FFCP PHASE1:Hg19::chr12:66358080..66358094,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=8091 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=5009 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=384bp_to_AK311447_5end | |||
|cluster_id=chr12:66358080..66358094,+ | |||
|coexpression_cluster_id=C1682 | |||
|description=CAGE_peak_15_at_HMGA2_5end | |||
|id=chr12:66358080..66358094,+ | |||
|ontology_enrichment_celltype=CL:0000055!9.29e-20!180;CL:0002321!5.78e-16!248;CL:0000220!2.80e-15!246;CL:0000548!8.72e-15!679;CL:0000004!8.72e-15!679;CL:0000255!8.72e-15!679;CL:0000012!2.97e-14!682;CL:0002371!2.57e-12!591;CL:0000680!8.01e-12!57;CL:0000056!8.01e-12!57;CL:0000355!8.01e-12!57;CL:0000393!1.53e-11!60;CL:0000211!1.53e-11!60;CL:0000144!1.73e-11!625;CL:0000187!1.73e-10!54;CL:0000183!2.31e-10!59;CL:0000066!1.37e-08!254;CL:0000003!6.49e-08!722;CL:0000192!1.15e-07!42;CL:0000514!1.15e-07!42 | |||
|ontology_enrichment_celltype_v019=CL:0002540;3.71e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000680,2.24e-09,58;CL:0000056,2.24e-09,58;CL:0000355,2.24e-09,58;CL:0000393,5.15e-09,61;CL:0000211,5.15e-09,61;CL:0000187,1.15e-07,55;CL:0002540,2.65e-07,6;CL:0002321,7.36e-07,250 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000486!6.23e-15!82;UBERON:0000914!1.32e-13!83;UBERON:0002329!1.32e-13!83;UBERON:0003077!1.32e-13!83;UBERON:0003059!1.32e-13!83;UBERON:0007282!1.32e-13!83;UBERON:0009618!1.32e-13!83;UBERON:0007285!1.32e-13!83;UBERON:0005256!5.42e-13!143;UBERON:0004290!3.97e-12!70;UBERON:0000490!2.77e-10!138;UBERON:0001134!5.64e-10!61;UBERON:0002036!5.64e-10!61;UBERON:0003082!5.64e-10!61;UBERON:0002385!3.65e-09!63;UBERON:0001015!3.65e-09!63;UBERON:0000383!3.65e-09!63;UBERON:0003102!1.14e-08!95;UBERON:0000119!1.14e-08!312;UBERON:0000483!2.72e-08!309;UBERON:0000481!1.33e-07!347;UBERON:0003104!3.06e-07!238;UBERON:0009142!3.06e-07!238;UBERON:0002100!3.34e-07!216;UBERON:0000475!9.12e-07!365 | |||
|ontology_enrichment_uberon_v019=UBERON:0002385;4.10e-07;31!UBERON:0001015;4.10e-07;31!UBERON:0000383;4.10e-07;31 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000486,1.76e-12,83;UBERON:0007524,6.97e-11,73;UBERON:0002329,1.66e-10,71;UBERON:0003059,1.66e-10,71;UBERON:0007282,1.66e-10,71;UBERON:0004290,1.66e-10,71;UBERON:0009618,1.66e-10,71;UBERON:0003077,3.10e-10,72;UBERON:0007285,3.10e-10,72;UBERON:0007503,1.24e-09,78;UBERON:0005256,5.67e-09,122;UBERON:0003104,9.20e-09,160;UBERON:0009142,9.20e-09,160;UBERON:0000490,1.00e-08,148;UBERON:0001134,2.70e-08,62;UBERON:0002036,2.70e-08,62;UBERON:0003082,2.70e-08,62;UBERON:0002385,8.20e-08,64;UBERON:0001015,8.20e-08,64;UBERON:0000383,8.20e-08,64 | |||
|phase1_expression=0,0.428201047781966,0,0,0,0,0,0.631719873426831,0,0.245733936501509,0.697801167972428,1.52908960491121,0.263766978228454,0.37129905888014,1.98838425436749,8.0679017574213,4.82155622419182,4.38186054232424,12.1983199697627,0,0,0.313454721478088,0.85870796139317,1.64249310087461,0.627713197974014,0.382067028739756,0.57470412614962,0.314843125254717,0,0,0,0,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188242339542605,0,0,0,0,0,0,0,0,0.290209238628584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0.12786256184353,0.361439152384566,0,0.144846518960824,0.795285947051099,2.43317435151318,1.89069634328136,3.32594096193846,5.09441757020131,0.0654895377488563,0.364295288292542,0,0,0,0,0,0,0,0,0,0,0,0.419499436209906,1.6507082516404,0,0.516833518338658,0.35576626268671,0,0.402829317109147,0,0,0.367663080345869,0,1.96459402224975,0.898117490504679,1.0135033243499,0,0,0.916008719652036,0,0,0,0.993943903390637,0.379891534993739,1.19168262731897,1.43418310374407,0.354668382198357,1.68203280042692,0,0.74000264525148,0,2.02066008104532,1.79808093424805,0,0.576175924479999,0,6.55536161343673,1.1409436430889,13.7492786107657,0.939475989150119,3.0755859429945,4.21352420106745,0.408308342509787,8.84407084644729,0.206651562351531,0,0.989067717114227,0,0,3.87173062094352,4.12891115577482,0,0.877955241761676,0,0.45071417671979,2.7223723958405,0.89694817844431,0,0.211931901159562,0.300091096084402,0.412210116953756,0,0,0.675105328965065,0.0974370051611986,1.26216887122057,0.0920498986422993,0.323292113637624,1.06502877754984,0.302256294682921,0.67824236924195,2.51239109112286,1.63647672354501,0.860413786167011,2.92736894711029,1.06023814657188,2.67246068599892,1.86589899027667,4.54177531576131,2.91981887260664,0,0.643240938192885,0,1.85747171212792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.441463099414651,1.47586126251736,1.20097467208968,0.768251997860379,0,0.804231779293047,4.62942225792648,0,0,1.44331342025273,2.31860809950154,0.117408694235822,0.288732895522148,0.925971025153221,0.190254152234598,0,0,0,0,0,0,0.503946384596579,0.283550194484773,0.806026704325635,2.03443756959773,0.766765358330422,0,0,0,0,0,0.063497894292169,0,0,0,0.205654985406647,0,0,0.112131084345361,0.43596006883328,1.1734125731352,1.68053230485111,0,1.690605505112,0.531876233169741,0,2.05765899409714,1.41849132023278,3.46348832720929,0.142977993658148,0,0,1.30294473717494,0,0.791951872933429,0,0,0.399891964728228,0,0,0,0.239624855491583,0,1.42636905040718,2.02693829334611,3.6985738059069,1.07436577943937,0,0,0,0,0.508189248444927,0,0.773288812777695,0,0,0,0,0,0.736148950314839,0.500170521059677,2.98391526069709,0,0.178428988797162,0.157702415033935,0.234282829985426,0.300946099727719,0,0,2.65690239414175,0.553107505625109,3.38846096425523,0.195801157462741,0.343143423810856,0,0,0,0.303127571446259,1.66435439510497,0.604780586659361,0,0,0,0,0.511707249066704,0.321707842287215,0,5.24312958929029,1.77561725313127,1.23190734020714,4.67328986265259,2.44041794765914,1.20859449591622,4.0101294060657,0.552485933615378,0.229628896329213,2.73136752010076,0.524497659837696,2.25599806453706,4.46688955205606,0,1.46139224653261,3.0609972378934,0,0.510281115829547,4.10240240594065,0,0.270946437543853,0,0,0,0.895499018888713,0,0,2.3080511260475,0.984043937099117,0.325378394664303,0,0,0,0,0.650060246036521,0,1.06337790121334,0.616194468458578,2.14905144616581,3.99726060205139,0.644521469209642,1.16013355131383,4.94314439013385,0.267096106940212,1.65284915360978,1.92190067365106,1.53135254993501,0.50578890427775,3.71876439437829,0.31481234683064,0.6970372701606,0,0.532306030317022,0,0.74129687641568,0.143124886741991,1.116475108079,0,0.762520775695299,0.255897791311334,0.42793898803392,0,0,0.539617372749944,1.37268514868027,1.41374882814824,0,1.58510321173008,0.421258456238981,0,1.70599442741899,0,0.272999822815972,0.565621727814851,1.13008116620243,0,2.65375590096488,2.19225442626881,1.73632660280006,3.27947376023316,0.608731130888112,1.54911749049875,1.12678241012897,4.30234056612155,1.47373561519682,0.35667105148125,0.354761064070598,0,0.658589785919804,0.75894634753143,0.349934720244983,0.48111056362756,0,0,0,1.29151611801369,1.68471475667626,0,2.29723400206959,0,0,0,0,0,0,0,0,13.2461848198067,0,0.735120647943095,0,0,0,0,0.199579371432817,0,1.05836791361941,0,0,0,0,0,0.169291777801603,0,0,0,0,0,0,0,0,0.278406173895242,0,0,1.99843180798692,0,0,0,4.12625773948346,0,1.13654458722565,0,0,0,0,0,0.445234820091624,0,0,0.19924798825107,0,0,0.20453736500431,0,0.311039587661807,1.25815691606258,0,0,0,0,0,0,0,0,0,0,0,3.98277068999249,0.254253650292766,0,0,0.291604613383254,0,0,0,0,0,0,0,0,0.139423744278603,0,0.113942055847001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.70591096828924,1.14262965711403,0.565412285735763,0.216388639742091,0,0,0,0,0,0,0,0,0,0,0.19566461893209,0,0,0,0,0,0.150323419414493,0.207376382794494,0,3.30991955875499,0.627865836814451,2.38944859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| |||
|short_description=p15@HMGA2 | |||
}} |
Latest revision as of 23:44, 19 September 2015
Short description: | p15@HMGA2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_15_at_HMGA2_5end |
Coexpression cluster: | C1682_schwannoma_Fibroblast_hepatoblastoma_Wilms_adrenal_Aortic_meningioma |
Association with transcript: | 384bp_to_AK311447_5end |
EntrezGene: | HMGA2 |
HGNC: | 5009 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
muscle precursor cell | 2.24e-09 | 58 |
myoblast | 2.24e-09 | 58 |
multi-potent skeletal muscle stem cell | 2.24e-09 | 58 |
electrically responsive cell | 5.15e-09 | 61 |
electrically active cell | 5.15e-09 | 61 |
muscle cell | 1.15e-07 | 55 |
mesenchymal stem cell of the bone marrow | 2.65e-07 | 6 |
embryonic cell | 7.36e-07 | 250 |
Ontology term | p-value | n |
---|---|---|
multilaminar epithelium | 1.76e-12 | 83 |
dense mesenchyme tissue | 6.97e-11 | 73 |
somite | 1.66e-10 | 71 |
presomitic mesoderm | 1.66e-10 | 71 |
presumptive segmental plate | 1.66e-10 | 71 |
dermomyotome | 1.66e-10 | 71 |
trunk paraxial mesoderm | 1.66e-10 | 71 |
paraxial mesoderm | 3.10e-10 | 72 |
presumptive paraxial mesoderm | 3.10e-10 | 72 |
epithelial vesicle | 1.24e-09 | 78 |
trunk mesenchyme | 5.67e-09 | 122 |
mesenchyme | 9.20e-09 | 160 |
entire embryonic mesenchyme | 9.20e-09 | 160 |
unilaminar epithelium | 1.00e-08 | 148 |
skeletal muscle tissue | 2.70e-08 | 62 |
striated muscle tissue | 2.70e-08 | 62 |
myotome | 2.70e-08 | 62 |
muscle tissue | 8.20e-08 | 64 |
musculature | 8.20e-08 | 64 |
musculature of body | 8.20e-08 | 64 |