FFCP PHASE1:Hg19::chr18:47087361..47087374,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9388 | |EntrezGene=9388 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6623 | |HGNC=6623 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=292bp_to_AK125344_5end | |association_with_transcript=292bp_to_AK125344_5end | ||
|cluster_id=chr18:47087361..47087374,+ | |||
|coexpression_cluster_id=C113 | |coexpression_cluster_id=C113 | ||
|description=CAGE_peak_3_at_LIPG_5end | |description=CAGE_peak_3_at_LIPG_5end | ||
|id=chr18:47087361..47087374,+ | |id=chr18:47087361..47087374,+ | ||
|ontology_enrichment_celltype=CL:0002139!1.25e-13!24;CL:0000115!1.97e-12!35;CL:0002078!2.57e-10!44;CL:0000071!2.42e-08!18;CL:0002546!2.42e-08!18;CL:0000213!9.72e-08!57;CL:0000215!9.72e-08!57;CL:0005020!1.70e-07!6;CL:0002138!1.70e-07!6;CL:0005022!1.70e-07!6;CL:1000413!8.57e-07!9 | |ontology_enrichment_celltype=CL:0002139!1.25e-13!24;CL:0000115!1.97e-12!35;CL:0002078!2.57e-10!44;CL:0000071!2.42e-08!18;CL:0002546!2.42e-08!18;CL:0000213!9.72e-08!57;CL:0000215!9.72e-08!57;CL:0005020!1.70e-07!6;CL:0002138!1.70e-07!6;CL:0005022!1.70e-07!6;CL:1000413!8.57e-07!9 | ||
|ontology_enrichment_celltype_v019=CL:0002605;5.80e-13;3!CL:0000115;2.57e-10;36!CL:1000413;1.08e-09;9!CL:0002139;2.50e-09;24!CL:0000071;2.74e-08;18!CL:0002544;6.48e-07;6!CL:0002548;6.48e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002605,1.00e-12,3;CL:0000115,9.18e-12,36;CL:1000413,9.86e-10,9;CL:0002139,2.13e-09,24;CL:0002078,2.91e-09,45;CL:0000071,2.38e-08,18;CL:0002546,2.38e-08,18;CL:0000213,5.12e-07,58;CL:0000215,5.12e-07,58;CL:0002544,5.93e-07,6;CL:0002548,7.75e-07,6 | |||
|ontology_enrichment_development_v019=UBERON:0007123;1.69e-08;5!CL:0002546;2.74e-08;18 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:3347;9.82e-11;1!DOID:3371;2.38e-10;1!DOID:4549;2.38e-10;1!DOID:5861;2.38e-10;1!DOID:6496;2.38e-10;1!DOID:201;4.87e-07;6!DOID:0060100;4.87e-07;6 | |||
|ontology_enrichment_disease_v019_2=DOID:3347,1.08e-10,1;DOID:3371,1.19e-10,1;DOID:4549,1.19e-10,1;DOID:5861,1.19e-10,1;DOID:6496,1.19e-10,1;DOID:201,4.00e-07,6;DOID:0060100,4.00e-07,6 | |||
|ontology_enrichment_uberon=UBERON:0000055!6.75e-10!69;UBERON:0000483!1.46e-09!309;UBERON:0004111!2.81e-09!241;UBERON:0000119!3.09e-09!312;UBERON:0002049!1.19e-08!79;UBERON:0007798!1.19e-08!79;UBERON:0003914!1.29e-08!118;UBERON:0000025!1.30e-08!194;UBERON:0001986!2.42e-08!18;UBERON:0004638!2.42e-08!18;UBERON:0004852!2.42e-08!18;UBERON:0000477!1.43e-07!286;UBERON:0004872!1.99e-07!84;UBERON:0001981!2.70e-07!60;UBERON:0007500!2.70e-07!60;UBERON:0004537!2.70e-07!60;UBERON:0006965!2.70e-07!60;UBERON:0004535!4.79e-07!110;UBERON:0003915!8.57e-07!9;UBERON:0004700!8.57e-07!9;UBERON:0001917!8.57e-07!9 | |ontology_enrichment_uberon=UBERON:0000055!6.75e-10!69;UBERON:0000483!1.46e-09!309;UBERON:0004111!2.81e-09!241;UBERON:0000119!3.09e-09!312;UBERON:0002049!1.19e-08!79;UBERON:0007798!1.19e-08!79;UBERON:0003914!1.29e-08!118;UBERON:0000025!1.30e-08!194;UBERON:0001986!2.42e-08!18;UBERON:0004638!2.42e-08!18;UBERON:0004852!2.42e-08!18;UBERON:0000477!1.43e-07!286;UBERON:0004872!1.99e-07!84;UBERON:0001981!2.70e-07!60;UBERON:0007500!2.70e-07!60;UBERON:0004537!2.70e-07!60;UBERON:0006965!2.70e-07!60;UBERON:0004535!4.79e-07!110;UBERON:0003915!8.57e-07!9;UBERON:0004700!8.57e-07!9;UBERON:0001917!8.57e-07!9 | ||
|ontology_enrichment_uberon_v019=UBERON:0003915;1.08e-09;9!UBERON:0004700;1.08e-09;9!UBERON:0001917;1.08e-09;9!UBERON:0002046;1.69e-08;5!UBERON:0004638;2.74e-08;18!UBERON:0001986;2.74e-08;18!UBERON:0004852;2.74e-08;18!UBERON:0000487;8.35e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003915,9.86e-10,9;UBERON:0004700,9.86e-10,9;UBERON:0001917,9.86e-10,9;UBERON:0002046,1.63e-08,5;UBERON:0004117,1.63e-08,5;UBERON:0007689,1.63e-08,5;UBERON:0007123,1.63e-08,5;UBERON:0003091,1.63e-08,5;UBERON:0004638,2.38e-08,18;UBERON:0001986,2.38e-08,18;UBERON:0004852,2.38e-08,18;UBERON:0000487,7.44e-07,22 | |||
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| ||
|short_description=p3@LIPG | |short_description=p3@LIPG | ||
}} | }} |
Latest revision as of 17:42, 19 September 2015
Short description: | p3@LIPG |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_LIPG_5end |
Coexpression cluster: | C113_thyroid_throat_lung_lymph_small_colon_trachea |
Association with transcript: | 292bp_to_AK125344_5end |
EntrezGene: | LIPG |
HGNC: | 6623 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
astrocyte of the cerebral cortex | 1.00e-12 | 3 |
endothelial cell | 9.18e-12 | 36 |
endothelial cell of artery | 9.86e-10 | 9 |
endothelial cell of vascular tree | 2.13e-09 | 24 |
meso-epithelial cell | 2.91e-09 | 45 |
blood vessel endothelial cell | 2.38e-08 | 18 |
embryonic blood vessel endothelial progenitor cell | 2.38e-08 | 18 |
lining cell | 5.12e-07 | 58 |
barrier cell | 5.12e-07 | 58 |
aortic endothelial cell | 5.93e-07 | 6 |
cardiac fibroblast | 7.75e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
endothelial tube | 9.86e-10 | 9 |
arterial system endothelium | 9.86e-10 | 9 |
endothelium of artery | 9.86e-10 | 9 |
thyroid gland | 1.63e-08 | 5 |
pharyngeal pouch | 1.63e-08 | 5 |
thyroid diverticulum | 1.63e-08 | 5 |
pharyngeal pouch 2 | 1.63e-08 | 5 |
thyroid primordium | 1.63e-08 | 5 |
blood vessel endothelium | 2.38e-08 | 18 |
endothelium | 2.38e-08 | 18 |
cardiovascular system endothelium | 2.38e-08 | 18 |
simple squamous epithelium | 7.44e-07 | 22 |
Ontology term | p-value | n |
---|---|---|
osteosarcoma | 1.08e-10 | 1 |
chondrosarcoma | 1.19e-10 | 1 |
extraosseous chondrosarcoma | 1.19e-10 | 1 |
myxoid chondrosarcoma | 1.19e-10 | 1 |
extraskeletal myxoid chondrosarcoma | 1.19e-10 | 1 |
connective tissue cancer | 4.00e-07 | 6 |
musculoskeletal system cancer | 4.00e-07 | 6 |