FFCP PHASE1:Hg19::chr5:122111045..122111064,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6643 | |EntrezGene=6643 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11173 | |HGNC=11173 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=35bp_to_uc011cwn.1_5end | |association_with_transcript=35bp_to_uc011cwn.1_5end | ||
|cluster_id=chr5:122111045..122111064,+ | |||
|coexpression_cluster_id=C47 | |||
|description=CAGE_peak_4_at_SNX2_5end | |description=CAGE_peak_4_at_SNX2_5end | ||
|id=chr5:122111045..122111064,+ | |id=chr5:122111045..122111064,+ | ||
|ontology_enrichment_celltype=CL:0000738!1.90e-24!140;CL:0002031!2.01e-20!124;CL:0002087!5.99e-19!119;CL:0000037!6.18e-19!172;CL:0000566!6.18e-19!172;CL:0000988!1.58e-16!182;CL:0002032!9.67e-16!165;CL:0000837!9.67e-16!165;CL:0000542!3.14e-15!53;CL:0000051!3.14e-15!53;CL:0000838!4.82e-15!52;CL:0000945!8.74e-13!24;CL:0000826!8.74e-13!24;CL:0000236!1.37e-10!14;CL:0000766!1.90e-07!76;CL:0000557!7.01e-07!71 | |ontology_enrichment_celltype=CL:0000738!1.90e-24!140;CL:0002031!2.01e-20!124;CL:0002087!5.99e-19!119;CL:0000037!6.18e-19!172;CL:0000566!6.18e-19!172;CL:0000988!1.58e-16!182;CL:0002032!9.67e-16!165;CL:0000837!9.67e-16!165;CL:0000542!3.14e-15!53;CL:0000051!3.14e-15!53;CL:0000838!4.82e-15!52;CL:0000945!8.74e-13!24;CL:0000826!8.74e-13!24;CL:0000236!1.37e-10!14;CL:0000766!1.90e-07!76;CL:0000557!7.01e-07!71 | ||
|ontology_enrichment_celltype_v019=CL:0000236;5.04e-30;13!CL:0000945;9.48e-18;24!CL:0000542;5.73e-12;53!CL:0000226;6.73e-10;3!CL:0000842;6.73e-10;3!CL:0000764;7.50e-07;2!CL:0000558;7.50e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000236,1.14e-27,14;CL:0000945,7.54e-18,24;CL:0000826,7.54e-18,24;CL:0000838,7.44e-16,52;CL:0000542,1.82e-15,53;CL:0000051,1.82e-15,53;CL:0002087,2.94e-15,115;CL:0000738,3.65e-15,136;CL:0000037,1.15e-14,168;CL:0000988,1.82e-13,177;CL:0002031,3.97e-13,120;CL:0002032,1.31e-10,161;CL:0000837,1.31e-10,161;CL:0000226,1.59e-09,3;CL:0000842,1.59e-09,3;CL:0000764,8.03e-07,2;CL:0000765,8.03e-07,2;CL:0000050,8.03e-07,2;CL:0000038,8.03e-07,2;CL:0000558,8.03e-07,2;CL:0000547,8.03e-07,2;CL:0000549,8.03e-07,2;CL:0000550,8.03e-07,2;CL:0000552,8.03e-07,2 | |||
|ontology_enrichment_development_v019=CL:0000051;5.73e-12;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!5.04e-13!102;UBERON:0003061!5.04e-13!102;UBERON:0002193!4.93e-12!112;UBERON:0007023!2.25e-09!115;UBERON:0002371!2.92e-07!80 | |ontology_enrichment_uberon=UBERON:0002390!5.04e-13!102;UBERON:0003061!5.04e-13!102;UBERON:0002193!4.93e-12!112;UBERON:0007023!2.25e-09!115;UBERON:0002371!2.92e-07!80 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;3.33e-09;15!UBERON:0000179;3.33e-09;15!UBERON:0000463;3.33e-09;15!UBERON:0002390;3.56e-07;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,2.99e-09,15;UBERON:0000179,2.99e-09,15;UBERON:0000463,2.99e-09,15 | |||
|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0.123766352960047,0,0.672325146451775,0,0,0,0,0.408001382488506,0,0,0,0.125542639594803,0.229240217243854,0.164201178899891,0.393553906568396,0.393364276848904,0.767658796194425,1.08371286321253,0,0,0,1.78174561334694,0.426507697462265,1.17440175733939,0,0,0.217010870715852,0.671746422719773,0,0.257575567634187,0,0,0.242584061187816,0.232429036905685,0,0,1.1507695692886,0.256160706529101,0,0.344745680736619,0,0,0.376484679085209,0,0.224723484445085,0.612167784741805,0,1.27867425159808,0,0.199463657621632,0.426224750532694,0.290209238628584,0,0,0,0,0.434377689410233,0,1.47311054395026,0,1.05627643155971,0.425208599930087,0.419317291016752,0.44931452458598,0.150176892841506,0.16072558669708,0.285012743741249,0.39783335439818,0.730656615058536,15.839662001519,13.6534652815533,15.1216573156804,20.0563204606258,16.4162354684765,13.7940585589076,13.8819423284821,17.1729675816366,27.3222225172535,20.5533016279829,22.9363936875137,0,1.12101712596307,0,2.16380747125216,0.393010762749165,1.43921049299656,0.501559486172034,0.32592226663359,0,0,1.22551502573691,1.17842362989935,0.664601683750863,1.89562704635511,1.15282187753108,1.1705341280389,0.328875809207352,0.276350017785848,0,0.741432815810302,1.07016331235885,1.04535523804977,1.0197840842781,0.383220493601921,1.71813722741315,1.01207876807801,0.318565414324097,0.651083453856419,0,0.451725357233318,0,0,0.236777252044017,0,2.21767417547206,1.60464117470104,0.868946423296794,0,0.670700859703636,0,0,0,0.144846518960824,0.795285947051099,0,0,0.221729397462564,0,0.196468613246569,0,0,1.9472843619281,1.91542711029194,1.32957960518865,0.715471872916026,1.71598473234038,0.371457501329565,0,0,0,0,0,0,0,0,0.35576626268671,0,0,0,0,0,0.81014194788176,0,0,0,0,0,0,2.63560834872127,0,0,0,0.12663051166458,0.132409180813219,0,0.354668382198357,0,0,0.49333509683432,0,0,0.163461903113459,0,0,0,0,0,0,0,0.323745888736263,0,0,0,0.103325781175765,0,0,0,0,0,0,0,0,0.30648779579902,0,0.113432183160021,0,0,0,0,0.103052529238439,0,0,0,0,0,0,0,0,0,0,0,0,0.286804595389004,0,0,0,0.10366105501537,0,0,0,0,0,0.464367928031979,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0.441463099414651,0,0.514703430895577,0.768251997860379,0,0,0.0925884451585296,0,0,1.44331342025273,0.115930404975077,0.939269553886573,0,0,0,0,0,1.47730203652438,0.468008530278475,0.148631162288728,0.93733833986777,0,0.141775097242386,0.358234090811393,0.290633938513962,0,0.492663237895943,0.088048434013226,0.207328115540772,0.144119953416961,0.37872730027914,0,0,0,0,0,0,0,0,0.43596006883328,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301439377059586,0,0,0,0,0,0,0,0,0,0,0,0.112085143993527,1.37921532141349,0.646882724578552,0.641715181398742,0,0,0,0,0,0.749007023947182,0,0.828831026872071,0.12269149171914,0,0,0.207970861530807,0,0,0,0,0,0,0,0,0,0,0,3.51505644408909,1.07857100409308,1.06727557803444,0,0,0,0.496215615637554,0.153461973288062,0,0.128139149255701,0,0.160853921143607,0,0,0,0,0,0,0.120859449591622,0.601519410909855,0.276242966807689,0.114814448164607,0,0.131124414959424,0,0.0770153371044148,0,0,0.211103257785751,0,0,0,0,0,0,0.254876273045038,0,0,1.75407901316748,1.0457418040996,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0.137836572484531,0,0,0.0852266274161009,0,0.330569830721956,0,0.127612712494584,0.10115778085555,0,0,0,0,0,0,0.18532421910392,0.143124886741991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143411352204052,0,0,0,0,0,0,0,0,0,0,0,0,1.68471475667626,0,0.689170200620878,0,0.764637207142375,0.569647187174163,1.66762242820452,2.87953591160336,1.94541993357815,0.540031437238115,0,0,0,0,0.185803175125719,0,0.142283686696828,0.159426272728822,0,0.383010740264733,0,0,0,0.228234679033192,0,0,0,0,0,0,0,0,0,0.834245708559542,0,0,0,0,0,0,0,0,0,0,0,2.3874448473769,2.37571744666111,1.53580351049616,0,0.140669416410513,0,0,0,0,1.10513566212459,0,0,0.615424027305347,0,0.179736702294654,0,0.511572370226872,0.0986434056369336,2.3948309234694,0,0,0.0927680981618513,0,0.260427761085233,0.349839999984783,0,0,0,1.65471377237555,0,0.291604613383254,0,0.885741385813839,0,0,0.221158519862449,0.591095237907095,0.219385397153973,0.435753854075961,0.83654246567162,0.153900517007594,0,0.23056390438806,2.51321404347362,2.82483166997221,0.957003479195758,0.183195186803725,0,0,0,0,0,0,0,0,0,0,0.163232808159148,0.424059214301822,0,0.995261931078505,0.0884575645033392,0,0.296521128680622,0,0,0.067401132980677,0,0.234264445725339,0.364909578431332,0,0,0.394584402849391,0,0,0.63186579628488,0,0,0,0,0,0,0,0,0.173559738335131,0.0979923974143777,0,0.34945333648406,0,0.0967563312890851,0.803982487948041,0.328461828212837,0,0.0882561266915003,0,0.137041924646751,0,0.316553979779393,0.391102765469606,0.0801588202515337,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,1.27746588066972,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254019996197353,0.795229689809303,0.136203406111576,0,0.412618309791701,0.415440338029185,0.674921674654501,0.77380195455795,0.242998226632099,0.670869375198532,0.236417121897595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| ||
|short_description=p4@SNX2 | |short_description=p4@SNX2 | ||
}} | }} |
Latest revision as of 23:53, 19 September 2015
Short description: | p4@SNX2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_SNX2_5end |
Coexpression cluster: | C47_CD19_Burkitt_acute_xeroderma_tonsil_lymphoma_appendix |
Association with transcript: | 35bp_to_uc011cwn.1_5end |
EntrezGene: | SNX2 |
HGNC: | 11173 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
B cell | 1.14e-27 | 14 |
lymphocyte of B lineage | 7.54e-18 | 24 |
pro-B cell | 7.54e-18 | 24 |
lymphoid lineage restricted progenitor cell | 7.44e-16 | 52 |
lymphocyte | 1.82e-15 | 53 |
common lymphoid progenitor | 1.82e-15 | 53 |
nongranular leukocyte | 2.94e-15 | 115 |
leukocyte | 3.65e-15 | 136 |
hematopoietic stem cell | 1.15e-14 | 168 |
hematopoietic cell | 1.82e-13 | 177 |
hematopoietic lineage restricted progenitor cell | 3.97e-13 | 120 |
hematopoietic oligopotent progenitor cell | 1.31e-10 | 161 |
hematopoietic multipotent progenitor cell | 1.31e-10 | 161 |
single nucleate cell | 1.59e-09 | 3 |
mononuclear cell | 1.59e-09 | 3 |
erythroid lineage cell | 8.03e-07 | 2 |
erythroblast | 8.03e-07 | 2 |
megakaryocyte-erythroid progenitor cell | 8.03e-07 | 2 |
erythroid progenitor cell | 8.03e-07 | 2 |
reticulocyte | 8.03e-07 | 2 |
proerythroblast | 8.03e-07 | 2 |
basophilic erythroblast | 8.03e-07 | 2 |
polychromatophilic erythroblast | 8.03e-07 | 2 |
orthochromatic erythroblast | 8.03e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
blood | 2.99e-09 | 15 |
haemolymphatic fluid | 2.99e-09 | 15 |
organism substance | 2.99e-09 | 15 |