FFCP PHASE1:Hg19::chr7:80447650..80447674,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10512 | |EntrezGene=10512 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10725 | |HGNC=10725 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=50bp_to_ENST00000459652_5end | |association_with_transcript=50bp_to_ENST00000459652_5end | ||
|cluster_id=chr7:80447650..80447674,- | |||
|coexpression_cluster_id=C1283 | |coexpression_cluster_id=C1283 | ||
|description=CAGE_peak_12_at_SEMA3C_5end | |description=CAGE_peak_12_at_SEMA3C_5end | ||
|id=chr7:80447650..80447674,- | |id=chr7:80447650..80447674,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000153;1.07e-11;9!CL:0000447;1.07e-11;9!CL:0000214;6.58e-10;3!CL:0000135;7.99e-10;3!CL:0000388;7.99e-10;3!CL:0002616;4.56e-08;1!CL:0000499;7.63e-08;28!CL:0002174;1.43e-07;1!CL:0000501;1.43e-07;1!CL:0000327;4.72e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000153,8.04e-12,9;CL:0000447,8.04e-12,9;CL:0000214,6.46e-10,3;CL:0000135,8.03e-10,3;CL:0000388,8.03e-10,3;CL:0002616,4.57e-08,1;CL:0000499,6.71e-08,28;CL:0002174,1.30e-07,1;CL:0000501,1.30e-07,1;CL:0000327,4.00e-07,15 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:193!8.74e-08!29;DOID:120!1.47e-07!27;DOID:2394!5.20e-07!14 | |ontology_enrichment_disease=DOID:193!8.74e-08!29;DOID:120!1.47e-07!27;DOID:2394!5.20e-07!14 | ||
|ontology_enrichment_disease_v019=DOID:3369;1.43e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3369,8.28e-08,1 | |||
|ontology_enrichment_uberon= | |ontology_enrichment_uberon= | ||
|ontology_enrichment_uberon_v019=UBERON:0006915;6.58e-10;3!UBERON:0007616;6.58e-10;3!UBERON:0002217;6.58e-10;3!UBERON:0002018;6.58e-10;3!UBERON:0007846;7.99e-10;3!UBERON:0000043;7.99e-10;3!UBERON:0007845;7.99e-10;3!UBERON:0002426;1.43e-07;1!UBERON:0003831;1.43e-07;1!UBERON:0003898;1.43e-07;1!UBERON:0004830;1.43e-07;1!UBERON:0003830;1.43e-07;1!UBERON:0005175;1.43e-07;1!UBERON:0001774;1.43e-07;1!UBERON:0001103;1.43e-07;1!UBERON:0004457;4.53e-07;9!UBERON:0000042;4.53e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0006915,6.46e-10,3;UBERON:0007616,6.46e-10,3;UBERON:0002217,6.46e-10,3;UBERON:0002018,6.46e-10,3;UBERON:0007846,8.03e-10,3;UBERON:0000043,8.03e-10,3;UBERON:0007845,8.03e-10,3;UBERON:0002426,7.76e-08,1;UBERON:0003831,7.76e-08,1;UBERON:0003898,7.76e-08,1;UBERON:0004830,7.76e-08,1;UBERON:0003830,7.76e-08,1;UBERON:0005175,7.76e-08,1;UBERON:0001774,7.76e-08,1;UBERON:0001103,7.76e-08,1;UBERON:0010084,7.76e-08,1 | |||
|phase1_expression=0.181678379270557,1.2846031433459,0.281908808191942,1.0007329835313,0.446961094427288,4.36169262050184,0,0,0,0,0,0,0.263766978228454,0.123766352960047,0.331397375727916,0,1.20538905604795,0,0.487932798790507,0.123121058076788,0.204000691244253,0,0,0.136874425072884,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.44575660953827,0,1.30361867064741,0,0,0,0.886917589850256,0.43917392846563,0,0,0,0,0.174129737299267,0.398873881556595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.81014194788176,0,0,0,0,0,0,0,0,0,1.49091585508596,0.506522046658319,0.264818361626438,1.14734648299525,0,0.560677600142307,0,0.49333509683432,0,0,0,0,0,0,0.312160076830321,0,0.149448680551801,0,0,0,0,0,0.103325781175765,0,0.247266929278557,0,0,0,0,0,0,0,0,0,0.179389635688862,0.213557388818567,0.423863802319124,0.300091096084402,0,0.515281080091258,0.744467425326359,0.337552664482532,0.0974370051611986,0.252433774244115,0.0920498986422993,0,1.06502877754984,0,0,0,0,0.286804595389004,0,0,0,0,0,0.36497735907583,0,0.643240938192885,0,0,0.721879481669586,0,0,0,0.220587945464788,0.217879444092406,0,0.269662616320329,0.196221465125346,0.769494313892781,0,0,0,0,0,0,0,0,0.368965315629341,0.171567810298526,0.109750285408626,1.1240175325762,0.301586917234893,0.185176890317059,0,0,0,0,0.234817388471643,0,0,0,0.790204397959275,0.858486162094873,0,0,0,0,1.34385702559088,0.283550194484773,0.268675568108545,0,0,0,0,0,0,0,0.190493682876507,0,0,0,0.102827492703324,0.300343057843917,0,0,0,0,0.129271715757778,0,0,0.26593811658487,0,0,0,0.266422179016099,0.142977993658148,0,0,0,0,0,0.602878754119172,0,0.299918973546171,0,0,0,0,0,0,0.144781306667579,0.205476322550383,0,0,0,0,0,0,0,0,0.167516265334349,1.91381625495949,0,0,0,0,0,0,0.415941723061614,1.07057393278297,0.473107245101804,0.585707074963566,0,0,0,0,0.184369168541703,0.0868836144680828,0,0,0,0,0,0,1.66435439510497,0,0.744323423456331,0.306923946576125,0.841980283299221,0.768834895534206,0,0.64341568457443,0,0.462629081407967,0.177561725313127,0,1.03850885836724,0.116210378459959,0.241718899183244,1.40354529212299,0.0920809889358963,0.229628896329213,0.546273504020151,0,0,0.0770153371044148,0,0,0.211103257785751,0,0,0,0,0,0,0.254876273045038,0,0,0,0,0,0.328014645699706,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0852266274161009,0,0.991709492165869,0.384380134730212,0,0.30347334256665,0,0.31481234683064,0,0,0,0.869932992075073,0,0.429374660225974,0,0,0.190630193923825,0,0.42793898803392,0,0.78494864019923,0,0.54907405947211,0,0,0,0,0,0.731140468893853,0,0,0,0,0,1.32687795048244,0.438450885253763,0,0.655894752046633,0,0,0.281695602532241,0,0.294747123039363,0,0,3.16661452946496,9.87884678879706,0,0,0.192444225451024,0,0,0,0.43050537267123,0,0.443430153536676,1.1486170010348,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169291777801603,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0.146508179271894,0.36408156524854,0,0.284136146806413,0,1.18785872333055,0,0,0,0.111308705022906,0,0,0,0.276283915531148,0,0.102268682502155,0,0.311039587661807,0,0.179021174675609,0,0.295930216910801,0,0,0,0,0,0,0,0,0.1137934482855,0,0,0,0.291604613383254,0.173624994933292,0,0,0,0,0,0.219385397153973,0,0,0.230850775511391,0.227884111694002,0,0,0,0.31900115973192,0,0,0,0,0,0,0,0,0,0.158936578980379,1.05499032264014,0.326465616318295,0,0,0,0.0884575645033392,0,0,0,0,0,1.60515529459758,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0.284609546029793,0.554698692052555,0.520679215005393,0,0,0,0.687944129886466,0,0,0,0,0.176512253383001,0.225980740780532,0,0.19871461170299,0,0.195551382734803,0,0,0.39961921916426,0.144090417154106,0,0,0,0,0,0,0.313808538937,0.101998217636322,0,0,0,0,1.28929632425987,0,0.279282401272254,0.458320848023367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.191915197319445,0,0.662091970365432,0,0.542999601753713,0,1.63293680054705,1.19730191562487,0,0.170388021785422,0.226624183040251,0,0,0,0.13223260174269,0,0,0,0.314408610199332,0.414239055347196,0,0,0,0,0.544017803369474,0,0.306345576763462,0,0.157054096250234,0,0,0,0,0.110929051536852,0,0,0.249960815924213,0,0,0.235265819698172,0,0,0.298509605773748,0.701139929541673,0,0.568209015825267,0.50313580350515,0.889811221596536,0.228840068396924,0.453692771289717,0.15543720058278,0.295710299979268,0,1.34940933649081,0.465788870628778,0.829412415681711,0.265841714557995,0,0.751288044986092,1.14241563650639,0.406870733204662,0.727394636810238,0.537052785212442,0.928067519756987,0.398095888698616,0.400027764663154,0,0.336749488765919,0,0,0.428883182749851,0,0.453411851024545,0,0.244736704506468,0.179088841081487,0.926404341482917,0.219284049578707,0,0,0,0,0,0,0.138258436151731,0.389720617678777,0.265729680626726,0.654261577023377,0.327609848846413,0.491545817507439,0,0,0,0,0,0.184105950251841,0.279759015438889,0.622077260032973,0,0,0,0,0,0,0,0.558644917973244,0,0,0,0.3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| ||
|short_description=p12@SEMA3C | |short_description=p12@SEMA3C | ||
}} | }} |
Latest revision as of 17:19, 19 September 2015
Short description: | p12@SEMA3C |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_12_at_SEMA3C_5end |
Coexpression cluster: | C1283_Synoviocyte_tenocyte_Fibroblast_Adipocyte_Ewing_Chondrocyte_Neurons |
Association with transcript: | 50bp_to_ENST00000459652_5end |
EntrezGene: | SEMA3C |
HGNC: | 10725 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
GAG secreting cell | 8.04e-12 | 9 |
carbohydrate secreting cell | 8.04e-12 | 9 |
synovial cell | 6.46e-10 | 3 |
fibrocyte | 8.03e-10 | 3 |
tendon cell | 8.03e-10 | 3 |
perirenal adipocyte cell | 4.57e-08 | 1 |
stromal cell | 6.71e-08 | 28 |
follicular cell of ovary | 1.30e-07 | 1 |
granulosa cell | 1.30e-07 | 1 |
extracellular matrix secreting cell | 4.00e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
stratified squamous epithelium | 6.46e-10 | 3 |
layer of synovial tissue | 6.46e-10 | 3 |
synovial joint | 6.46e-10 | 3 |
synovial membrane of synovial joint | 6.46e-10 | 3 |
dense regular connective tissue | 8.03e-10 | 3 |
tendon | 8.03e-10 | 3 |
regular connective tissue | 8.03e-10 | 3 |
chest muscle | 7.76e-08 | 1 |
respiratory system muscle | 7.76e-08 | 1 |
skeletal muscle of trunk | 7.76e-08 | 1 |
respiratory system skeletal muscle | 7.76e-08 | 1 |
thoracic segment muscle | 7.76e-08 | 1 |
chest organ | 7.76e-08 | 1 |
muscle of trunk | 7.76e-08 | 1 |
diaphragm | 7.76e-08 | 1 |
future diaphragm | 7.76e-08 | 1 |
Ontology term | p-value | n |
---|---|---|
peripheral primitive neuroectodermal tumor | 8.28e-08 | 1 |