FFCP PHASE1:Hg19::chr22:32149927..32150081,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr22:32149927..32150081,+
|short_description=p1@DEPDC5
|description=CAGE_peak_1_at_DEPDC5_5end
|association_with_transcript=0bp_to_ENST00000266091,ENST00000382...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=9681 | |EntrezGene=9681 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18423 | |HGNC=18423 | ||
|TSSclassifier=strong | |||
|UniProt=C9JIN9,O75140,C9JGS4,F8WAX3,B4DH93,F5GYZ8,B9EGN9 | |UniProt=C9JIN9,O75140,C9JGS4,F8WAX3,B4DH93,F5GYZ8,B9EGN9 | ||
|association_with_transcript=0bp_to_ENST00000266091,ENST00000382105,ENST00000382109,ENST00000400242,ENST00000400246,ENST00000400249,ENST00000437411,ENST00000456178,ENST00000469969,ENST00000535622,ENST00000536766,NM_001007188,NM_001242896,NM_001242897,NM_014662,uc003alr.1,uc003als.2,uc011als.1,uc011alt.1,uc011alu.1,uc011alv.1_5end | |||
|cluster_id=chr22:32149927..32150081,+ | |||
|description=CAGE_peak_1_at_DEPDC5_5end | |||
|id=chr22:32149927..32150081,+ | |||
|ontology_enrichment_celltype=CL:0000037!5.97e-25!172;CL:0000566!5.97e-25!172;CL:0002032!2.53e-23!165;CL:0000837!2.53e-23!165;CL:0000988!8.26e-23!182;CL:0000738!2.61e-20!140;CL:0000542!8.90e-18!53;CL:0000051!8.90e-18!53;CL:0000838!2.70e-17!52;CL:0002031!3.61e-16!124;CL:0002087!2.33e-15!119;CL:0000945!1.96e-09!24;CL:0000826!1.96e-09!24;CL:0000763!1.78e-08!112;CL:0000049!1.78e-08!112;CL:0000084!5.91e-08!25;CL:0000827!5.91e-08!25;CL:0000791!6.56e-08!18;CL:0000789!6.56e-08!18;CL:0002420!6.56e-08!18;CL:0002419!6.56e-08!18;CL:0000790!6.56e-08!18 | |||
|ontology_enrichment_celltype_v019=CL:0000542;9.08e-11;53!CL:0000945;2.39e-09;24!CL:0000084;6.61e-08;25!CL:0000791;1.03e-07;18!CL:0000789;1.03e-07;18!CL:0002419;1.03e-07;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,8.03e-26,168;CL:0002032,3.52e-24,161;CL:0000837,3.52e-24,161;CL:0000988,1.02e-23,177;CL:0000738,3.41e-21,136;CL:0000542,8.88e-18,53;CL:0000051,8.88e-18,53;CL:0000838,2.69e-17,52;CL:0002031,5.54e-17,120;CL:0002087,3.62e-16,115;CL:0000945,1.95e-09,24;CL:0000826,1.95e-09,24;CL:0000763,5.41e-09,108;CL:0000049,5.41e-09,108;CL:0000084,5.91e-08,25;CL:0000827,5.91e-08,25;CL:0000791,6.56e-08,18;CL:0000789,6.56e-08,18;CL:0002420,6.56e-08,18;CL:0002419,6.56e-08,18;CL:0000790,6.56e-08,18 | |||
|ontology_enrichment_development_v019=CL:0000051;9.08e-11;53!CL:0000790;1.03e-07;18 | |||
|ontology_enrichment_disease=DOID:2531!3.80e-07!51;DOID:0060083!3.80e-07!51 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:2531,3.80e-07,51;DOID:0060083,3.80e-07,51 | |||
|ontology_enrichment_uberon=UBERON:0007023!1.40e-18!115;UBERON:0001049!1.77e-12!57;UBERON:0005068!1.77e-12!57;UBERON:0006241!1.77e-12!57;UBERON:0007135!1.77e-12!57;UBERON:0001017!1.87e-11!82;UBERON:0005743!2.17e-11!86;UBERON:0002780!3.39e-11!41;UBERON:0001890!3.39e-11!41;UBERON:0006240!3.39e-11!41;UBERON:0003080!7.09e-11!42;UBERON:0000073!2.21e-10!94;UBERON:0001016!2.21e-10!94;UBERON:0000955!3.94e-10!69;UBERON:0006238!3.94e-10!69;UBERON:0002616!6.15e-10!59;UBERON:0001893!1.39e-09!34;UBERON:0001869!2.58e-09!32;UBERON:0002791!4.17e-09!33;UBERON:0002619!6.51e-09!22;UBERON:0002020!1.50e-08!34;UBERON:0003528!1.50e-08!34;UBERON:0001950!1.63e-08!20;UBERON:0000956!5.11e-08!25;UBERON:0000203!5.11e-08!25;UBERON:0003075!5.65e-07!86;UBERON:0007284!5.65e-07!86;UBERON:0003056!8.52e-07!61;UBERON:0002346!9.87e-07!90 | |||
|ontology_enrichment_uberon_v019=UBERON:0002619;8.52e-09;22!UBERON:0002780;1.21e-08;41!UBERON:0001890;1.21e-08;41!UBERON:0001893;1.77e-08;34!UBERON:0001950;1.94e-08;20!UBERON:0001869;2.08e-08;32!UBERON:0000073;3.90e-08;53!UBERON:0002616;3.90e-08;53!UBERON:0000956;6.04e-08;25!UBERON:0000203;6.04e-08;25!UBERON:0002791;7.87e-08;32!UBERON:0003528;1.58e-07;34!UBERON:0002020;1.58e-07;34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,3.50e-18,114;UBERON:0001049,9.26e-13,56;UBERON:0005068,9.26e-13,56;UBERON:0006241,9.26e-13,56;UBERON:0007135,9.26e-13,56;UBERON:0000073,1.50e-12,53;UBERON:0002616,1.50e-12,53;UBERON:0001017,1.21e-11,81;UBERON:0002780,3.39e-11,41;UBERON:0001890,3.39e-11,41;UBERON:0003080,3.39e-11,41;UBERON:0006240,3.39e-11,41;UBERON:0001016,1.42e-10,89;UBERON:0000955,2.51e-10,68;UBERON:0006238,2.51e-10,68;UBERON:0001893,1.39e-09,34;UBERON:0001869,2.58e-09,32;UBERON:0002619,6.51e-09,22;UBERON:0002791,1.01e-08,32;UBERON:0003528,1.49e-08,34;UBERON:0002020,1.49e-08,34;UBERON:0001950,1.63e-08,20;UBERON:0000956,5.11e-08,25;UBERON:0000203,5.11e-08,25 | |||
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| ||
|short_description=p1@DEPDC5 | |||
}} | }} |
Latest revision as of 21:15, 19 September 2015
Short description: | p1@DEPDC5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_DEPDC5_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000266091, ENST00000382105, ENST00000382109, ENST00000400242, ENST00000400246, ENST00000400249, ENST00000437411, ENST00000456178, ENST00000469969, ENST00000535622, ENST00000536766, NM_001007188, NM_001242896, NM_001242897, NM_014662, uc003alr.1, uc003als.2, uc011als.1, uc011alt.1, uc011alu.1, uc011alv.1_5end |
EntrezGene: | DEPDC5 |
HGNC: | 18423 |
UniProt: | C9JIN9O75140C9JGS4F8WAX3B4DH93F5GYZ8B9EGN9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 8.03e-26 | 168 |
hematopoietic oligopotent progenitor cell | 3.52e-24 | 161 |
hematopoietic multipotent progenitor cell | 3.52e-24 | 161 |
hematopoietic cell | 1.02e-23 | 177 |
leukocyte | 3.41e-21 | 136 |
lymphocyte | 8.88e-18 | 53 |
common lymphoid progenitor | 8.88e-18 | 53 |
lymphoid lineage restricted progenitor cell | 2.69e-17 | 52 |
hematopoietic lineage restricted progenitor cell | 5.54e-17 | 120 |
nongranular leukocyte | 3.62e-16 | 115 |
lymphocyte of B lineage | 1.95e-09 | 24 |
pro-B cell | 1.95e-09 | 24 |
myeloid cell | 5.41e-09 | 108 |
common myeloid progenitor | 5.41e-09 | 108 |
T cell | 5.91e-08 | 25 |
pro-T cell | 5.91e-08 | 25 |
mature alpha-beta T cell | 6.56e-08 | 18 |
alpha-beta T cell | 6.56e-08 | 18 |
immature T cell | 6.56e-08 | 18 |
mature T cell | 6.56e-08 | 18 |
immature alpha-beta T cell | 6.56e-08 | 18 |
Ontology term | p-value | n |
---|---|---|
adult organism | 3.50e-18 | 114 |
neural tube | 9.26e-13 | 56 |
neural rod | 9.26e-13 | 56 |
future spinal cord | 9.26e-13 | 56 |
neural keel | 9.26e-13 | 56 |
regional part of nervous system | 1.50e-12 | 53 |
regional part of brain | 1.50e-12 | 53 |
central nervous system | 1.21e-11 | 81 |
regional part of forebrain | 3.39e-11 | 41 |
forebrain | 3.39e-11 | 41 |
anterior neural tube | 3.39e-11 | 41 |
future forebrain | 3.39e-11 | 41 |
nervous system | 1.42e-10 | 89 |
brain | 2.51e-10 | 68 |
future brain | 2.51e-10 | 68 |
telencephalon | 1.39e-09 | 34 |
cerebral hemisphere | 2.58e-09 | 32 |
regional part of cerebral cortex | 6.51e-09 | 22 |
regional part of telencephalon | 1.01e-08 | 32 |
brain grey matter | 1.49e-08 | 34 |
gray matter | 1.49e-08 | 34 |
neocortex | 1.63e-08 | 20 |
cerebral cortex | 5.11e-08 | 25 |
pallium | 5.11e-08 | 25 |
Ontology term | p-value | n |
---|---|---|
hematologic cancer | 3.80e-07 | 51 |
immune system cancer | 3.80e-07 | 51 |