FFCP PHASE2:Hg19::chrX:151903235..151903247,+: Difference between revisions
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(Created page with "{{FFCP |DHSsupport=supported |DPIdataset=robust |EntrezGene=entrezgene:158511 |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding |HGNC=HGNC:24294 |TSScl...") |
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|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene=158511 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC= | |HGNC=24294 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt= | |UniProt=Q6PB30 | ||
|association_with_transcript=7bp_to_ENST00000370287,NM_001102576,NM_153478,uc004fgd.2,uc004fge.2,uc004fgf.2_5end | |association_with_transcript=7bp_to_ENST00000370287,NM_001102576,NM_153478,uc004fgd.2,uc004fge.2,uc004fgf.2_5end | ||
|cluster_id=chrX:151903235..151903247,+ | |cluster_id=chrX:151903235..151903247,+ | ||
Latest revision as of 22:59, 19 September 2015
| Short description: | p3@CSAG1 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_3_at_CSAG1_5end |
| Coexpression cluster: | C2956_endometrial_nonsmall_cholangiocellular_liposarcoma_lymphangiectasia_medulloblastoma_melanoma |
| Association with transcript: | 7bp_to_ENST00000370287, NM_001102576, NM_153478, uc004fgd.2, uc004fge.2, uc004fgf.2_5end |
| EntrezGene: | CSAG1 |
| HGNC: | 24294 |
| UniProt: | Q6PB30 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p3@CSAG1 |
|---|
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- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| bone matrix secreting cell | 5.71e-07 | 2 |
| osteocyte | 5.71e-07 | 2 |
| osteoclast | 5.71e-07 | 2 |
Showing 1 to 3 of 3 entries
| Ontology term | p-value | n |
|---|---|---|
| larynx | 1.15e-27 | 9 |
| respiratory primordium | 2.01e-15 | 38 |
| endoderm of foregut | 2.01e-15 | 38 |
| upper respiratory tract | 3.68e-12 | 19 |
| segment of respiratory tract | 8.97e-12 | 47 |
| respiratory tract | 8.63e-10 | 54 |
| foregut | 1.48e-07 | 87 |
| respiratory system | 3.49e-07 | 74 |
Showing 1 to 8 of 8 entries
| Ontology term | p-value | n |
|---|---|---|
| cancer | 1.64e-31 | 235 |
| disease of cellular proliferation | 1.37e-30 | 239 |
| cell type cancer | 3.81e-26 | 143 |
| carcinoma | 2.65e-19 | 106 |
| organ system cancer | 6.06e-15 | 137 |
| sarcoma | 1.46e-09 | 20 |
| respiratory system cancer | 9.75e-09 | 16 |
| lung small cell carcinoma | 2.41e-07 | 4 |
| bronchus cancer | 3.07e-07 | 7 |
| bronchogenic carcinoma | 3.07e-07 | 7 |
Showing 1 to 10 of 13 entries
