FFCP PHASE1:Hg19::chr18:47340320..47340479,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=677769 | |EntrezGene=677769 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=32574 | |HGNC=32574 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_NR_003003,uc002ldy.1_5end | |association_with_transcript=0bp_to_NR_003003,uc002ldy.1_5end | ||
|cluster_id=chr18:47340320..47340479,+ | |||
|coexpression_cluster_id=C2461 | |coexpression_cluster_id=C2461 | ||
|description=CAGE_peak_1_at_SCARNA17_5end | |description=CAGE_peak_1_at_SCARNA17_5end | ||
|id=chr18:47340320..47340479,+ | |id=chr18:47340320..47340479,+ | ||
|ontology_enrichment_celltype=CL:0000791;5.08e-13;18!CL:0000789;5.08e-13;18!CL:0002419;5.08e-13;18!CL:0000625;7.10e-09;11!CL:0000084;6.74e-08;25 | |ontology_enrichment_celltype=CL:0000791!5.09e-13!18;CL:0000789!5.09e-13!18;CL:0002420!5.09e-13!18;CL:0002419!5.09e-13!18;CL:0000790!5.09e-13!18;CL:0000625!7.10e-09!11;CL:0000084!6.76e-08!25;CL:0000827!6.76e-08!25 | ||
| | |ontology_enrichment_celltype_v019=CL:0000791;5.08e-13;18!CL:0000789;5.08e-13;18!CL:0002419;5.08e-13;18!CL:0000625;7.10e-09;11!CL:0000084;6.74e-08;25 | ||
|ontology_enrichment_celltype_v019_2=CL:0000791,5.09e-13,18;CL:0000789,5.09e-13,18;CL:0002420,5.09e-13,18;CL:0002419,5.09e-13,18;CL:0000790,5.09e-13,18;CL:0000625,7.10e-09,11;CL:0000084,6.74e-08,25;CL:0000827,6.74e-08,25 | |||
|ontology_enrichment_development_v019=CL:0000790;5.08e-13;18 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_uberon=UBERON:0007023;1.53e-08;114!UBERON:0000178;2.90e-08;15!UBERON:0000179;2.90e-08;15!UBERON:0000463;2.90e-08;15 | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!6.78e-31!115;UBERON:0001049!6.90e-11!57;UBERON:0005068!6.90e-11!57;UBERON:0006241!6.90e-11!57;UBERON:0007135!6.90e-11!57;UBERON:0003080!1.01e-08!42;UBERON:0002616!1.02e-08!59;UBERON:0002780!1.85e-08!41;UBERON:0001890!1.85e-08!41;UBERON:0006240!1.85e-08!41;UBERON:0000178!2.91e-08!15;UBERON:0000179!2.91e-08!15;UBERON:0000463!2.91e-08!15;UBERON:0001017!8.13e-08!82;UBERON:0000955!2.09e-07!69;UBERON:0006238!2.09e-07!69;UBERON:0005743!2.21e-07!86;UBERON:0002346!3.52e-07!90;UBERON:0003075!4.36e-07!86;UBERON:0007284!4.36e-07!86;UBERON:0001893!9.42e-07!34;UBERON:0002020!9.48e-07!34;UBERON:0003528!9.48e-07!34 | |||
|ontology_enrichment_uberon_v019=UBERON:0007023;1.53e-08;114!UBERON:0000178;2.90e-08;15!UBERON:0000179;2.90e-08;15!UBERON:0000463;2.90e-08;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,9.48e-31,114;UBERON:0001049,1.28e-10,56;UBERON:0005068,1.28e-10,56;UBERON:0006241,1.28e-10,56;UBERON:0007135,1.28e-10,56;UBERON:0000073,8.94e-10,53;UBERON:0002616,8.94e-10,53;UBERON:0002780,1.85e-08,41;UBERON:0001890,1.85e-08,41;UBERON:0003080,1.85e-08,41;UBERON:0006240,1.85e-08,41;UBERON:0000178,2.91e-08,15;UBERON:0000179,2.91e-08,15;UBERON:0000463,2.91e-08,15;UBERON:0001017,1.36e-07,81;UBERON:0002346,1.36e-07,86;UBERON:0003075,1.65e-07,82;UBERON:0007284,1.65e-07,82;UBERON:0000955,3.53e-07,68;UBERON:0006238,3.53e-07,68;UBERON:0001893,9.42e-07,34;UBERON:0003528,9.48e-07,34;UBERON:0002020,9.48e-07,34 | |||
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| ||
|short_description=p1@SCARNA17 | |short_description=p1@SCARNA17 | ||
}} | }} |
Latest revision as of 17:57, 19 September 2015
Short description: | p1@SCARNA17 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SCARNA17_5end |
Coexpression cluster: | C2461_CD8_CD4_Natural_Basophils_CD34_Mesenchymal_uterus |
Association with transcript: | 0bp_to_NR_003003, uc002ldy.1_5end |
EntrezGene: | SCARNA17 |
HGNC: | 32574 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 5.09e-13 | 18 |
alpha-beta T cell | 5.09e-13 | 18 |
immature T cell | 5.09e-13 | 18 |
mature T cell | 5.09e-13 | 18 |
immature alpha-beta T cell | 5.09e-13 | 18 |
CD8-positive, alpha-beta T cell | 7.10e-09 | 11 |
T cell | 6.74e-08 | 25 |
pro-T cell | 6.74e-08 | 25 |
Ontology term | p-value | n |
---|---|---|
adult organism | 9.48e-31 | 114 |
neural tube | 1.28e-10 | 56 |
neural rod | 1.28e-10 | 56 |
future spinal cord | 1.28e-10 | 56 |
neural keel | 1.28e-10 | 56 |
regional part of nervous system | 8.94e-10 | 53 |
regional part of brain | 8.94e-10 | 53 |
regional part of forebrain | 1.85e-08 | 41 |
forebrain | 1.85e-08 | 41 |
anterior neural tube | 1.85e-08 | 41 |
future forebrain | 1.85e-08 | 41 |
blood | 2.91e-08 | 15 |
haemolymphatic fluid | 2.91e-08 | 15 |
organism substance | 2.91e-08 | 15 |
central nervous system | 1.36e-07 | 81 |
neurectoderm | 1.36e-07 | 86 |
neural plate | 1.65e-07 | 82 |
presumptive neural plate | 1.65e-07 | 82 |
brain | 3.53e-07 | 68 |
future brain | 3.53e-07 | 68 |
telencephalon | 9.42e-07 | 34 |
brain grey matter | 9.48e-07 | 34 |
gray matter | 9.48e-07 | 34 |