FFCP PHASE1:Hg19::chr3:9834088..9834176,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10474 | |EntrezGene=10474 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19422 | |HGNC=19422 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000492635_5end | |association_with_transcript=0bp_to_ENST00000492635_5end | ||
|cluster_id=chr3:9834088..9834176,- | |||
|coexpression_cluster_id=C385 | |coexpression_cluster_id=C385 | ||
|description=CAGE_peak_1_at_TADA3_5end | |description=CAGE_peak_1_at_TADA3_5end | ||
|id=chr3:9834088..9834176,- | |id=chr3:9834088..9834176,- | ||
|ontology_enrichment_celltype=CL:0000359;8.64e-11;32!CL:0000192;5.02e-10;43!CL:0000187;1.80e-07;55 | |ontology_enrichment_celltype=CL:0000055!5.68e-19!180;CL:0002371!3.46e-17!591;CL:0000183!7.55e-16!59;CL:0000144!8.79e-14!625;CL:0000192!8.80e-14!42;CL:0000514!8.80e-14!42;CL:0000187!1.99e-13!54;CL:0000680!2.36e-13!57;CL:0000056!2.36e-13!57;CL:0000355!2.36e-13!57;CL:0000393!8.66e-12!60;CL:0000211!8.66e-12!60;CL:0000359!1.50e-11!32;CL:0000220!7.25e-11!246;CL:0000222!2.07e-10!119;CL:0002321!2.52e-10!248;CL:0000548!5.22e-10!679;CL:0000004!5.22e-10!679;CL:0000255!5.22e-10!679;CL:0000003!2.82e-09!722;CL:0000012!3.21e-09!682 | ||
| | |ontology_enrichment_celltype_v019=CL:0000359;8.64e-11;32!CL:0000192;5.02e-10;43!CL:0000187;1.80e-07;55 | ||
|ontology_enrichment_celltype_v019_2=CL:0000192,1.40e-13,43;CL:0000514,1.40e-13,43;CL:0000187,2.76e-13,55;CL:0000680,3.20e-13,58;CL:0000056,3.20e-13,58;CL:0000355,3.20e-13,58;CL:0000393,1.10e-11,61;CL:0000211,1.10e-11,61;CL:0000359,1.50e-11,32;CL:0000222,1.40e-10,121;CL:0002321,1.66e-10,250;CL:0000723,6.28e-07,433;CL:0000048,7.55e-07,427 | |||
|ontology_enrichment_development_v019=CL:0000514;5.02e-10;43!CL:0000355;2.04e-07;58 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_uberon= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000486!2.70e-15!82;UBERON:0005256!5.54e-14!143;UBERON:0004290!9.71e-14!70;UBERON:0000914!1.49e-13!83;UBERON:0002329!1.49e-13!83;UBERON:0003077!1.49e-13!83;UBERON:0003059!1.49e-13!83;UBERON:0007282!1.49e-13!83;UBERON:0009618!1.49e-13!83;UBERON:0007285!1.49e-13!83;UBERON:0001134!3.05e-12!61;UBERON:0002036!3.05e-12!61;UBERON:0003082!3.05e-12!61;UBERON:0002385!1.18e-11!63;UBERON:0001015!1.18e-11!63;UBERON:0000383!1.18e-11!63;UBERON:0002100!2.76e-10!216;UBERON:0001637!3.06e-09!42;UBERON:0003509!3.06e-09!42;UBERON:0004572!3.06e-09!42;UBERON:0004872!1.31e-07!84;UBERON:0003914!1.48e-07!118;UBERON:0001009!1.85e-07!113;UBERON:0004573!1.87e-07!33;UBERON:0004571!1.87e-07!33;UBERON:0004535!2.52e-07!110;UBERON:0000490!7.15e-07!138 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007503,7.84e-16,78;UBERON:0000486,3.37e-15,83;UBERON:0002329,1.23e-13,71;UBERON:0003059,1.23e-13,71;UBERON:0007282,1.23e-13,71;UBERON:0004290,1.23e-13,71;UBERON:0009618,1.23e-13,71;UBERON:0007524,1.70e-13,73;UBERON:0003077,3.60e-13,72;UBERON:0007285,3.60e-13,72;UBERON:0005256,1.83e-12,122;UBERON:0001134,3.90e-12,62;UBERON:0002036,3.90e-12,62;UBERON:0003082,3.90e-12,62;UBERON:0002385,1.47e-11,64;UBERON:0001015,1.47e-11,64;UBERON:0000383,1.47e-11,64;UBERON:0003104,2.74e-11,160;UBERON:0009142,2.74e-11,160;UBERON:0002100,3.17e-10,199;UBERON:0001637,3.06e-09,42;UBERON:0003509,3.06e-09,42;UBERON:0004572,3.06e-09,42;UBERON:0000926,1.25e-08,315;UBERON:0004120,1.25e-08,315;UBERON:0006603,1.25e-08,315;UBERON:0000490,4.48e-08,148;UBERON:0004872,1.36e-07,83;UBERON:0003914,1.43e-07,117;UBERON:0004573,1.87e-07,33;UBERON:0004571,1.87e-07,33;UBERON:0001009,1.96e-07,112;UBERON:0004535,2.66e-07,109 | |||
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| ||
|short_description=p1@TADA3 | |short_description=p1@TADA3 | ||
}} | }} |
Latest revision as of 22:14, 19 September 2015
Short description: | p1@TADA3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TADA3_5end |
Coexpression cluster: | C385_Mesenchymal_Alveolar_Osteoblast_Smooth_Renal_Placental_Fibroblast |
Association with transcript: | 0bp_to_ENST00000492635_5end |
EntrezGene: | TADA3 |
HGNC: | 19422 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell | 1.40e-13 | 43 |
smooth muscle myoblast | 1.40e-13 | 43 |
muscle cell | 2.76e-13 | 55 |
muscle precursor cell | 3.20e-13 | 58 |
myoblast | 3.20e-13 | 58 |
multi-potent skeletal muscle stem cell | 3.20e-13 | 58 |
electrically responsive cell | 1.10e-11 | 61 |
electrically active cell | 1.10e-11 | 61 |
vascular associated smooth muscle cell | 1.50e-11 | 32 |
mesodermal cell | 1.40e-10 | 121 |
embryonic cell | 1.66e-10 | 250 |
somatic stem cell | 6.28e-07 | 433 |
multi fate stem cell | 7.55e-07 | 427 |
Ontology term | p-value | n |
---|---|---|
epithelial vesicle | 7.84e-16 | 78 |
multilaminar epithelium | 3.37e-15 | 83 |
somite | 1.23e-13 | 71 |
presomitic mesoderm | 1.23e-13 | 71 |
presumptive segmental plate | 1.23e-13 | 71 |
dermomyotome | 1.23e-13 | 71 |
trunk paraxial mesoderm | 1.23e-13 | 71 |
dense mesenchyme tissue | 1.70e-13 | 73 |
paraxial mesoderm | 3.60e-13 | 72 |
presumptive paraxial mesoderm | 3.60e-13 | 72 |
trunk mesenchyme | 1.83e-12 | 122 |
skeletal muscle tissue | 3.90e-12 | 62 |
striated muscle tissue | 3.90e-12 | 62 |
myotome | 3.90e-12 | 62 |
muscle tissue | 1.47e-11 | 64 |
musculature | 1.47e-11 | 64 |
musculature of body | 1.47e-11 | 64 |
mesenchyme | 2.74e-11 | 160 |
entire embryonic mesenchyme | 2.74e-11 | 160 |
trunk | 3.17e-10 | 199 |
artery | 3.06e-09 | 42 |
arterial blood vessel | 3.06e-09 | 42 |
arterial system | 3.06e-09 | 42 |
mesoderm | 1.25e-08 | 315 |
mesoderm-derived structure | 1.25e-08 | 315 |
presumptive mesoderm | 1.25e-08 | 315 |
unilaminar epithelium | 4.48e-08 | 148 |
splanchnic layer of lateral plate mesoderm | 1.36e-07 | 83 |
epithelial tube | 1.43e-07 | 117 |
systemic artery | 1.87e-07 | 33 |
systemic arterial system | 1.87e-07 | 33 |
circulatory system | 1.96e-07 | 112 |
cardiovascular system | 2.66e-07 | 109 |