FFCP PHASE1:Hg19::chr17:37824259..37824278,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5409 | |EntrezGene=5409 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9160 | |HGNC=9160 | ||
|TSSclassifier=strong | |||
|UniProt=A8MT87 | |UniProt=A8MT87 | ||
|association_with_transcript=25bp_to_ENST00000394246_5end | |association_with_transcript=25bp_to_ENST00000394246_5end | ||
|cluster_id=chr17:37824259..37824278,+ | |||
|coexpression_cluster_id=C360 | |||
|description=CAGE_peak_1_at_PNMT_5end | |description=CAGE_peak_1_at_PNMT_5end | ||
|id=chr17:37824259..37824278,+ | |id=chr17:37824259..37824278,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000349;6.78e-27;19!CL:0002577;1.79e-17;3!CL:0002536;4.38e-12;2!CL:0002575;1.38e-11;2!CL:0002541;2.87e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,5.69e-27,19;CL:0002577,1.79e-17,3;CL:0002536,4.39e-12,2;CL:0002575,1.67e-11,2;CL:0002541,2.87e-08,3 | |||
|ontology_enrichment_development_v019=UBERON:0005754;9.66e-07;1 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!7.76e-29!115;UBERON:0001049!4.76e-21!57;UBERON:0005068!4.76e-21!57;UBERON:0006241!4.76e-21!57;UBERON:0007135!4.76e-21!57;UBERON:0001017!1.61e-20!82;UBERON:0002616!5.25e-20!59;UBERON:0005743!5.78e-20!86;UBERON:0000073!5.71e-18!94;UBERON:0001016!5.71e-18!94;UBERON:0000955!1.23e-17!69;UBERON:0006238!1.23e-17!69;UBERON:0002780!2.00e-17!41;UBERON:0001890!2.00e-17!41;UBERON:0006240!2.00e-17!41;UBERON:0003080!8.06e-17!42;UBERON:0003075!1.17e-16!86;UBERON:0007284!1.17e-16!86;UBERON:0002346!2.28e-16!90;UBERON:0002020!1.54e-15!34;UBERON:0003528!1.54e-15!34;UBERON:0001893!5.13e-15!34;UBERON:0001869!5.19e-15!32;UBERON:0002791!3.53e-14!33;UBERON:0005631!8.65e-13!14;UBERON:0000158!8.65e-13!14;UBERON:0003056!1.16e-12!61;UBERON:0000924!1.19e-12!173;UBERON:0006601!1.19e-12!173;UBERON:0004121!1.20e-12!169;UBERON:0002619!1.84e-11!22;UBERON:0000153!2.16e-11!129;UBERON:0007811!2.16e-11!129;UBERON:0001950!3.80e-11!20;UBERON:0000033!1.42e-10!123;UBERON:0000956!1.25e-09!25;UBERON:0000203!1.25e-09!25;UBERON:0003124!1.41e-08!7;UBERON:0002420!5.44e-08!9;UBERON:0007245!5.44e-08!9;UBERON:0010009!5.44e-08!9;UBERON:0010011!5.44e-08!9;UBERON:0000454!5.44e-08!9;UBERON:0001871!5.76e-08!7;UBERON:0002308!6.19e-08!9;UBERON:0000125!6.19e-08!9;UBERON:0000478!1.63e-07!24;UBERON:0001987!3.21e-07!4;UBERON:0004340!3.21e-07!4 | |ontology_enrichment_uberon=UBERON:0007023!7.76e-29!115;UBERON:0001049!4.76e-21!57;UBERON:0005068!4.76e-21!57;UBERON:0006241!4.76e-21!57;UBERON:0007135!4.76e-21!57;UBERON:0001017!1.61e-20!82;UBERON:0002616!5.25e-20!59;UBERON:0005743!5.78e-20!86;UBERON:0000073!5.71e-18!94;UBERON:0001016!5.71e-18!94;UBERON:0000955!1.23e-17!69;UBERON:0006238!1.23e-17!69;UBERON:0002780!2.00e-17!41;UBERON:0001890!2.00e-17!41;UBERON:0006240!2.00e-17!41;UBERON:0003080!8.06e-17!42;UBERON:0003075!1.17e-16!86;UBERON:0007284!1.17e-16!86;UBERON:0002346!2.28e-16!90;UBERON:0002020!1.54e-15!34;UBERON:0003528!1.54e-15!34;UBERON:0001893!5.13e-15!34;UBERON:0001869!5.19e-15!32;UBERON:0002791!3.53e-14!33;UBERON:0005631!8.65e-13!14;UBERON:0000158!8.65e-13!14;UBERON:0003056!1.16e-12!61;UBERON:0000924!1.19e-12!173;UBERON:0006601!1.19e-12!173;UBERON:0004121!1.20e-12!169;UBERON:0002619!1.84e-11!22;UBERON:0000153!2.16e-11!129;UBERON:0007811!2.16e-11!129;UBERON:0001950!3.80e-11!20;UBERON:0000033!1.42e-10!123;UBERON:0000956!1.25e-09!25;UBERON:0000203!1.25e-09!25;UBERON:0003124!1.41e-08!7;UBERON:0002420!5.44e-08!9;UBERON:0007245!5.44e-08!9;UBERON:0010009!5.44e-08!9;UBERON:0010011!5.44e-08!9;UBERON:0000454!5.44e-08!9;UBERON:0001871!5.76e-08!7;UBERON:0002308!6.19e-08!9;UBERON:0000125!6.19e-08!9;UBERON:0000478!1.63e-07!24;UBERON:0001987!3.21e-07!4;UBERON:0004340!3.21e-07!4 | ||
|ontology_enrichment_uberon_v019=UBERON:0000478;6.84e-21;24!UBERON:0005631;6.89e-19;10!UBERON:0000158;6.89e-19;10!UBERON:0001987;3.15e-13;4!UBERON:0000305;2.01e-12;7!UBERON:0000125;2.86e-09;9!UBERON:0002308;2.86e-09;9!UBERON:0003124;2.87e-08;3!UBERON:0000920;2.87e-08;3!UBERON:0006947;3.42e-08;3!UBERON:0004054;3.42e-08;3!UBERON:0005383;6.21e-08;3!UBERON:0005382;6.21e-08;3!UBERON:0009663;3.68e-07;7!UBERON:0001894;6.12e-07;7!UBERON:0001000;8.66e-07;1!UBERON:0005352;8.66e-07;1!UBERON:0000998;9.66e-07;1!UBERON:0006868;9.66e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,4.10e-30,14;UBERON:0000158,4.10e-30,14;UBERON:0000478,5.97e-21,24;UBERON:0003124,1.03e-19,7;UBERON:0001987,3.15e-13,4;UBERON:0004340,3.15e-13,4;UBERON:0000305,1.66e-12,7;UBERON:0004871,5.93e-11,8;UBERON:0000125,3.42e-09,9;UBERON:0002308,3.42e-09,9;UBERON:0000920,2.87e-08,3;UBERON:0006947,3.43e-08,3;UBERON:0004054,3.43e-08,3;UBERON:0005383,5.80e-08,3;UBERON:0005382,5.80e-08,3;UBERON:0004175,2.43e-07,25;UBERON:0009663,3.64e-07,7;UBERON:0001894,4.60e-07,7;UBERON:0006222,4.60e-07,7;UBERON:0001000,8.67e-07,1;UBERON:0005352,8.67e-07,1;UBERON:0000998,9.67e-07,1;UBERON:0006868,9.67e-07,1 | |||
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|short_description=p1@PNMT | |short_description=p1@PNMT | ||
}} | }} |
Latest revision as of 22:27, 19 September 2015
Short description: | p1@PNMT |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PNMT_5end |
Coexpression cluster: | C360_Placental_Amniotic_amniotic_teratocarcinoma_chorionic_neuroblastoma_H9 |
Association with transcript: | 25bp_to_ENST00000394246_5end |
EntrezGene: | PNMT |
HGNC: | 9160 |
UniProt: | A8MT87 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 5.69e-27 | 19 |
placental epithelial cell | 1.79e-17 | 3 |
amniotic epithelial cell | 4.39e-12 | 2 |
central nervous system pericyte | 1.67e-11 | 2 |
chorionic membrane mesenchymal stem cell | 2.87e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 4.10e-30 | 14 |
membranous layer | 4.10e-30 | 14 |
extraembryonic structure | 5.97e-21 | 24 |
chorion | 1.03e-19 | 7 |
placenta | 3.15e-13 | 4 |
allantois | 3.15e-13 | 4 |
amnion | 1.66e-12 | 7 |
somatic layer of lateral plate mesoderm | 5.93e-11 | 8 |
neural nucleus | 3.42e-09 | 9 |
nucleus of brain | 3.42e-09 | 9 |
egg chorion | 2.87e-08 | 3 |
male genital duct | 3.43e-08 | 3 |
internal male genitalia | 3.43e-08 | 3 |
caudate-putamen | 5.80e-08 | 3 |
dorsal striatum | 5.80e-08 | 3 |
internal genitalia | 2.43e-07 | 25 |
telencephalic nucleus | 3.64e-07 | 7 |
diencephalon | 4.60e-07 | 7 |
future diencephalon | 4.60e-07 | 7 |
vas deferens | 8.67e-07 | 1 |
spermatic cord | 8.67e-07 | 1 |
seminal vesicle | 9.67e-07 | 1 |
seminal fluid secreting gland | 9.67e-07 | 1 |