FFCP PHASE1:Hg19::chr18:52989447..52989460,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6925 | |EntrezGene=6925 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11634 | |HGNC=11634 | ||
|TSSclassifier=strong | |||
|UniProt=G0LNU9,P15884,G0LNV0 | |UniProt=G0LNU9,P15884,G0LNV0 | ||
|association_with_transcript=-357bp_to_NM_001243234,NM_001243235_5end | |association_with_transcript=-357bp_to_NM_001243234,NM_001243235_5end | ||
|cluster_id=chr18:52989447..52989460,- | |||
|description=CAGE_peak_50_at_TCF4_5end | |description=CAGE_peak_50_at_TCF4_5end | ||
|id=chr18:52989447..52989460,- | |id=chr18:52989447..52989460,- | ||
|ontology_enrichment_celltype=CL:0000333;6.94e-20;5!CL:0000540;6.26e-08;6!CL:0000404;6.26e-08;6!CL:0002321;5.52e-07;15 | |ontology_enrichment_celltype= | ||
| | |ontology_enrichment_celltype_v019=CL:0000333;6.94e-20;5!CL:0000540;6.26e-08;6!CL:0000404;6.26e-08;6!CL:0002321;5.52e-07;15 | ||
|ontology_enrichment_disease=DOID:169;1.12e-16;6!DOID:171;3.11e-10;10 | |ontology_enrichment_celltype_v019_2=CL:0000047,1.49e-12,8;CL:0000540,5.55e-08,6;CL:0000031,5.55e-08,6;CL:0000404,5.55e-08,6;CL:0000133,7.35e-08,59 | ||
|ontology_enrichment_uberon=UBERON:0001905;4.14e-22;2!UBERON:0002757;4.14e-22;2!UBERON:0010134;4.14e-22;2!UBERON:0005408;4.14e-22;2!UBERON:0001899;4.14e-22;2!UBERON:0000013;6.94e-20;5!UBERON:0002410;6.94e-20;5!UBERON:0005795;1.13e-11;1!UBERON:0003296;1.51e-11;4!UBERON:0010133;1.51e-11;4!UBERON:0002784;1.51e-11;4!UBERON:0000010;2.60e-11;8!UBERON:0001894;5.76e-07;7!UBERON:0001954;9.96e-07;2!UBERON:0003022;9.96e-07;2!UBERON:0002421;9.96e-07;2!UBERON:0002600;9.96e-07;2 | |ontology_enrichment_development_v019=CL:0000031;6.26e-08;6 | ||
|ontology_enrichment_disease=DOID:171!5.41e-08!10 | |||
|ontology_enrichment_disease_v019=DOID:169;1.12e-16;6!DOID:171;3.11e-10;10 | |||
|ontology_enrichment_disease_v019_2=DOID:169,1.18e-16,6;DOID:171,3.21e-10,10 | |||
|ontology_enrichment_uberon=UBERON:0000073!3.07e-21!94;UBERON:0001016!3.07e-21!94;UBERON:0001017!5.02e-19!82;UBERON:0005743!7.97e-19!86;UBERON:0007023!6.63e-18!115;UBERON:0002346!5.52e-17!90;UBERON:0000924!1.13e-16!173;UBERON:0006601!1.13e-16!173;UBERON:0001049!1.63e-15!57;UBERON:0005068!1.63e-15!57;UBERON:0006241!1.63e-15!57;UBERON:0007135!1.63e-15!57;UBERON:0003075!5.18e-15!86;UBERON:0007284!5.18e-15!86;UBERON:0004121!5.26e-15!169;UBERON:0002616!1.62e-13!59;UBERON:0000955!2.90e-13!69;UBERON:0006238!2.90e-13!69;UBERON:0002780!3.39e-13!41;UBERON:0001890!3.39e-13!41;UBERON:0006240!3.39e-13!41;UBERON:0003080!9.57e-13!42;UBERON:0000153!2.47e-11!129;UBERON:0007811!2.47e-11!129;UBERON:0003056!9.85e-10!61;UBERON:0000033!2.02e-09!123;UBERON:0001894!5.74e-09!7;UBERON:0006222!5.74e-09!7;UBERON:0003296!2.21e-08!4;UBERON:0010133!2.21e-08!4;UBERON:0001893!7.90e-08!34;UBERON:0001869!2.19e-07!32;UBERON:0002791!3.60e-07!33;UBERON:0002020!8.12e-07!34;UBERON:0003528!8.12e-07!34;UBERON:0000013!8.32e-07!5;UBERON:0002410!8.32e-07!5 | |||
|ontology_enrichment_uberon_v019=UBERON:0001905;4.14e-22;2!UBERON:0002757;4.14e-22;2!UBERON:0010134;4.14e-22;2!UBERON:0005408;4.14e-22;2!UBERON:0001899;4.14e-22;2!UBERON:0000013;6.94e-20;5!UBERON:0002410;6.94e-20;5!UBERON:0005795;1.13e-11;1!UBERON:0003296;1.51e-11;4!UBERON:0010133;1.51e-11;4!UBERON:0002784;1.51e-11;4!UBERON:0000010;2.60e-11;8!UBERON:0001894;5.76e-07;7!UBERON:0001954;9.96e-07;2!UBERON:0003022;9.96e-07;2!UBERON:0002421;9.96e-07;2!UBERON:0002600;9.96e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001905,5.41e-22,2;UBERON:0002757,5.41e-22,2;UBERON:0010134,5.41e-22,2;UBERON:0005408,5.41e-22,2;UBERON:0001899,5.41e-22,2;UBERON:0000013,7.41e-20,5;UBERON:0002410,7.41e-20,5;UBERON:0001016,2.60e-12,89;UBERON:0003296,1.73e-11,4;UBERON:0010133,1.73e-11,4;UBERON:0002784,1.73e-11,4;UBERON:0000010,2.69e-11,8;UBERON:0004121,2.82e-08,171;UBERON:0000924,2.82e-08,171;UBERON:0006601,2.82e-08,171;UBERON:0001017,3.42e-07,81;UBERON:0001894,6.20e-07,7;UBERON:0006222,6.20e-07,7 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821005894499457,0,0,0,0,0,0,0,0,0.284338464974843,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238490624305342,0,0,0.198762407366705,0,0.347140501607594,0,0,0,0,0,0.35576626268671,1.00416183829401,2.41697590265488,0,0,0,0,0.17859945656816,0.44905874525234,0.112611480483322,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.204154171254893,0,0,0,0,0,0,0.168336113954066,0,0,0,0,0,0.113432183160021,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10075209822764,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117408694235822,0.577465791044295,0,0.570762456703795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325736184293735,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.508189248444927,2.60279707715243,2.31986643833309,0.837581326671744,1.91381625495949,0,0,0,0,0,0,0,0,0,0,0,0,1.03473071292505,0,0,0,0,0.343143423810856,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164254312027618,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215915916102139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0890320356467374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.379473173765715,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.185803175125719,0.144269212976445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.586032717087576,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123084805461069,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0.694499979733169,0,0.120596438625408,0,0.442317039724898,0.295547618953547,0.438770794307945,0,0,0.153900517007594,0,0,0,0,0,0,0,0,0,0.166211681900156,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0.611030144933625,0,0,0,0.202203398942031,0.802577647298789,0.234264445725339,0,0,0,0,0,1.22429104652196,0.189559738885464,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0.0882561266915003,0.677942222341597,0,0,0.0633107959558787,0,0,0.213452994739353,0,0,0,0,0,0,0,0.271808412147228,0.313808538937,0,0,0,0.410716136675979,0,0.429765441419957,0,0.558564802544508,0.229160424011684,0,0,0,0,0.806201669840715,0,0,0,0,0,0,0,3.18091875923721,0.817220436669454,0,0,0,0,0,0.121499113316049,0,0,0.104909176269996,0,0,0,0,0,0,0.542999601753713,0,0,0,0,0,0,0,0,0,0.13223260174269,0,0,0.106787412567695,0.157204305099666,0,0,0,0.487170393523584,0,0,0.2506898940227,0,0,0,0,0,0.250381861413,0,0.332787154610557,0.0620964029413835,0,0,0,0,0,1.40500471742064,0.869526171664951,0.149254802886874,0,0,0,0.50313580350515,0,0,0,0.15543720058278,0,0,0,0,0,0,0.521745061811734,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.622077260032973,3.32525365389494,2.26432103933032,0.629063767423586,2.51182167841632,0,0.212574920101683,0.123935764259002,0,0,0,0,0,0,0.0642292250964595,0,0,0.205116364240755,0.504143392443436,0.0691572524642179,0.161475645631851,0,0,0,0,0,0.381382095467167,0,0,0,0,0,0,0,0,0.0675375846183947,0,0.206686796501184,0,1.09394961803644,0,0.496211178389294,0.175871244359621,0,3.74991285114801,1.00885116665647,0.606965604236632,0.91064876540519,0,0,0,0.135939465953663,0,0,0,0.078493092850514,0,0,0.913158720509496,0,0,0.214429632529969,0,0,0.521574816907738,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205325613712494,0,0.485710993059139,0,5.96852325484105,0,0.22589216407792,0,0,0,0,0,0,0,0.196308467114945,0,0,0,0,0.0644578879735772,0,0,0,0,0,0,0,0,0,1.30905207102113,0,0,0,0,0,0,0,0,0,0,0,0.151557396436479,0,0,0.103432995861895,0.426467963801962,0.23806443146374,0.129177819672012,0.124149428591716,0,0,0.606351566874658,0,1.02669990325584,0.134704106029175,0.143444410785353,0.332660356546013,0,0,0,0,0,0.244482888365733,1.62758471326295,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821005894499457,0,0,0,0,0,0,0,0,0.284338464974843,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238490624305342,0,0,0.198762407366705,0,0.347140501607594,0,0,0,0,0,0.35576626268671,1.00416183829401,2.41697590265488,0,0,0,0,0.17859945656816,0.44905874525234,0.112611480483322,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.204154171254893,0,0,0,0,0,0,0.168336113954066,0,0,0,0,0,0.113432183160021,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10075209822764,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117408694235822,0.577465791044295,0,0.570762456703795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325736184293735,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.508189248444927,2.60279707715243,2.31986643833309,0.837581326671744,1.91381625495949,0,0,0,0,0,0,0,0,0,0,0,0,1.03473071292505,0,0,0,0,0.343143423810856,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164254312027618,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215915916102139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0890320356467374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.379473173765715,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.185803175125719,0.144269212976445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.586032717087576,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123084805461069,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0.694499979733169,0,0.120596438625408,0,0.442317039724898,0.295547618953547,0.438770794307945,0,0,0.153900517007594,0,0,0,0,0,0,0,0,0,0.166211681900156,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0.611030144933625,0,0,0,0.202203398942031,0.802577647298789,0.234264445725339,0,0,0,0,0,1.22429104652196,0.189559738885464,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0.0882561266915003,0.677942222341597,0,0,0.0633107959558787,0,0,0.213452994739353,0,0,0,0,0,0,0,0.271808412147228,0.313808538937,0,0,0,0.410716136675979,0,0.429765441419957,0,0.558564802544508,0.229160424011684,0,0,0,0,0.806201669840715,0,0,0,0,0,0,0,3.18091875923721,0.817220436669454,0,0,0,0,0,0.121499113316049,0,0,0.104909176269996,0,0,0,0,0,0,0.542999601753713,0,0,0,0,0,0,0,0,0,0.13223260174269,0,0,0.106787412567695,0.157204305099666,0,0,0,0.487170393523584,0,0,0.2506898940227,0,0,0,0,0,0.250381861413,0,0.332787154610557,0.0620964029413835,0,0,0,0,0,1.40500471742064,0.869526171664951,0.149254802886874,0,0,0,0.50313580350515,0,0,0,0.15543720058278,0,0,0,0,0,0,0.521745061811734,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.622077260032973,3.32525365389494,2.26432103933032,0.629063767423586,2.51182167841632,0,0.212574920101683,0.123935764259002,0,0,0,0,0,0,0.0642292250964595,0,0,0.205116364240755,0.504143392443436,0.0691572524642179,0.161475645631851,0,0,0,0,0,0.381382095467167,0,0,0,0,0,0,0,0,0.0675375846183947,0,0.206686796501184,0,1.09394961803644,0,0.496211178389294,0.175871244359621,0,3.74991285114801,1.00885116665647,0.606965604236632,0.91064876540519,0,0,0,0.135939465953663,0,0,0,0.078493092850514,0,0,0.913158720509496,0,0,0.214429632529969,0,0,0.521574816907738,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205325613712494,0,0.485710993059139,0,5.96852325484105,0,0.22589216407792,0,0,0,0,0,0,0,0.196308467114945,0,0,0,0,0.0644578879735772,0,0,0,0,0,0,0,0,0,1.30905207102113,0,0,0,0,0,0,0,0,0,0,0,0.151557396436479,0,0,0.103432995861895,0.426467963801962,0.23806443146374,0.129177819672012,0.124149428591716,0,0,0.606351566874658,0,1.02669990325584,0.134704106029175,0.143444410785353,0.332660356546013,0,0,0,0,0,0.244482888365733,1.62758471326295,0,0,0 | ||
|short_description=p50@TCF4 | |short_description=p50@TCF4 | ||
}} | }} |
Latest revision as of 20:41, 19 September 2015
Short description: | p50@TCF4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_50_at_TCF4_5end |
Coexpression cluster: | NA |
Association with transcript: | -357bp_to_NM_001243234, NM_001243235_5end |
EntrezGene: | TCF4 |
HGNC: | 11634 |
UniProt: | G0LNU9P15884G0LNV0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 1.49e-12 | 8 |
neuron | 5.55e-08 | 6 |
neuroblast | 5.55e-08 | 6 |
electrically signaling cell | 5.55e-08 | 6 |
neurectodermal cell | 7.35e-08 | 59 |
Ontology term | p-value | n |
---|---|---|
pineal body | 5.41e-22 | 2 |
regional part of epithalamus | 5.41e-22 | 2 |
secretory circumventricular organ | 5.41e-22 | 2 |
circumventricular organ | 5.41e-22 | 2 |
epithalamus | 5.41e-22 | 2 |
sympathetic nervous system | 7.41e-20 | 5 |
autonomic nervous system | 7.41e-20 | 5 |
nervous system | 2.60e-12 | 89 |
gland of diencephalon | 1.73e-11 | 4 |
neuroendocrine gland | 1.73e-11 | 4 |
regional part of diencephalon | 1.73e-11 | 4 |
peripheral nervous system | 2.69e-11 | 8 |
ectoderm-derived structure | 2.82e-08 | 171 |
ectoderm | 2.82e-08 | 171 |
presumptive ectoderm | 2.82e-08 | 171 |
central nervous system | 3.42e-07 | 81 |
diencephalon | 6.20e-07 | 7 |
future diencephalon | 6.20e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
neuroendocrine tumor | 1.18e-16 | 6 |
neuroectodermal tumor | 3.21e-10 | 10 |