FFCP PHASE1:Hg19::chr12:6554134..6554145,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=939 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11922 | |||
|TSSclassifier=strong | |||
|UniProt=P26842 | |||
|association_with_transcript=83bp_to_NM_001242,uc001qod.2_5end | |||
|cluster_id=chr12:6554134..6554145,+ | |||
|coexpression_cluster_id=C2232 | |||
|description=CAGE_peak_3_at_CD27_5end | |||
|id=chr12:6554134..6554145,+ | |||
|ontology_enrichment_celltype=CL:0000542!2.34e-47!53;CL:0000051!2.34e-47!53;CL:0000838!4.42e-46!52;CL:0002087!3.85e-29!119;CL:0000945!1.75e-25!24;CL:0000826!1.75e-25!24;CL:0000791!5.42e-25!18;CL:0000789!5.42e-25!18;CL:0002420!5.42e-25!18;CL:0002419!5.42e-25!18;CL:0000790!5.42e-25!18;CL:0002031!2.34e-23!124;CL:0000738!3.68e-23!140;CL:0000084!3.06e-18!25;CL:0000827!3.06e-18!25;CL:0000236!1.29e-17!14;CL:0000625!1.63e-17!11;CL:0000037!9.26e-16!172;CL:0000566!9.26e-16!172;CL:0002032!1.67e-14!165;CL:0000837!1.67e-14!165;CL:0000988!5.07e-14!182;CL:0000624!6.54e-11!6 | |||
|ontology_enrichment_celltype_v019=CL:0000791;3.04e-39;18!CL:0000789;3.04e-39;18!CL:0002419;3.04e-39;18!CL:0000542;2.26e-27;53!CL:0000625;5.68e-27;11!CL:0000084;6.22e-27;25!CL:0000945;5.04e-21;24!CL:0000236;1.25e-17;13!CL:0000624;1.86e-16;6!CL:0000898;1.10e-09;3!CL:0000226;4.35e-08;3!CL:0000842;4.35e-08;3!CL:0002087;3.94e-07;104!CL:0000815;5.02e-07;2!CL:0000792;5.02e-07;2!CL:0002677;5.02e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,1.55e-48,53;CL:0000051,1.55e-48,53;CL:0000838,1.06e-46,52;CL:0000791,4.48e-39,18;CL:0000789,4.48e-39,18;CL:0002420,4.48e-39,18;CL:0002419,4.48e-39,18;CL:0000790,4.48e-39,18;CL:0000625,7.19e-27,11;CL:0000084,8.16e-27,25;CL:0000827,8.16e-27,25;CL:0002087,2.18e-22,115;CL:0000945,4.57e-21,24;CL:0000826,4.57e-21,24;CL:0000236,6.67e-20,14;CL:0000738,2.04e-17,136;CL:0000624,2.22e-16,6;CL:0002031,5.47e-16,120;CL:0000037,2.74e-12,168;CL:0000988,3.40e-11,177;CL:0002032,1.48e-10,161;CL:0000837,1.48e-10,161;CL:0000898,1.07e-09,3;CL:0000226,3.25e-08,3;CL:0000842,3.25e-08,3;CL:0000815,5.03e-07,2;CL:0000792,5.03e-07,2;CL:0002677,5.03e-07,2 | |||
|ontology_enrichment_development_v019=CL:0000790;3.04e-39;18!CL:0000051;2.26e-27;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!2.01e-13!15;UBERON:0000179!2.01e-13!15;UBERON:0000463!2.01e-13!15;UBERON:0007023!7.17e-11!115;UBERON:0004177!1.96e-08!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;9.20e-18;15!UBERON:0000179;9.20e-18;15!UBERON:0000463;9.20e-18;15!UBERON:0002390;2.62e-14;32!UBERON:0004177;3.30e-12;5!UBERON:0005057;3.30e-12;5!UBERON:0002193;2.64e-10;42!UBERON:0002106;4.52e-08;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,7.58e-18,15;UBERON:0000179,7.58e-18,15;UBERON:0000463,7.58e-18,15;UBERON:0004177,1.03e-12,7;UBERON:0005057,1.03e-12,7;UBERON:0002106,4.09e-08,3;UBERON:0004854,4.09e-08,3;UBERON:0009034,4.09e-08,3;UBERON:0002095,4.09e-08,3;UBERON:0004782,4.09e-08,3;UBERON:0003281,4.09e-08,3;UBERON:0009664,4.09e-08,3;UBERON:0002296,4.09e-08,3;UBERON:0005602,4.09e-08,3;UBERON:0001179,4.09e-08,3;UBERON:0006293,4.09e-08,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.916960868975415,0.492603536699674,0.393553906568396,0,0,0,0,0,0,4.7254992353984,8.10364625178303,0,1.10799081706375,0.401088894940283,0.217010870715852,0.895661896959697,0.971680998056939,0.515151135268373,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272906150057846,0,0,0.320929027076094,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0.19891667719909,0,3.51992488922645,1.63841583378639,1.77901850772711,3.41384178053206,2.80277190925209,1.72425731986345,3.96626923670917,4.77026877267682,0.569212969109448,2.34894875748376,0.764546456250458,0,0,0,3.540775862049,2.35806457649499,4.11202997999018,17.3873955206305,9.45174573237412,10.4158517261641,15.5861382726329,8.13296335261767,12.0788422064683,11.7412964129319,11.1029584143656,7.68547918354051,7.80356085359269,8.05745732558013,6.07970039128866,13.6207450295475,11.7146384898028,11.7717964359474,8.36284190439814,3.73920830901968,10.7301738208538,11.6833331464094,7.08455137654608,6.37130828648194,10.4173352617027,3.8018081777935,7.98048131112196,4.60751800155906,3.74792179657038,4.97232229292435,1.64225599384209,2.01606743224732,1.06976078313403,3.04131248153878,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0.348259474598534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.148631162288728,0,0,0,0,0,0,0,0,0,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.77327684181734,0.215627574859517,0.77005821767849,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.72182447021197,1.94142780736755,2.77491650288955,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.53723804616085,2.29391162142713,2.27858874869665,1.66762242820452,2.87953591160336,2.59389324477087,0.540031437238115,2.37937552888281,0,0,0,1.30062222588003,0,0.0711418433484141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.97311047956066,0,0,0.615424027305347,0,0,0,0,0.0986434056369336,2.3948309234694,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.384751292518985,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.98578579323551,2.38835424159016,1.22206028986725,0,0,0,0,0,0,5.65609846568565,0,0,0,1.20990716048664,0.30607276163049,0.126373159256976,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0.484945082442097,0,0,0,0,0,0,0,0.426905989478705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.429765441419957,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157611414598396,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0,0,0,0,0.106787412567695,0.157204305099666,0.414239055347196,4.46549419630756,32.4083076312629,7.06397070609196,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0,0,1.09651553371436,0,0,0,0,0,0,0,0.0887023701626388,4.72459348978695,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0.430227358820278,0,0,0.423387050190929,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.463044948647668,0,0,0,0,0,0,0.4226557275834,0,5.45106724283151,1.80482086326016,1.49911733887393,0,0,0,0,0.458729283404541,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0.852935927603924,0.23806443146374,2.45437857376823,1.80016671457988,0,0.12729431655633,0.202117188958219,0,0,5.9269806652837,0.430333232356058,0,0,0,0,0,0,0.244482888365733,0,0,7.24585656927694,8.65534929218729 | |||
|short_description=p3@CD27 | |||
}} |
Latest revision as of 22:10, 19 September 2015
Short description: | p3@CD27 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_CD27_5end |
Coexpression cluster: | C2232_lymphangiectasia_CD4_diffuse_Burkitt_lymphoma_plasma_tonsil |
Association with transcript: | 83bp_to_NM_001242, uc001qod.2_5end |
EntrezGene: | CD27 |
HGNC: | 11922 |
UniProt: | P26842 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 1.55e-48 | 53 |
common lymphoid progenitor | 1.55e-48 | 53 |
lymphoid lineage restricted progenitor cell | 1.06e-46 | 52 |
mature alpha-beta T cell | 4.48e-39 | 18 |
alpha-beta T cell | 4.48e-39 | 18 |
immature T cell | 4.48e-39 | 18 |
mature T cell | 4.48e-39 | 18 |
immature alpha-beta T cell | 4.48e-39 | 18 |
CD8-positive, alpha-beta T cell | 7.19e-27 | 11 |
T cell | 8.16e-27 | 25 |
pro-T cell | 8.16e-27 | 25 |
nongranular leukocyte | 2.18e-22 | 115 |
lymphocyte of B lineage | 4.57e-21 | 24 |
pro-B cell | 4.57e-21 | 24 |
B cell | 6.67e-20 | 14 |
leukocyte | 2.04e-17 | 136 |
CD4-positive, alpha-beta T cell | 2.22e-16 | 6 |
hematopoietic lineage restricted progenitor cell | 5.47e-16 | 120 |
hematopoietic stem cell | 2.74e-12 | 168 |
hematopoietic cell | 3.40e-11 | 177 |
hematopoietic oligopotent progenitor cell | 1.48e-10 | 161 |
hematopoietic multipotent progenitor cell | 1.48e-10 | 161 |
naive T cell | 1.07e-09 | 3 |
single nucleate cell | 3.25e-08 | 3 |
mononuclear cell | 3.25e-08 | 3 |
regulatory T cell | 5.03e-07 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 5.03e-07 | 2 |
naive regulatory T cell | 5.03e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
blood | 7.58e-18 | 15 |
haemolymphatic fluid | 7.58e-18 | 15 |
organism substance | 7.58e-18 | 15 |
hemopoietic organ | 1.03e-12 | 7 |
immune organ | 1.03e-12 | 7 |
spleen | 4.09e-08 | 3 |
gastrointestinal system mesentery | 4.09e-08 | 3 |
stomach region | 4.09e-08 | 3 |
mesentery | 4.09e-08 | 3 |
gastrointestinal system serosa | 4.09e-08 | 3 |
mesentery of stomach | 4.09e-08 | 3 |
gut mesentery | 4.09e-08 | 3 |
dorsal mesentery | 4.09e-08 | 3 |
dorsal mesogastrium | 4.09e-08 | 3 |
peritoneal cavity | 4.09e-08 | 3 |
spleen primordium | 4.09e-08 | 3 |