FFCP PHASE1:Hg19::chr9:107690428..107690442,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=19 | |EntrezGene=19 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29 | |HGNC=29 | ||
|TSSclassifier=strong | |||
|UniProt=B1AMI1 | |UniProt=B1AMI1 | ||
|association_with_transcript=0bp_to_uc004bcl.2,uc004bcm.2_5end | |association_with_transcript=0bp_to_uc004bcl.2,uc004bcm.2_5end | ||
|cluster_id=chr9:107690428..107690442,- | |||
|coexpression_cluster_id=C1924 | |coexpression_cluster_id=C1924 | ||
|description=CAGE_peak_1_at_ABCA1_5end | |description=CAGE_peak_1_at_ABCA1_5end | ||
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|ontology_enrichment_celltype=CL:0000766!1.61e-25!76;CL:0002057!6.42e-25!42;CL:0000557!2.06e-22!71;CL:0002009!4.35e-21!65;CL:0000860!1.61e-20!45;CL:0002194!2.98e-20!63;CL:0000576!2.98e-20!63;CL:0000040!2.98e-20!63;CL:0000559!2.98e-20!63;CL:0000839!6.98e-20!70;CL:0000738!2.17e-09!140;CL:0000763!2.49e-09!112;CL:0000049!2.49e-09!112;CL:0000359!4.19e-07!32;CL:0002031!8.00e-07!124 | |ontology_enrichment_celltype=CL:0000766!1.61e-25!76;CL:0002057!6.42e-25!42;CL:0000557!2.06e-22!71;CL:0002009!4.35e-21!65;CL:0000860!1.61e-20!45;CL:0002194!2.98e-20!63;CL:0000576!2.98e-20!63;CL:0000040!2.98e-20!63;CL:0000559!2.98e-20!63;CL:0000839!6.98e-20!70;CL:0000738!2.17e-09!140;CL:0000763!2.49e-09!112;CL:0000049!2.49e-09!112;CL:0000359!4.19e-07!32;CL:0002031!8.00e-07!124 | ||
|ontology_enrichment_celltype_v019=CL:0000860;2.60e-19;33!CL:0002057;2.60e-19;33!CL:0000473;6.97e-19;39!CL:0000234;6.97e-19;39!CL:0000576;1.45e-15;48!CL:0000766;5.35e-14;69 | |ontology_enrichment_celltype_v019=CL:0000860;2.60e-19;33!CL:0002057;2.60e-19;33!CL:0000473;6.97e-19;39!CL:0000234;6.97e-19;39!CL:0000576;1.45e-15;48!CL:0000766;5.35e-14;69 | ||
|ontology_enrichment_celltype_v019_2=CL:0000766,1.00e-28,72;CL:0000473,3.64e-28,48;CL:0000234,3.64e-28,48;CL:0000557,1.76e-25,67;CL:0000860,6.14e-25,42;CL:0002057,6.14e-25,42;CL:0002009,3.20e-24,61;CL:0002194,2.29e-23,59;CL:0000576,2.29e-23,59;CL:0000040,2.29e-23,59;CL:0000559,2.29e-23,59;CL:0000839,8.60e-23,66;CL:0000763,1.05e-10,108;CL:0000049,1.05e-10,108;CL:0000738,1.66e-10,136;CL:0002031,8.14e-08,120;CL:0002087,3.65e-07,115;CL:0000359,4.15e-07,32 | |||
|ontology_enrichment_development_v019=CL:0002057;1.91e-18;42 | |ontology_enrichment_development_v019=CL:0002057;1.91e-18;42 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!2.52e-17!80;UBERON:0002405!1.02e-16!115;UBERON:0002204!1.45e-16!167;UBERON:0001474!4.15e-16!86;UBERON:0002390!5.77e-14!102;UBERON:0003061!5.77e-14!102;UBERON:0004765!4.54e-13!101;UBERON:0001434!4.54e-13!101;UBERON:0003081!4.93e-13!216;UBERON:0002193!2.36e-11!112;UBERON:0000922!1.59e-10!612;UBERON:0000467!3.38e-10!625;UBERON:0000923!3.53e-10!604;UBERON:0005291!3.53e-10!604;UBERON:0006598!3.53e-10!604;UBERON:0002532!3.53e-10!604;UBERON:0002050!3.61e-10!605;UBERON:0005423!3.61e-10!605;UBERON:0000480!5.35e-10!626;UBERON:0000468!2.88e-09!659;UBERON:0000062!6.21e-09!511;UBERON:0000479!1.00e-07!787;UBERON:0000926!6.84e-07!448;UBERON:0004120!6.84e-07!448;UBERON:0006603!6.84e-07!448 | |ontology_enrichment_uberon=UBERON:0002371!2.52e-17!80;UBERON:0002405!1.02e-16!115;UBERON:0002204!1.45e-16!167;UBERON:0001474!4.15e-16!86;UBERON:0002390!5.77e-14!102;UBERON:0003061!5.77e-14!102;UBERON:0004765!4.54e-13!101;UBERON:0001434!4.54e-13!101;UBERON:0003081!4.93e-13!216;UBERON:0002193!2.36e-11!112;UBERON:0000922!1.59e-10!612;UBERON:0000467!3.38e-10!625;UBERON:0000923!3.53e-10!604;UBERON:0005291!3.53e-10!604;UBERON:0006598!3.53e-10!604;UBERON:0002532!3.53e-10!604;UBERON:0002050!3.61e-10!605;UBERON:0005423!3.61e-10!605;UBERON:0000480!5.35e-10!626;UBERON:0000468!2.88e-09!659;UBERON:0000062!6.21e-09!511;UBERON:0000479!1.00e-07!787;UBERON:0000926!6.84e-07!448;UBERON:0004120!6.84e-07!448;UBERON:0006603!6.84e-07!448 | ||
|ontology_enrichment_uberon_v019= | |ontology_enrichment_uberon_v019= | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.37e-19,76;UBERON:0001474,3.75e-18,82;UBERON:0004765,2.47e-17,90;UBERON:0002204,4.94e-17,167;UBERON:0003081,9.35e-16,203;UBERON:0002390,1.00e-15,98;UBERON:0003061,1.00e-15,98;UBERON:0002405,4.16e-15,93;UBERON:0001434,5.95e-14,100;UBERON:0002193,9.67e-13,108;UBERON:0002050,2.71e-12,564;UBERON:0000926,2.94e-12,315;UBERON:0004120,2.94e-12,315;UBERON:0006603,2.94e-12,315;UBERON:0000923,1.06e-11,560;UBERON:0010316,1.06e-11,560;UBERON:0005291,1.06e-11,560;UBERON:0006598,1.06e-11,560;UBERON:0010317,1.06e-11,560;UBERON:0002532,1.06e-11,560;UBERON:0000922,2.46e-11,592;UBERON:0005423,2.90e-11,581;UBERON:0000479,3.98e-08,773 | |||
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| ||
|short_description=p1@ABCA1 | |short_description=p1@ABCA1 | ||
}} | }} |
Latest revision as of 23:20, 19 September 2015
Short description: | p1@ABCA1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ABCA1_5end |
Coexpression cluster: | C1924_CD14_mature_Hepatocyte_Mast_salivary_Smooth_Monocytederived |
Association with transcript: | 0bp_to_uc004bcl.2, uc004bcm.2_5end |
EntrezGene: | ABCA1 |
HGNC: | 29 |
UniProt: | B1AMI1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 1.00e-28 | 72 |
defensive cell | 3.64e-28 | 48 |
phagocyte | 3.64e-28 | 48 |
granulocyte monocyte progenitor cell | 1.76e-25 | 67 |
classical monocyte | 6.14e-25 | 42 |
CD14-positive, CD16-negative classical monocyte | 6.14e-25 | 42 |
macrophage dendritic cell progenitor | 3.20e-24 | 61 |
monopoietic cell | 2.29e-23 | 59 |
monocyte | 2.29e-23 | 59 |
monoblast | 2.29e-23 | 59 |
promonocyte | 2.29e-23 | 59 |
myeloid lineage restricted progenitor cell | 8.60e-23 | 66 |
myeloid cell | 1.05e-10 | 108 |
common myeloid progenitor | 1.05e-10 | 108 |
leukocyte | 1.66e-10 | 136 |
hematopoietic lineage restricted progenitor cell | 8.14e-08 | 120 |
nongranular leukocyte | 3.65e-07 | 115 |
vascular associated smooth muscle cell | 4.15e-07 | 32 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.37e-19 | 76 |
bone element | 3.75e-18 | 82 |
skeletal element | 2.47e-17 | 90 |
musculoskeletal system | 4.94e-17 | 167 |
lateral plate mesoderm | 9.35e-16 | 203 |
hematopoietic system | 1.00e-15 | 98 |
blood island | 1.00e-15 | 98 |
immune system | 4.16e-15 | 93 |
skeletal system | 5.95e-14 | 100 |
hemolymphoid system | 9.67e-13 | 108 |
embryonic structure | 2.71e-12 | 564 |
mesoderm | 2.94e-12 | 315 |
mesoderm-derived structure | 2.94e-12 | 315 |
presumptive mesoderm | 2.94e-12 | 315 |
germ layer | 1.06e-11 | 560 |
germ layer / neural crest | 1.06e-11 | 560 |
embryonic tissue | 1.06e-11 | 560 |
presumptive structure | 1.06e-11 | 560 |
germ layer / neural crest derived structure | 1.06e-11 | 560 |
epiblast (generic) | 1.06e-11 | 560 |
embryo | 2.46e-11 | 592 |
developing anatomical structure | 2.90e-11 | 581 |
tissue | 3.98e-08 | 773 |