FFCP PHASE1:Hg19::chr12:6484687..6484698,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6337 | |EntrezGene=6337 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10599 | |HGNC=10599 | ||
|TSSclassifier=strong | |||
|UniProt=P37088 | |UniProt=P37088 | ||
|association_with_transcript=16bp_to_ENST00000228916_5end | |association_with_transcript=16bp_to_ENST00000228916_5end | ||
|cluster_id=chr12:6484687..6484698,- | |||
|coexpression_cluster_id=C3317 | |||
|description=CAGE_peak_6_at_SCNN1A_5end | |description=CAGE_peak_6_at_SCNN1A_5end | ||
|id=chr12:6484687..6484698,- | |id=chr12:6484687..6484698,- | ||
|ontology_enrichment_celltype=CL:0000066!4.06e-22!254;CL:0002076!1.83e-20!43;CL:0000223!4.62e-18!59;CL:0002368!1.37e-12!13;CL:0002202!3.47e-09!9;CL:0002632!3.47e-09!9;CL:0000082!2.04e-08!19;CL:0002322!3.30e-08!5;CL:0002251!8.40e-07!21 | |ontology_enrichment_celltype=CL:0000066!4.06e-22!254;CL:0002076!1.83e-20!43;CL:0000223!4.62e-18!59;CL:0002368!1.37e-12!13;CL:0002202!3.47e-09!9;CL:0002632!3.47e-09!9;CL:0000082!2.04e-08!19;CL:0002322!3.30e-08!5;CL:0002251!8.40e-07!21 | ||
|ontology_enrichment_celltype_v019=CL:0002322;8.05e-14;5!CL:0000082;4.55e-08;19!CL:0002076;1.85e-07;42!CL:0000123;2.52e-07;2!CL:0000242;2.52e-07;2!CL:0002202;2.67e-07;9!CL:0002632;2.67e-07;9!CL:0000039;5.36e-07;7!CL:0000586;5.36e-07;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,7.19e-15,253;CL:0002322,7.34e-14,5;CL:0002076,1.33e-10,42;CL:0000082,4.19e-08,19;CL:0000223,6.96e-08,58;CL:0002202,2.48e-07,9;CL:0002632,2.48e-07,9;CL:0000242,2.60e-07,2;CL:0000039,5.98e-07,7;CL:0000586,5.98e-07,7 | |||
|ontology_enrichment_development_v019=UBERON:0009117;3.04e-07;10!UBERON:0005564;3.04e-07;10 | |||
|ontology_enrichment_disease=DOID:305!1.08e-17!106;DOID:0050687!1.23e-11!143;DOID:299!3.93e-08!25 | |ontology_enrichment_disease=DOID:305!1.08e-17!106;DOID:0050687!1.23e-11!143;DOID:299!3.93e-08!25 | ||
|ontology_enrichment_disease_v019=DOID:0050615;6.96e-08;16!DOID:299;3.01e-07;25 | |||
|ontology_enrichment_disease_v019_2=DOID:305,3.36e-18,106;DOID:0050687,2.25e-13,143;DOID:0050615,7.09e-08,16;DOID:162,2.81e-07,235;DOID:299,3.51e-07,25;DOID:14566,5.97e-07,239 | |||
|ontology_enrichment_uberon=UBERON:0004119!7.91e-22!169;UBERON:0000925!7.91e-22!169;UBERON:0006595!7.91e-22!169;UBERON:0004921!5.35e-19!129;UBERON:0004185!5.35e-19!129;UBERON:0001007!1.62e-18!155;UBERON:0001555!1.62e-18!155;UBERON:0007026!1.62e-18!155;UBERON:0000464!6.57e-18!104;UBERON:0000466!1.38e-15!126;UBERON:0000077!2.63e-15!130;UBERON:0000065!1.12e-14!53;UBERON:0005178!1.61e-14!34;UBERON:0002224!1.61e-14!34;UBERON:0001004!3.70e-14!72;UBERON:0005153!4.72e-14!37;UBERON:0005181!6.51e-14!35;UBERON:0005177!1.22e-12!107;UBERON:0002048!2.64e-11!22;UBERON:0000117!2.64e-11!22;UBERON:0000171!2.64e-11!22;UBERON:0000170!2.64e-11!22;UBERON:0005597!2.64e-11!22;UBERON:0000118!2.64e-11!22;UBERON:0001041!4.23e-11!98;UBERON:0005911!2.15e-10!82;UBERON:0001008!5.67e-10!45;UBERON:0008947!8.59e-10!38;UBERON:0003258!8.59e-10!38;UBERON:0000072!1.17e-09!46;UBERON:0005157!2.48e-09!51;UBERON:0006554!2.71e-09!44;UBERON:0005156!1.61e-08!59;UBERON:0000990!1.61e-08!59;UBERON:0004802!2.04e-08!19;UBERON:0000115!2.04e-08!19;UBERON:0007196!2.59e-08!14;UBERON:0001558!2.59e-08!14;UBERON:0003064!1.63e-07!37;UBERON:0004807!2.41e-07!28;UBERON:0000915!2.42e-07!52;UBERON:0009569!2.72e-07!113;UBERON:0003104!3.13e-07!238;UBERON:0009142!3.13e-07!238;UBERON:0000063!3.44e-07!97;UBERON:0003133!4.33e-07!48;UBERON:0002553!8.37e-07!70 | |||
|ontology_enrichment_uberon_v019=UBERON:0005178;1.65e-09;34!UBERON:0002224;1.65e-09;34!UBERON:0002048;1.30e-08;22!UBERON:0000117;1.30e-08;22!UBERON:0000171;1.30e-08;22!UBERON:0000170;1.30e-08;22!UBERON:0005181;1.69e-08;35!UBERON:0004802;4.55e-08;19!UBERON:0000115;4.55e-08;19!UBERON:0004807;8.82e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005178,1.02e-10,34;UBERON:0002224,1.02e-10,34;UBERON:0005181,2.52e-10,35;UBERON:0004921,1.64e-09,118;UBERON:0002048,1.24e-08,22;UBERON:0000117,1.24e-08,22;UBERON:0000171,1.24e-08,22;UBERON:0000170,1.24e-08,22;UBERON:0005597,1.24e-08,22;UBERON:0000118,1.24e-08,22;UBERON:0005177,1.52e-08,101;UBERON:0004802,4.19e-08,19;UBERON:0000115,4.19e-08,19;UBERON:0001007,4.44e-08,145;UBERON:0001555,4.44e-08,145;UBERON:0007026,4.44e-08,145;UBERON:0005153,4.60e-08,37;UBERON:0008947,8.04e-08,38;UBERON:0003258,8.04e-08,38;UBERON:0000072,7.04e-07,47 | |||
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| ||
|short_description=p6@SCNN1A | |short_description=p6@SCNN1A | ||
}} | }} |
Latest revision as of 20:52, 19 September 2015
Short description: | p6@SCNN1A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_SCNN1A_5end |
Coexpression cluster: | C3317_smallcell_lung_merkel_small_kidney_bronchioalveolar_Renal |
Association with transcript: | 16bp_to_ENST00000228916_5end |
EntrezGene: | SCNN1A |
HGNC: | 10599 |
UniProt: | P37088 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 7.19e-15 | 253 |
embryonic stem cell | 7.34e-14 | 5 |
endo-epithelial cell | 1.33e-10 | 42 |
epithelial cell of lung | 4.19e-08 | 19 |
endodermal cell | 6.96e-08 | 58 |
epithelial cell of tracheobronchial tree | 2.48e-07 | 9 |
epithelial cell of lower respiratory tract | 2.48e-07 | 9 |
Merkel cell | 2.60e-07 | 2 |
germ line cell | 5.98e-07 | 7 |
germ cell | 5.98e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
thoracic cavity element | 1.02e-10 | 34 |
thoracic cavity | 1.02e-10 | 34 |
thoracic segment organ | 2.52e-10 | 35 |
subdivision of digestive tract | 1.64e-09 | 118 |
lung | 1.24e-08 | 22 |
respiratory tube | 1.24e-08 | 22 |
respiration organ | 1.24e-08 | 22 |
pair of lungs | 1.24e-08 | 22 |
lung primordium | 1.24e-08 | 22 |
lung bud | 1.24e-08 | 22 |
trunk region element | 1.52e-08 | 101 |
respiratory tract epithelium | 4.19e-08 | 19 |
lung epithelium | 4.19e-08 | 19 |
digestive system | 4.44e-08 | 145 |
digestive tract | 4.44e-08 | 145 |
primitive gut | 4.44e-08 | 145 |
epithelial bud | 4.60e-08 | 37 |
respiratory primordium | 8.04e-08 | 38 |
endoderm of foregut | 8.04e-08 | 38 |
segment of respiratory tract | 7.04e-07 | 47 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 3.36e-18 | 106 |
cell type cancer | 2.25e-13 | 143 |
respiratory system cancer | 7.09e-08 | 16 |
cancer | 2.81e-07 | 235 |
adenocarcinoma | 3.51e-07 | 25 |
disease of cellular proliferation | 5.97e-07 | 239 |