004572!3.16e-14!42;UBERON:0001134!3.74e-14!61;UBERON:0002036!3.74e-14!61;UBERON:0003082!3.74e-14!61;UBERON:0005256!1.75e-13!143;UBERON:0000481!1.77e-13!347;UBERON:0002385!3.55e-13!63;UBERON:0001015!3.55e-13!63;UBERON:0000383!3.55e-13!63;UBERON:0000475!7.79e-13!365;UBERON:0003914!9.31e-13!118;UBERON:0004872!2.23e-12!84;UBERON:0000055!4.78e-12!69;UBERON:0001981!9.64e-12!60;UBERON:0007500!9.64e-12!60;UBERON:0004537!9.64e-12!60;UBERON:0006965!9.64e-12!60;UBERON:0000477!9.18e-11!286;UBERON:0004573!1.29e-10!33;UBERON:0004571!1.29e-10!33;UBERON:0002100!1.76e-10!216;UBERON:0000025!2.04e-10!194;UBERON:0000064!1.67e-09!219;UBERON:0000468!1.90e-09!659;UBERON:0001009!3.28e-09!113;UBERON:0000490!3.49e-09!138;UBERON:0004111!1.51e-08!241;UBERON:0004535!2.30e-08!110;UBERON:0004211!4.71e-08!16;UBERON:0001285!4.71e-08!16;UBERON:0007684!4.71e-08!16;UBERON:0003220!4.71e-08!16;UBERON:0004208!4.71e-08!16;UBERON:0003104!8.66e-08!238;UBERON:0009142!8.66e-08!238;UBERON:0006555!1.37e-07!17;UBERON:0005103!1.37e-07!17;UBERON:0000083!1.37e-07!17;UBERON:0009201!1.37e-07!17;UBERON:0004819!1.37e-07!17;UBERON:0006553!1.37e-07!17;UBERON:0003074!1.37e-07!17;UBERON:0003060!1.37e-07!17;UBERON:0003103!2.68e-07!69;UBERON:0000922!5.04e-07!612;UBERON:0001225!7.38e-07!13;UBERON:0008987!7.38e-07!13;UBERON:0009773!7.68e-07!12;UBERON:0001231!7.68e-07!12;UBERON:0004810!7.68e-07!12 | |||
|ontology_enrichment_uberon_v019=UBERON:0001637;7.25e-10;42!UBERON:0003509;7.25e-10;42!UBERON:0004572;7.25e-10;42!UBERON:0004573;1.14e-09;33!UBERON:0004571;1.14e-09;33!UBERON:0003914;1.97e-08;74!UBERON:0007500;5.25e-08;56!UBERON:0001981;5.25e-08;56!UBERON:0004537;5.25e-08;56!UBERON:0006555;6.17e-08;15!UBERON:0004819;6.17e-08;15!UBERON:0001285;6.17e-08;15!UBERON:0007684;6.17e-08;15!UBERON:0002049;5.05e-07;75!UBERON:0007798;5.05e-07;75!UBERON:0000353;8.78e-07;15!UBERON:0001225;9.51e-07;12!UBERON:0008987;9.51e-07;12 | |||
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| ||
|short_description=p1@PPP2R1A | |||
}} | }} |
Latest revision as of 17:11, 19 September 2015
Short description: | p1@PPP2R1A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PPP2R1A_5end |
Coexpression cluster: | C1671_Alveolar_Mesenchymal_Renal_Pericytes_Fibroblast_Placental_Smooth |
Association with transcript: | 0bp_to_ENST00000322088, ENST00000391791, ENST00000423369, ENST00000436460, ENST00000444322, ENST00000454220, ENST00000490868, uc010epm.1_5end |
EntrezGene: | PPP2R1A |
HGNC: | 9302 |
UniProt: | P30153E9PH38B4DDF7B4E1Q0F5H3X9C9J9C1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 1.73e-20 | 250 |
mesodermal cell | 1.75e-17 | 121 |
electrically responsive cell | 3.60e-16 | 61 |
electrically active cell | 3.60e-16 | 61 |
smooth muscle cell | 4.72e-15 | 43 |
smooth muscle myoblast | 4.72e-15 | 43 |
muscle precursor cell | 1.06e-14 | 58 |
myoblast | 1.06e-14 | 58 |
multi-potent skeletal muscle stem cell | 1.06e-14 | 58 |
muscle cell | 1.94e-14 | 55 |
vascular associated smooth muscle cell | 9.41e-13 | 32 |
epithelial cell | 3.30e-08 | 253 |
epithelial cell of nephron | 6.04e-08 | 15 |
kidney cell | 3.80e-07 | 17 |
kidney epithelial cell | 3.80e-07 | 17 |
kidney cortical cell | 9.40e-07 | 12 |
renal cortical epithelial cell | 9.40e-07 | 12 |